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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Rno-104906
Ensembl Protein ID ENSRNOP00000028589.1
UniProt Accession O88321; O88321_RAT
Genbank Protein ID BAA32596.1; EDL85758.1
Protein Name Antisecretory factor; Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 4, isoform CRA_a; Proteasome 26S subunit, non-ATPase 4
Genbank Nucleotide ID AC130969; CH474015
Gene Name Psmd4; rCG_51785
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000021042.6 ENSRNOT00000028589.4 ENSRNOP00000028589.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNAmiRNAMap
Protein-protein Interaction
IIDiRefIndexPINAHINT
Post-translational Modifications (PTMs)
CPLMdbPAF
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
UBD/Alpha-Helix/UIM 42.53 1.00e-65 247.00 IUUC-Ath-007436
UBD/Alpha-Helix/UIM 57.40 2.00e-106 383.00 IUUC-Dme-032000
UBD/Alpha-Helix/UIM 50.00 9.00e-54 205.00 IUUC-Sce-106427
UBD/Alpha-Helix/UIM 47.35 2.00e-54 207.00 IUUC-Spo-108378
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MVLESTMVCV DNSEYMRNGD FLPTRLQAQQ DAVNIVCHSK TRSNPENNVG LITLANDCEV 60
LTTLTPDTGR ILSKLHTVQP KGKITFCTGI RVAHLALKHR QGKNHKMRII AFVGSPVEDN 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Rno-104906|UBD,UIM|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGCCAGGCCA ATCGGAGGTG CTGTTGTTTG TCAGTCCCGG AGCCGGTCCG CAAAGGAAAG 60
GTGGCAAGAT GGTGTTGGAG AGCACTATGG TTTGGTGAGG AACTTCGGAC GTGGCCGGGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Rno-104906|UBD,UIM|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0647--Proteasome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR027040--Proteasome_su_Rpn10
IPR003903--UIM_dom
IPR002035--VWF_A

