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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Mmu-063235
UUCD1 version UUC-MuM-00595
Ensembl Protein ID ENSMUSP00000024817.7
UniProt Accession Q8VC56; Q4FJV7; Q9JK13; RNF8_MOUSE
Genbank Protein ID BAC36236.1; BAE27732.1; CAJ18503.1; AAH21778.1; CAB92239.1
Protein Name E3 ubiquitin-protein ligase RNF8; ActA-interacting protein 37; LaXp180; RING finger protein 8; RING-type E3 ubiquitin transferase RNF8
Genbank Nucleotide ID AK076180; AK147168; CT010295; BC021778; AJ242721
Gene Name Rnf8
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMUSG00000090083.10 ENSMUST00000024817.13 ENSMUSP00000024817.7
ENSMUSG00000090083.10 ENSMUST00000162588.1 ENSMUSP00000124566.1
ENSMUSG00000090083.10 ENSMUST00000172485.7 ENSMUSP00000134697.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressGXD
DNA & RNA Element
microRNATRANSFACRepTarRAID2
Protein-protein Interaction
IIDiRefIndexHINTMentha
Post-translational Modifications (PTMs)
dbPAFPhosphositePlusdbPTM
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/RING 1.80e-06 29.5 406 444
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
    C+iC e f + ++l+C H f+ C++ w +++ CP+Cr
   Q: 406 CIICSEYFIE-AVTLNCAHSFCSFCINEW------MKRKVECPICR 444
    ********99.899***************......**********8 PP
   

Organism Mus musculus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53BP1 and BRCA1 ionizing radiation-induced foci (IRIF). Also controls the recruitment of UIMC1-BRCC3 (RAP80-BRCC36) and PAXIP1/PTIP to DNA damage sites. Also recruited at DNA interstrand cross-links (ICLs) sites and catalyzes 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Promotes the formation of 'Lys-63'-linked polyubiquitin chains via interactions with the specific ubiquitin-conjugating UBE2N/UBC13 and ubiquitinates non-histone substrates such as PCNA. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation. Also catalyzes the formation of 'Lys-48'-linked polyubiquitin chains via interaction with the ubiquitin-conjugating UBE2L6/UBCH8, leading to degradation of substrate proteins such as CHEK2, JMJD2A/KDM4A and KU80/XRCC5: it is still unclear how the preference toward 'Lys-48'- versus 'Lys-63'-linked ubiquitination is regulated but it could be due to RNF8 ability to interact with specific E2 specific ligases. For instance, interaction with phosphorylated HERC2 promotes the association between RNF8 and UBE2N/UBC13 and favors the specific formation of 'Lys-63'-linked ubiquitin chains. Promotes non-homologous end joining (NHEJ) by promoting the 'Lys-48'-linked ubiquitination and degradation the of KU80/XRCC5. Following DNA damage, mediates the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF168, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Following DNA damage, mediates the ubiquitination and degradation of POLD4/p12, a subunit of DNA polymerase delta. In the absence of POLD4, DNA polymerase delta complex exhibits higher proofreading activity. In addition to its function in damage signaling, also plays a role in higher-order chromatin structure by mediating extensive chromatin decondensation. Involved in the activation of ATM by promoting histone H2B ubiquitination, which indirectly triggers histone H4 'Lys-16' acetylation (H4K16ac), establishing a chromatin environment that promotes efficient activation of ATM kinase. Required in the testis, where it plays a role in the replacement of histones during spermatogenesis. At uncapped telomeres, promotes the joining of deprotected chromosome ends by inducing H2A ubiquitination and TP53BP1 recruitment, suggesting that it may enhance cancer development by aggravating telomere-induced genome instability in case of telomeric crisis. Promotes the assembly of RAD51 at DNA DSBs in the absence of BRCA1 and TP53BP1 Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. May be required for proper exit from mitosis after spindle checkpoint activation and may regulate cytokinesis. May play a role in the regulation of RXRA-mediated transcriptional activity. Not involved in RXRA ubiquitination by UBE2E2.
