iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Cel-018677

Ensembl Protein ID

ZK1010.1

UniProt Accession

P49632; P14792; Q9U1P3; RL40_CAEEL

Genbank Protein ID

AAC37252.1; CAB04967.1

Protein Name

Ubiquitin-60S ribosomal protein L40; CEP52; Ubiquitin; 60S ribosomal protein L40

Genbank Nucleotide ID

L31492; Z82083

Gene Name

ubq-2; ubib; ZK1010.1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
WBGene00006728	ZK1010.1	ZK1010.1

Annotation

mRNA Expression
GEO
DNA & RNA Element
microRNA	miRNAMap	RAID2
Protein-protein Interaction
IID	iRefIndex	PINA	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/NEDD8	3.80e-41	139.5	1	76
ULD/UDP/UBQ/UBQ_PIM	5.10e-29	100.3	1	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e sdtie++k+++++keGiPP+qqrli+aGkqled++t++dyn++k+s+LhLvL+LrGG
   Q: 1    MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
           89*************************************************************************9 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+ +dt+e++K+ki+++ g+pp+qq+LI+aGk+L+D +tLs+++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
           99********************************************************************986 PP

Organism

Caenorhabditis elegans

Functional Description
(View)

60S ribosomal protein L40: component of the 60S subunit of the ribosome.

Protein Sequence
(Fasta)

MQIFVKTLTG KTITLEVEAS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN 60
IQKESTLHLV LRLRGGIIEP SLRQLAQKYN CDKQICRKCY ARLPPRASNC RKKKCGHSSE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCATGCAAAT CTTCGTCAAG ACTCTGACGG GTAAGACTAT TACCCTCGAA GTCGAGGCTT 60
CCGATACCAT TGAGAATGTC AAGGCCAAGA TCCAAGACAA GGAGGGAATC CCACCAGATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
KW-0832--Ubl conjugation

Interpro

IPR001975--Ribosomal_L40e
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF01020--Ribosomal_L40e
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM01377--Ribosomal_L40e
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0005840--C:ribosome
GO:0003735--F:structural constituent of ribosome
GO:0006412--P:translation