PROSITE

PS50330--UIM
PS50234--VWFA

Pfam

PF02809--UIM
PF13519--VWA_2

SMART

SM00726--UIM
SM00327--VWA

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0008540--C:proteasome regulatory particle, base subcomplex
GO:0031593--F:polyubiquitin binding
GO:0008134--F:transcription factor binding
GO:0042044--P:fluid transport
GO:0043248--P:proteasome assembly
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG rno:83499
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001241 Ailuropoda melanoleuca 97.54 0.00e+00 630.00
IUUC-Atr-002938 Amborella trichopoda 41.95 5.00e-66 244.00
IUUC-Apl-003881 Anas platyrhynchos 97.13 3.00e-110 390.00
IUUC-Aca-004397 Anolis carolinensis 97.32 3.00e-120 424.00
IUUC-Aly-005564 Arabidopsis lyrata 50.85 3.00e-53 202.00
IUUC-Ath-007436 Arabidopsis thaliana 50.85 4.00e-53 201.00
IUUC-Ago-007858 Ashbya gossypii 51.30 1.00e-58 219.00
IUUC-Acl-008094 Aspergillus clavatus 45.45 2.00e-38 152.00
IUUC-Afl-008689 Aspergillus flavus 46.75 6.00e-39 154.00
IUUC-Afu-008959 Aspergillus fumigatus 46.29 8.00e-39 153.00
IUUC-Ani-009344 Aspergillus nidulans 43.01 2.00e-23 102.00
IUUC-Ang-009602 Aspergillus niger 45.45 3.00e-37 148.00
IUUC-Aor-009906 Aspergillus oryzae 44.74 1.00e-24 106.00
IUUC-Ate-010267 Aspergillus terreus 44.50 2.00e-30 125.00
IUUC-Ame-011018 Astyanax mexicanus 87.16 2.00e-174 604.00
IUUC-Bgr-012200 Blumeria graminis 50.00 5.00e-49 187.00
IUUC-Bta-013066 Bos taurus 97.82 0.00e+00 626.00
IUUC-Bci-013904 Botrytis cinerea 51.90 1.00e-49 189.00
IUUC-Bdi-014537 Brachypodium distachyon 49.58 8.00e-53 201.00
IUUC-Bol-015474 Brassica oleracea 50.42 2.00e-52 199.00
IUUC-Bra-018039 Brassica rapa 50.42 1.00e-52 200.00
IUUC-Cel-018187 Caenorhabditis elegans 43.98 6.00e-66 244.00
IUUC-Cja-019738 Callithrix jacchus 98.91 0.00e+00 636.00
IUUC-Cfa-020362 Canis familiaris 97.54 0.00e+00 631.00
IUUC-Cpo-021297 Cavia porcellus 97.21 2.00e-173 603.00
IUUC-Cre-022783 Chlamydomonas reinhardtii 49.58 4.00e-46 177.00
IUUC-Cho-024800 Choloepus hoffmanni 96.33 2.00e-56 213.00
IUUC-Cin-025469 Ciona intestinalis 55.71 6.00e-91 327.00
IUUC-Csv-026297 Ciona savignyi 55.92 7.00e-102 363.00
IUUC-Cgl-026657 Colletotrichum gloeosporioides 48.95 2.00e-39 155.00
IUUC-Cne-027027 Cryptococcus neoformans 47.14 3.00e-49 188.00
IUUC-Cme-027212 Cyanidioschyzon merolae 41.03 8.00e-47 181.00
IUUC-Dre-027759 Danio rerio 86.34 6.00e-171 593.00
IUUC-Dno-029528 Dasypus novemcinctus 98.91 0.00e+00 636.00
IUUC-Dor-030255 Dipodomys ordii 97.77 4.00e-177 613.00
IUUC-Dse-031464 Dothistroma septosporum 49.79 1.00e-53 202.00
IUUC-Dme-032000 Drosophila melanogaster 68.44 2.00e-87 315.00
IUUC-Ete-032762 Echinops telfairi 98.64 0.00e+00 639.00
IUUC-Eca-034399 Equus caballus 96.16 1.00e-180 627.00
IUUC-Eeu-035072 Erinaceus europaeus 97.75 4.00e-148 517.00
IUUC-Fca-035993 Felis catus 97.48 3.00e-176 610.00
IUUC-Fal-037623 Ficedula albicollis 66.11 6.00e-121 427.00