E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53BP1 and BRCA1 ionizing radiation-induced foci (IRIF). Also controls the recruitment of UIMC1-BRCC3 (RAP80-BRCC36) and PAXIP1/PTIP to DNA damage sites. Also recruited at DNA interstrand cross-links (ICLs) sites and catalyzes 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Promotes the formation of 'Lys-63'-linked polyubiquitin chains via interactions with the specific ubiquitin-conjugating UBE2N/UBC13 and ubiquitinates non-histone substrates such as PCNA. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation. Also catalyzes the formation of 'Lys-48'-linked polyubiquitin chains via interaction with the ubiquitin-conjugating UBE2L6/UBCH8, leading to degradation of substrate proteins such as CHEK2, JMJD2A/KDM4A and KU80/XRCC5: it is still unclear how the preference toward 'Lys-48'- versus 'Lys-63'-linked ubiquitination is regulated but it could be due to RNF8 ability to interact with specific E2 specific ligases. For instance, interaction with phosphorylated HERC2 promotes the association between RNF8 and UBE2N/UBC13 and favors the specific formation of 'Lys-63'-linked ubiquitin chains. Promotes non-homologous end joining (NHEJ) by promoting the 'Lys-48'-linked ubiquitination and degradation the of KU80/XRCC5. Following DNA damage, mediates the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF168, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Following DNA damage, mediates the ubiquitination and degradation of POLD4/p12, a subunit of DNA polymerase delta. In the absence of POLD4, DNA polymerase delta complex exhibits higher proofreading activity. In addition to its function in damage signaling, also plays a role in higher-order chromatin structure by mediating extensive chromatin decondensation. Involved in the activation of ATM by promoting histone H2B ubiquitination, which indirectly triggers histone H4 'Lys-16' acetylation (H4K16ac), establishing a chromatin environment that promotes efficient activation of ATM kinase. Required in the testis, where it plays a role in the replacement of histones during spermatogenesis. At uncapped telomeres, promotes the joining of deprotected chromosome ends by inducing H2A ubiquitination and TP53BP1 recruitment, suggesting that it may enhance cancer development by aggravating telomere-induced genome instability in case of telomeric crisis. Promotes the assembly of RAD51 at DNA DSBs in the absence of BRCA1 and TP53BP1 Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. May be required for proper exit from mitosis after spindle checkpoint activation and may regulate cytokinesis. May play a role in the regulation of RXRA-mediated transcriptional activity. Not involved in RXRA ubiquitination by UBE2E2.
Protein Sequence
(Fasta)
MGEPDPLVSG QLAARRSWCL RRLGMDCEWL QLEAGTEVTI GRGLSVTYQL ISKVCPLMIS 60
RSHCVLKQNP EGQWTIMDNK SLNGVWLNRE RLAPLQGYCI RKGDHIQLGV PLESRETAEY 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Mmu-063235|E3,RING|Mus musculus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GCGCACTGCC CGCCTTCCCA GGCCTGGGGC GGGCCCGCGC TCTCAACGCG GTCGATCCCC 60
GGGCGATTGC TTCTGTCTTG TGTGTAGATT AAGTTGCGCG AGAGGAACCT CGGAGGCGGC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Mmu-063235|E3,RING|Mus musculus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0131--Cell cycle
KW-0132--Cell division
KW-0156--Chromatin regulator
KW-0158--Chromosome
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0498--Mitosis
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0779--Telomere
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR000253--FHA_dom
IPR017335--RNF8
IPR008984--SMAD_FHA_domain
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS50006--FHA_DOMAIN
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00498--FHA
PF00097--zf-C3HC4