KEGG

cel:CELE_ZK1010.1

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001006	Aegilops tauschii	58.94	1.00e-43	167.00
IUUC-Aml-001246	Ailuropoda melanoleuca	92.97	2.00e-66	242.00
IUUC-Atr-003081	Amborella trichopoda	69.77	2.00e-41	159.00
IUUC-Ath-007098	Arabidopsis thaliana	89.06	1.00e-63	233.00
IUUC-Ago-007932	Ashbya gossypii	89.06	9.00e-66	240.00
IUUC-Acl-008350	Aspergillus clavatus	83.46	3.00e-62	228.00
IUUC-Afl-008554	Aspergillus flavus	89.84	3.00e-66	242.00
IUUC-Afu-008984	Aspergillus fumigatus	89.84	3.00e-65	238.00
IUUC-Ang-009609	Aspergillus niger	89.06	3.00e-65	238.00
IUUC-Aor-009991	Aspergillus oryzae	88.19	4.00e-64	234.00
IUUC-Ate-010252	Aspergillus terreus	89.60	1.00e-64	239.00
IUUC-Ame-010785	Astyanax mexicanus	90.53	2.00e-47	179.00
IUUC-Bgr-012115	Blumeria graminis	88.00	4.00e-63	231.00
IUUC-Bta-013360	Bos taurus	92.97	2.00e-66	242.00
IUUC-Bci-013851	Botrytis cinerea	89.06	2.00e-65	239.00
IUUC-Bdi-014499	Brachypodium distachyon	88.28	5.00e-63	231.00
IUUC-Bol-015961	Brassica oleracea	89.06	2.00e-63	232.00
IUUC-Cja-019572	Callithrix jacchus	92.97	2.00e-66	242.00
IUUC-Cfa-020339	Canis familiaris	92.97	2.00e-66	242.00
IUUC-Cpo-021534	Cavia porcellus	92.97	2.00e-66	242.00
IUUC-Cre-022567	Chlamydomonas reinhardtii	88.28	4.00e-63	231.00
IUUC-Csa-023398	Chlorocebus sabaeus	92.97	2.00e-66	242.00
IUUC-Cin-025266	Ciona intestinalis	89.84	3.00e-64	235.00
IUUC-Csv-026105	Ciona savignyi	89.76	3.00e-64	235.00
IUUC-Cgl-026502	Colletotrichum gloeosporioides	88.80	2.00e-63	236.00
IUUC-Cne-026913	Cryptococcus neoformans	89.84	5.00e-66	241.00
IUUC-Cme-027344	Cyanidioschyzon merolae	92.31	2.00e-45	172.00
IUUC-Dre-028761	Danio rerio	92.97	3.00e-66	241.00
IUUC-Dno-028899	Dasypus novemcinctus	92.19	3.00e-65	238.00
IUUC-Dor-030658	Dipodomys ordii	98.68	9.00e-40	153.00
IUUC-Dme-031588	Drosophila melanogaster	92.97	4.00e-66	241.00
IUUC-Ete-033120	Echinops telfairi	92.97	2.00e-66	242.00
IUUC-Eca-033787	Equus caballus	92.97	2.00e-66	242.00
IUUC-Eeu-035081	Erinaceus europaeus	97.14	2.00e-34	135.00
IUUC-Fca-035725	Felis catus	92.97	2.00e-66	242.00
IUUC-Fox-037870	Fusarium oxysporum	89.06	1.00e-65	239.00
IUUC-Fso-038461	Fusarium solani	95.00	2.00e-41	158.00
IUUC-Gmo-039163	Gadus morhua	92.97	3.00e-66	241.00
IUUC-Ggr-040034	Gaeumannomyces graminis	89.06	8.00e-66	241.00
IUUC-Gga-040909	Gallus gallus	91.41	1.00e-65	239.00
IUUC-Gac-041640	Gasterosteus aculeatus	93.75	8.00e-67	243.00
IUUC-Gma-043254	Glycine max	89.06	6.00e-64	234.00
IUUC-Ggo-045411	Gorilla gorilla	92.97	2.00e-66	242.00
IUUC-Hsa-046609	Homo sapiens	73.72	7.00e-51	191.00
IUUC-Hvu-047579	Hordeum vulgare	69.12	3.00e-50	189.00
IUUC-Itr-048586	Ictidomys tridecemlineatus	92.97	6.00e-67	245.00
IUUC-Kpa-049279	Komagataella pastoris	89.84	5.00e-66	241.00
IUUC-Lch-049971	Latimeria chalumnae	92.19	1.00e-65	241.00
IUUC-Lpe-051472	Leersia perrieri	79.70	8.00e-52	196.00
IUUC-Loc-052117	Lepisosteus oculatus	93.75	6.00e-67	244.00
IUUC-Lma-053049	Leptosphaeria maculans	90.62	6.00e-66	240.00
IUUC-Laf-054284	Loxodonta africana	92.97	5.00e-67	246.00
IUUC-Mcc-055710	Macaca mulatta	91.54	2.00e-65	240.00
IUUC-Meu-056411	Macropus eugenii	92.97	2.00e-66	242.00
IUUC-Mor-057008	Magnaporthe oryzae	90.62	2.00e-66	242.00
IUUC-Mpo-057360	Magnaporthe poae	87.50	7.00e-65	237.00
IUUC-Mtr-058437	Medicago truncatula	89.06	2.00e-63	232.00
IUUC-Mla-059080	Melampsora laricipopulina	88.00	6.00e-49	184.00
IUUC-Mvi-060484	Microbotryum violaceum	94.67	1.00e-37	147.00
IUUC-Mmr-061335	Microcebus murinus	86.72	1.00e-59	220.00
IUUC-Mdo-062752	Monodelphis domestica	92.97	2.00e-66	242.00
IUUC-Mmu-063548	Mus musculus	92.97	5.00e-67	245.00
IUUC-Mac-064915	Musa acuminata	88.28	7.00e-63	230.00