IUUC-Fox-037746 Fusarium oxysporum 47.03 2.00e-49 188.00
IUUC-Fso-038431 Fusarium solani 49.15 3.00e-50 191.00
IUUC-Gmo-039290 Gadus morhua 82.29 3.00e-143 501.00
IUUC-Ggr-039821 Gaeumannomyces graminis 48.70 3.00e-41 162.00
IUUC-Gga-040288 Gallus gallus 94.28 3.00e-174 603.00
IUUC-Gac-042587 Gasterosteus aculeatus 83.70 1.00e-163 570.00
IUUC-Gma-044042 Glycine max 52.17 2.00e-57 216.00
IUUC-Ggo-044628 Gorilla gorilla 98.91 0.00e+00 636.00
IUUC-Hsa-045850 Homo sapiens 98.09 0.00e+00 649.00
IUUC-Hvu-047715 Hordeum vulgare 49.58 3.00e-52 199.00
IUUC-Itr-048388 Ictidomys tridecemlineatus 97.51 7.00e-179 619.00
IUUC-Kpa-049158 Komagataella pastoris 54.79 4.00e-56 211.00
IUUC-Lch-050472 Latimeria chalumnae 90.48 5.00e-165 575.00
IUUC-Lpe-051233 Leersia perrieri 48.73 4.00e-49 190.00
IUUC-Loc-052437 Lepisosteus oculatus 76.59 3.00e-90 327.00
IUUC-Lma-053295 Leptosphaeria maculans 52.50 3.00e-48 185.00
IUUC-Laf-053504 Loxodonta africana 98.64 0.00e+00 636.00
IUUC-Mcc-054877 Macaca mulatta 98.91 0.00e+00 635.00
IUUC-Meu-056114 Macropus eugenii 97.55 0.00e+00 645.00
IUUC-Mor-057212 Magnaporthe oryzae 45.99 4.00e-44 171.00
IUUC-Mpo-057587 Magnaporthe poae 49.74 4.00e-42 165.00
IUUC-Mtr-058520 Medicago truncatula 40.52 4.00e-56 211.00
IUUC-Mla-059105 Melampsora laricipopulina 41.84 6.00e-19 88.20
IUUC-Mga-059537 Meleagris gallopavo 92.92 1.00e-178 619.00
IUUC-Mvi-060277 Microbotryum violaceum 37.15 2.00e-39 155.00
IUUC-Mmr-061736 Microcebus murinus 97.82 2.00e-178 617.00
IUUC-Mdo-062403 Monodelphis domestica 97.48 3.00e-180 625.00
IUUC-Mmu-063937 Mus musculus 96.73 9.00e-178 615.00
IUUC-Mac-065367 Musa acuminata 41.06 2.00e-58 219.00
IUUC-Mpu-065901 Mustela putorius furo 97.54 0.00e+00 630.00
IUUC-Mlu-067994 Myotis lucifugus 97.28 0.00e+00 643.00
IUUC-Nfi-068540 Neosartorya fischeri 46.29 8.00e-39 153.00
IUUC-Ncr-068760 Neurospora crassa 49.58 1.00e-52 200.00
IUUC-Nle-069463 Nomascus leucogenys 98.91 0.00e+00 636.00
IUUC-Opr-070298 Ochotona princeps 98.09 0.00e+00 634.00
IUUC-Ont-072615 Oreochromis niloticus 87.67 1.00e-174 605.00
IUUC-Ocu-074141 Oryctolagus cuniculus 98.09 0.00e+00 638.00
IUUC-Oba-075955 Oryza barthii 48.73 7.00e-50 191.00
IUUC-Obr-076545 Oryza brachyantha 48.31 2.00e-48 186.00
IUUC-Ogl-077252 Oryza glaberrima 48.31 1.00e-47 183.00
IUUC-Ogu-078986 Oryza glumaepatula 48.73 1.00e-49 190.00
IUUC-Oin-080166 Oryza indica 47.64 9.00e-48 184.00
IUUC-Olo-080390 Oryza longistaminata 48.05 1.00e-46 181.00
IUUC-Ome-082015 Oryza meridionalis 48.73 6.00e-50 191.00
IUUC-Oni-082397 Oryza nivara 48.73 7.00e-50 191.00
IUUC-Opu-083674 Oryza punctata 48.73 5.00e-50 191.00
IUUC-Oru-085199 Oryza rufipogon 48.73 7.00e-50 191.00
IUUC-Osa-085911 Oryza sativa 48.73 7.00e-50 191.00
IUUC-Ola-087383 Oryzias latipes 86.87 5.00e-168 584.00
IUUC-Olu-087857 Ostreococcus lucimarinus 48.42 2.00e-45 175.00
IUUC-Oga-088882 Otolemur garnettii 97.49 1.00e-178 619.00
IUUC-Oar-089311 Ovis aries 97.82 0.00e+00 625.00
IUUC-Ptr-090931 Pan troglodytes 98.09 0.00e+00 649.00
IUUC-Pan-092286 Papio anubis 98.09 0.00e+00 648.00
IUUC-Psi-093908 Pelodiscus sinensis 93.09 1.00e-168 585.00
IUUC-Pma-094737 Petromyzon marinus 77.75 3.00e-139 488.00
IUUC-Pno-094807 Phaeosphaeria nodorum 52.10 5.00e-54 204.00
IUUC-Ppa-095749 Physcomitrella patens 48.35 2.00e-52 199.00
IUUC-Pfo-097212 Poecilia formosa 86.58 3.00e-173 600.00
IUUC-Pab-097708 Pongo abelii 98.04 0.00e+00 630.00
IUUC-Pop-099138 Populus trichocarpa 41.90 7.00e-64 237.00
IUUC-Pca-100722 Procavia capensis 100.00 2.00e-63 236.00
IUUC-Ppe-101877 Prunus persica 41.91 2.00e-71 262.00
IUUC-Pva-103185 Pteropus vampyrus 98.09 0.00e+00 635.00
IUUC-Pgr-103361 Puccinia graminis 39.83 3.00e-31 129.00
IUUC-Ptt-103848 Puccinia triticina 35.54 7.00e-15 74.30
IUUC-Pte-104114 Pyrenophora teres 50.43 4.00e-49 187.00
IUUC-Pyt-104662 Pyrenophora triticirepentis 51.05 1.00e-52 199.00
IUUC-Sce-106427 Saccharomyces cerevisiae 48.73 3.00e-55 208.00
IUUC-Sha-106574 Sarcophilus harrisii 95.93 0.00e+00 632.00
IUUC-Sja-107706 Schizosaccharomyces japonicus 48.85 4.00e-49 187.00
IUUC-Spo-108378 Schizosaccharomyces pombe 46.51 2.00e-51 195.00
IUUC-Smo-109639 Selaginella moellendorffii 48.98 8.00e-53 201.00
IUUC-Sit-110284 Setaria italica 50.85 9.00e-50 191.00
IUUC-Sly-111246 Solanum lycopersicum 38.67 1.00e-60 226.00
IUUC-Stu-112695 Solanum tuberosum 37.93 1.00e-60 226.00
IUUC-Sar-113015 Sorex araneus 98.81 7.00e-98 350.00
IUUC-Sbi-114495 Sorghum bicolor 50.85 4.00e-50 191.00
IUUC-Sre-114891 Sporisorium reilianum 53.88 2.00e-58 219.00
IUUC-Ssc-116142 Sus scrofa 97.82 0.00e+00 647.00
IUUC-Tgu-116946 Taeniopygia guttata 89.68 1.00e-127 448.00
IUUC-Tru-118485 Takifugu rubripes 85.96 6.00e-165 574.00
IUUC-Tsy-119004 Tarsius syrichta 96.78 1.00e-150 526.00
IUUC-Tni-120074 Tetraodon nigroviridis 87.67 7.00e-174 603.00
IUUC-Tca-121251 Theobroma cacao 40.05 3.00e-55 208.00
IUUC-Tre-122168 Trichoderma reesei 49.79 8.00e-54 203.00
IUUC-Tvi-122655 Trichoderma virens 49.36 4.00e-50 191.00
IUUC-Tae-124568 Triticum aestivum 49.58 4.00e-52 198.00
IUUC-Tur-126420 Triticum urartu 49.58 5.00e-52 198.00
IUUC-Tme-126937 Tuber melanosporum 54.01 3.00e-55 208.00
IUUC-Tbe-128080 Tupaia belangeri 96.73 5.00e-180 623.00
IUUC-Ttr-128811 Tursiops truncatus 98.91 0.00e+00 636.00
IUUC-Uma-129436 Ustilago maydis 54.31 1.00e-59 223.00
IUUC-Vda-129920 Verticillium dahliae 48.35 5.00e-43 167.00
IUUC-Vpa-130762 Vicugna pacos 100.00 4.00e-65 241.00
IUUC-Vvi-130840 Vitis vinifera 50.21 1.00e-55 209.00
IUUC-Xtr-131967 Xenopus tropicalis 90.44 1.00e-116 412.00
IUUC-Xma-134224 Xiphophorus maculatus 86.03 2.00e-171 594.00
IUUC-Yli-134643 Yarrowia lipolytica 54.04 2.00e-53 202.00
IUUC-Zma-135870 Zea mays 41.83 3.00e-56 212.00
Created Date 25-Jun-2017

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