SMART

SM00240--FHA
SM00184--RING

Gene Ontology

GO:0000781--C:chromosome, telomeric region
GO:0005829--C:cytosol
GO:0030496--C:midbody
GO:0005634--C:nucleus
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0003682--F:chromatin binding
GO:0042393--F:histone binding
GO:0042803--F:protein homodimerization activity
GO:0061630--F:ubiquitin protein ligase activity
GO:0031625--F:ubiquitin protein ligase binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0051301--P:cell division
GO:0006974--P:cellular response to DNA damage stimulus
GO:0006302--P:double-strand break repair
GO:0006303--P:double-strand break repair via nonhomologous end joining
GO:0043486--P:histone exchange
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0033522--P:histone H2A ubiquitination
GO:0033523--P:histone H2B ubiquitination
GO:0045190--P:isotype switching
GO:0007067--P:mitotic nuclear division
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0051865--P:protein autoubiquitination
GO:0070936--P:protein K48-linked ubiquitination
GO:0070534--P:protein K63-linked ubiquitination
GO:0010212--P:response to ionizing radiation
GO:0007286--P:spermatid development
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG mmu:58230
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002124 Ailuropoda melanoleuca 73.76 1.00e-156 546.00
IUUC-Apl-003664 Anas platyrhynchos 74.44 1.00e-36 145.00
IUUC-Aca-005036 Anolis carolinensis 56.24 4.00e-112 398.00
IUUC-Ame-011537 Astyanax mexicanus 41.14 1.00e-83 303.00
IUUC-Bta-013297 Bos taurus 72.69 9.00e-151 526.00
IUUC-Cja-019201 Callithrix jacchus 71.10 6.00e-150 523.00
IUUC-Cfa-021041 Canis familiaris 75.61 4.00e-171 594.00
IUUC-Csa-024133 Chlorocebus sabaeus 71.46 3.00e-164 571.00
IUUC-Cho-024624 Choloepus hoffmanni 65.76 3.00e-109 388.00
IUUC-Dre-027918 Danio rerio 40.62 5.00e-78 285.00
IUUC-Dno-029774 Dasypus novemcinctus 73.98 3.00e-171 594.00
IUUC-Dor-030190 Dipodomys ordii 66.60 3.00e-125 441.00
IUUC-Ete-032301 Echinops telfairi 59.38 2.00e-119 422.00
IUUC-Eca-033607 Equus caballus 75.61 3.00e-149 521.00
IUUC-Eeu-034888 Erinaceus europaeus 73.70 7.00e-109 387.00
IUUC-Fca-036075 Felis catus 71.93 2.00e-167 582.00
IUUC-Fal-037569 Ficedula albicollis 56.43 1.00e-107 383.00
IUUC-Gmo-038588 Gadus morhua 38.94 1.00e-67 250.00
IUUC-Gga-040777 Gallus gallus 55.71 3.00e-111 395.00
IUUC-Ggo-045269 Gorilla gorilla 71.05 8.00e-165 573.00
IUUC-Hsa-046249 Homo sapiens 71.05 3.00e-160 558.00
IUUC-Itr-048314 Ictidomys tridecemlineatus 74.90 3.00e-175 607.00
IUUC-Lch-049805 Latimeria chalumnae 48.04 4.00e-100 358.00
IUUC-Loc-052377 Lepisosteus oculatus 46.30 7.00e-85 307.00
IUUC-Mcc-055344 Macaca mulatta 71.46 4.00e-165 574.00
IUUC-Meu-055950 Macropus eugenii 58.42 1.00e-111 396.00
IUUC-Mga-060049 Meleagris gallopavo 55.03 2.00e-106 379.00
IUUC-Mmr-061431 Microcebus murinus 73.25 2.00e-155 542.00
IUUC-Mpu-066449 Mustela putorius furo 74.85 8.00e-176 610.00
IUUC-Mlu-067588 Myotis lucifugus 71.49 1.00e-150 526.00
IUUC-Nle-069192 Nomascus leucogenys 71.05 4.00e-164 571.00
IUUC-Opr-070300 Ochotona princeps 59.16 4.00e-124 438.00
IUUC-Ont-071998 Oreochromis niloticus 42.74 1.00e-68 253.00
IUUC-Oan-073610 Ornithorhynchus anatinus 63.91 2.00e-64 238.00
IUUC-Ocu-074603 Oryctolagus cuniculus 70.90 2.00e-156 545.00
IUUC-Oga-088183 Otolemur garnettii 74.54 3.00e-175 608.00
IUUC-Oar-090255 Ovis aries 73.27 3.00e-136 478.00
IUUC-Ptr-091029 Pan troglodytes 71.02 2.00e-151 529.00
IUUC-Pan-092241 Papio anubis 71.46 9.00e-166 576.00
IUUC-Psi-093506 Pelodiscus sinensis 56.85 6.00e-116 410.00
IUUC-Pab-098530 Pongo abelii 71.27 7.00e-153 533.00
IUUC-Pca-100939 Procavia capensis 54.43 3.00e-116 412.00
IUUC-Pva-103148 Pteropus vampyrus 69.67 2.00e-156 545.00
IUUC-Rno-105338 Rattus norvegicus 90.35 0.00e+00 819.00
IUUC-Sce-106282 Saccharomyces cerevisiae 32.08 3.00e-07 49.70
IUUC-Sha-107187 Sarcophilus harrisii 60.49 7.00e-91 327.00
IUUC-Sar-113356 Sorex araneus 61.52 4.00e-117 414.00
IUUC-Tru-117910 Takifugu rubripes 38.35 6.00e-61 228.00
IUUC-Tsy-119329 Tarsius syrichta 68.74 2.00e-139 488.00
IUUC-Tni-120521 Tetraodon nigroviridis 38.11 3.00e-62 232.00
IUUC-Ttr-128997 Tursiops truncatus 67.63 1.00e-149 522.00
IUUC-Vpa-130154 Vicugna pacos 70.70 3.00e-167 581.00
IUUC-Vvi-131562 Vitis vinifera 31.63 5.00e-08 51.20
Created Date 25-Jun-2017

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