IUUC-Mpu-066513	Mustela putorius furo	92.97	2.00e-66	242.00
IUUC-Mlu-068010	Myotis lucifugus	90.62	7.00e-65	237.00
IUUC-Nfi-068358	Neosartorya fischeri	89.68	1.00e-64	236.00
IUUC-Ncr-068799	Neurospora crassa	89.06	3.00e-65	238.00
IUUC-Opr-070655	Ochotona princeps	92.97	2.00e-66	242.00
IUUC-Ont-072180	Oreochromis niloticus	93.65	1.00e-65	239.00
IUUC-Oan-073196	Ornithorhynchus anatinus	92.97	2.00e-66	242.00
IUUC-Oba-075092	Oryza barthii	89.06	1.00e-63	233.00
IUUC-Obr-076156	Oryza brachyantha	89.06	9.00e-64	234.00
IUUC-Ogl-077471	Oryza glaberrima	89.06	1.00e-63	233.00
IUUC-Ogu-078259	Oryza glumaepatula	89.06	1.00e-63	233.00
IUUC-Oin-079901	Oryza indica	89.06	1.00e-63	233.00
IUUC-Olo-080789	Oryza longistaminata	43.53	8.00e-17	79.30
IUUC-Ome-081343	Oryza meridionalis	89.06	1.00e-63	233.00
IUUC-Oni-082301	Oryza nivara	81.19	5.00e-34	135.00
IUUC-Opu-083839	Oryza punctata	66.42	2.00e-37	149.00
IUUC-Oru-085252	Oryza rufipogon	89.06	1.00e-63	233.00
IUUC-Osa-085747	Oryza sativa	80.60	1.00e-52	196.00
IUUC-Ola-086333	Oryzias latipes	93.75	7.00e-67	244.00
IUUC-Olu-087819	Ostreococcus lucimarinus	82.81	1.00e-61	226.00
IUUC-Oga-088027	Otolemur garnettii	92.97	2.00e-66	242.00
IUUC-Oar-090419	Ovis aries	92.97	2.00e-66	242.00
IUUC-Ptr-091593	Pan troglodytes	92.97	2.00e-66	242.00
IUUC-Pan-091806	Papio anubis	89.06	3.00e-62	228.00
IUUC-Psi-093654	Pelodiscus sinensis	92.97	2.00e-66	242.00
IUUC-Ppa-095174	Physcomitrella patens	87.50	2.00e-62	229.00
IUUC-Pfo-096492	Poecilia formosa	93.75	1.00e-66	243.00
IUUC-Pab-098004	Pongo abelii	92.97	2.00e-66	242.00
IUUC-Pop-098929	Populus trichocarpa	88.28	7.00e-63	230.00
IUUC-Ppe-101497	Prunus persica	89.06	2.00e-63	232.00
IUUC-Pva-102945	Pteropus vampyrus	92.97	2.00e-66	242.00
IUUC-Pgr-103268	Puccinia graminis	88.28	2.00e-65	240.00
IUUC-Ptt-103804	Puccinia triticina	89.11	2.00e-51	192.00
IUUC-Pte-104101	Pyrenophora teres	89.84	1.00e-65	240.00
IUUC-Pyt-104639	Pyrenophora triticirepentis	89.84	5.00e-65	237.00
IUUC-Rno-105290	Rattus norvegicus	92.97	2.00e-66	242.00
IUUC-Sce-106249	Saccharomyces cerevisiae	89.06	6.00e-66	240.00
IUUC-Sha-106570	Sarcophilus harrisii	92.97	2.00e-66	242.00
IUUC-Sja-107834	Schizosaccharomyces japonicus	89.84	8.00e-66	240.00
IUUC-Spo-108045	Schizosaccharomyces pombe	90.62	2.00e-66	242.00
IUUC-Ssl-108670	Sclerotinia sclerotiorum	89.84	8.00e-66	240.00
IUUC-Sit-110085	Setaria italica	86.51	3.00e-62	229.00
IUUC-Sly-111884	Solanum lycopersicum	88.28	7.00e-63	230.00
IUUC-Stu-112385	Solanum tuberosum	85.83	6.00e-61	224.00
IUUC-Sar-112942	Sorex araneus	92.19	7.00e-66	240.00
IUUC-Sbi-114790	Sorghum bicolor	89.06	4.00e-64	234.00
IUUC-Sre-114908	Sporisorium reilianum	92.97	3.00e-67	245.00
IUUC-Ssc-116417	Sus scrofa	92.97	2.00e-66	242.00
IUUC-Tru-117557	Takifugu rubripes	92.97	3.00e-66	241.00
IUUC-Tni-119715	Tetraodon nigroviridis	92.97	3.00e-66	241.00
IUUC-Tca-121404	Theobroma cacao	89.06	2.00e-63	233.00
IUUC-Tvi-122611	Trichoderma virens	88.28	3.00e-65	238.00
IUUC-Tae-125787	Triticum aestivum	85.04	4.00e-60	221.00
IUUC-Tur-126527	Triticum urartu	88.28	5.00e-63	231.00
IUUC-Tme-127138	Tuber melanosporum	89.60	2.00e-64	236.00
IUUC-Tbe-127851	Tupaia belangeri	98.68	5.00e-40	154.00
IUUC-Ttr-128939	Tursiops truncatus	92.97	2.00e-66	242.00
IUUC-Uma-129619	Ustilago maydis	92.97	3.00e-67	245.00
IUUC-Vda-129775	Verticillium dahliae	88.89	2.00e-64	236.00
IUUC-Vvi-130859	Vitis vinifera	89.84	5.00e-64	234.00
IUUC-Xtr-131921	Xenopus tropicalis	92.97	2.00e-66	242.00
IUUC-Xma-134071	Xiphophorus maculatus	93.75	1.00e-66	243.00
IUUC-Yli-134671	Yarrowia lipolytica	89.84	9.00e-66	240.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence