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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Mmu-063355
Ensembl Protein ID ENSMUSP00000019638.8
UniProt Accession O88545; CSN6_MOUSE
Genbank Protein ID AAC33902.1; AAH04664.1; AAH14286.1
Protein Name COP9 signalosome complex subunit 6; JAB1-containing signalosome subunit 6
Genbank Nucleotide ID AF071315; BC004664; BC014286
Gene Name Cops6; Csn6
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMUSG00000019494.14 ENSMUST00000019638.14 ENSMUSP00000019638.8
ENSMUSG00000019494.14 ENSMUST00000132639.1 ENSMUSP00000121554.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressGXD
DNA & RNA Element
microRNATRANSFACRepTarmiRNAMap
RAID2
Protein-protein Interaction
IIDiRefIndexPINAHINT
Mentha
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlusdbPTM
mUbiSiDa
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
DUB/JAMM 91.92 2.00e-154 541.00 IUUC-Dre-028843
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Mus musculus
Functional Description
(View)

Functional Description



     Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Has some glucocorticoid receptor-responsive activity (By similarity). Stabilizes RFWD2/COP1 through reducing RFWD2 auto-ubiquitination and decelerating RFWD2 turnover rate, hence regulates the ubiquitination of RFWD2 targets, including SFN (By similarity).
Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Has some glucocorticoid receptor-responsive activity (By similarity). Stabilizes RFWD2/COP1 through reducing RFWD2 auto-ubiquitination and decelerating RFWD2 turnover rate, hence regulates the ubiquitination of RFWD2 targets, including SFN (By similarity).
Protein Sequence
(Fasta)
MAAAAAAGAN GSGGSSGMEV DAAVPSVMAS GVTGSVSVAL HPLVILNISD HWIRMRSQEG 60
RPMQVIGALI GKQEGRNIEV MNSFELLSHT VEEKIIIDKE YYYTKEEQFK QVFKELEFLG 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Mmu-063355|DUB,JAMM|Mus musculus
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Nucleotide Sequence
(Fasta)
GAGAAGGAAA GGGGCGGGCC GTGGCTGGCG GGCGCGGGGA AAATGGCGGC GGCAGCTGCG 60
GCGGGGGCGA ATGGGAGCGG AGGCAGCAGC GGCATGGAAG TGGATGCAGC AGGTAACGGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Mmu-063355|DUB,JAMM|Mus musculus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0736--Signalosome

Interpro

IPR000555--JAMM/MPN+_dom
IPR033859--MPN_CSN6
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0008180--C:COP9 signalosome
GO:0005737--C:cytoplasm
GO:0070062--C:extracellular exosome
GO:0005654--C:nucleoplasm
GO:0000338--P:protein deneddylation

KEGG mmu:26893
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000900 Aegilops tauschii 36.72 7.00e-56 211.00
IUUC-Aml-001678 Ailuropoda melanoleuca 99.68 2.00e-174 604.00
IUUC-Atr-002442 Amborella trichopoda 39.23 2.00e-50 192.00
IUUC-Aca-004366 Anolis carolinensis 71.91 6.00e-93 333.00
IUUC-Aly-005748 Arabidopsis lyrata 38.51 5.00e-60 224.00
IUUC-Ath-006830 Arabidopsis thaliana 38.19 3.00e-58 218.00
IUUC-Acl-008087 Aspergillus clavatus 29.97 4.00e-26 112.00
IUUC-Afl-008629 Aspergillus flavus 28.36 7.00e-21 94.70
IUUC-Afu-008973 Aspergillus fumigatus 30.00 2.00e-29 123.00
IUUC-Ani-009239 Aspergillus nidulans 27.08 5.00e-20 92.00
IUUC-Ang-009845 Aspergillus niger 31.33 7.00e-31 128.00
IUUC-Aor-010137 Aspergillus oryzae 29.01 4.00e-24 105.00
IUUC-Ate-010588 Aspergillus terreus 36.36 1.00e-22 100.00
IUUC-Ame-011532 Astyanax mexicanus 93.88 1.00e-52 196.00
IUUC-Bgr-012126 Blumeria graminis 30.21 4.00e-20 92.40
IUUC-Bta-012891 Bos taurus 99.68 4.00e-174 603.00
IUUC-Bci-013650 Botrytis cinerea 28.69 8.00e-29 121.00
IUUC-Bdi-014189 Brachypodium distachyon 40.69 1.00e-56 213.00
IUUC-Bol-015194 Brassica oleracea 37.62 2.00e-59 222.00
IUUC-Bra-017180 Brassica rapa 38.44 7.00e-59 220.00
IUUC-Cel-018511 Caenorhabditis elegans 33.72 1.00e-31 130.00
IUUC-Cja-019862 Callithrix jacchus 98.71 2.00e-173 601.00
IUUC-Cfa-020552 Canis familiaris 99.68 1.00e-173 602.00
IUUC-Cpo-022433 Cavia porcellus 99.35 1.00e-173 602.00
IUUC-Cre-022699 Chlamydomonas reinhardtii 35.11 1.00e-46 180.00
IUUC-Csa-023484 Chlorocebus sabaeus 98.71 1.00e-173 602.00
IUUC-Cho-024874 Choloepus hoffmanni 85.91 3.00e-129 454.00
IUUC-Cin-025747 Ciona intestinalis 58.33 1.00e-101 362.00
IUUC-Csv-025914 Ciona savignyi 59.33 3.00e-105 374.00
IUUC-Cgl-026665 Colletotrichum gloeosporioides 28.35 5.00e-27 115.00
IUUC-Cne-026818 Cryptococcus neoformans 35.71 3.00e-49 188.00
IUUC-Dre-028843 Danio rerio 91.92 2.00e-165 574.00
IUUC-Dno-029674 Dasypus novemcinctus 99.68 5.00e-174 603.00
IUUC-Dme-032196 Drosophila melanogaster 61.95 6.00e-117 413.00
IUUC-Ete-032593 Echinops telfairi 72.56 8.00e-74 269.00
IUUC-Eca-033933 Equus caballus 99.68 2.00e-174 605.00
IUUC-Fca-035946 Felis catus 99.68 4.00e-174 603.00
IUUC-Fso-038175 Fusarium solani 26.23 3.00e-22 99.40
IUUC-Gmo-038747 Gadus morhua 91.23 1.00e-160 558.00
IUUC-Gac-042199 Gasterosteus aculeatus 90.91 2.00e-160 557.00
IUUC-Gma-043702 Glycine max 40.13 3.00e-61 228.00
IUUC-Ggo-044978 Gorilla gorilla 99.34 1.00e-170 592.00
IUUC-Hsa-045797 Homo sapiens 99.35 3.00e-174 603.00
IUUC-Hvu-047511 Hordeum vulgare 39.68 1.00e-59 223.00
IUUC-Itr-048615 Ictidomys tridecemlineatus 99.67 3.00e-175 607.00
IUUC-Lch-049546 Latimeria chalumnae 87.11 3.00e-130 457.00
IUUC-Lpe-051207 Leersia perrieri 39.60 5.00e-59 221.00
IUUC-Loc-052106 Lepisosteus oculatus 92.86 1.00e-162 565.00
IUUC-Lma-053122 Leptosphaeria maculans 26.04 6.00e-24 105.00
IUUC-Laf-054454 Loxodonta africana 100.00 1.00e-169 588.00
IUUC-Mcc-054679 Macaca mulatta 99.67 7.00e-174 602.00
IUUC-Meu-056427 Macropus eugenii 95.78 2.00e-166 577.00
IUUC-Mor-057093 Magnaporthe oryzae 24.13 7.00e-24 104.00
IUUC-Mtr-058343 Medicago truncatula 40.32 1.00e-60 226.00
IUUC-Mla-059002 Melampsora laricipopulina 36.04 1.00e-42 167.00
IUUC-Mvi-060487 Microbotryum violaceum 35.86 6.00e-52 197.00
IUUC-Mmr-060577 Microcebus murinus 99.68 6.00e-174 603.00
IUUC-Mdo-061918 Monodelphis domestica 99.35 1.00e-173 602.00
IUUC-Mac-064465 Musa acuminata 41.39 3.00e-62 231.00
IUUC-Mpu-066813 Mustela putorius furo 99.68 5.00e-174 603.00
IUUC-Mlu-067500 Myotis lucifugus 99.35 1.00e-173 602.00
IUUC-Nfi-068452 Neosartorya fischeri 28.98 3.00e-29 122.00
IUUC-Nle-070166 Nomascus leucogenys 99.35 1.00e-173 601.00
IUUC-Opr-071028 Ochotona princeps 99.68 5.00e-174 603.00
IUUC-Ont-072575 Oreochromis niloticus 92.86 9.00e-163 565.00
IUUC-Ocu-074744 Oryctolagus cuniculus 99.03 2.00e-173 601.00
IUUC-Oba-075665 Oryza barthii 39.47 2.00e-59 222.00
IUUC-Obr-076094 Oryza brachyantha 40.16 5.00e-51 194.00
IUUC-Ogl-077223 Oryza glaberrima 39.47 2.00e-59 222.00
IUUC-Ogu-077975 Oryza glumaepatula 39.47 2.00e-59 222.00
IUUC-Oin-079690 Oryza indica 39.14 8.00e-57 213.00
IUUC-Ome-081114 Oryza meridionalis 39.60 1.00e-58 219.00
IUUC-Oni-082275 Oryza nivara 39.47 4.00e-58 218.00
IUUC-Opu-083281 Oryza punctata 39.34 2.00e-58 219.00
IUUC-Oru-084767 Oryza rufipogon 39.47 2.00e-58 219.00
IUUC-Osa-085506 Oryza sativa 39.47 2.00e-58 219.00
IUUC-Ola-086468 Oryzias latipes 92.46 2.00e-162 564.00
IUUC-Oga-088732 Otolemur garnettii 98.40 1.00e-173 602.00
IUUC-Oar-089714 Ovis aries 100.00 1.00e-171 595.00
IUUC-Ptr-091383 Pan troglodytes 99.03 7.00e-173 599.00
IUUC-Pan-091752 Papio anubis 98.71 1.00e-173 602.00
IUUC-Psi-094080 Pelodiscus sinensis 92.69 2.00e-168 584.00
IUUC-Pma-094665 Petromyzon marinus 63.27 2.00e-28 117.00
IUUC-Ppa-095312 Physcomitrella patens 43.06 2.00e-68 252.00
IUUC-Pfo-096180 Poecilia formosa 92.86 2.00e-163 567.00
IUUC-Pab-098521 Pongo abelii 99.35 1.00e-173 602.00
IUUC-Pop-099014 Populus trichocarpa 41.47 1.00e-61 229.00
IUUC-Pca-100331 Procavia capensis 99.23 4.00e-155 540.00
IUUC-Ppe-101223 Prunus persica 36.31 2.00e-54 206.00
IUUC-Pva-103061 Pteropus vampyrus 99.68 5.00e-174 603.00
IUUC-Pgr-103302 Puccinia graminis 33.66 3.00e-38 152.00
IUUC-Ptt-103773 Puccinia triticina 34.97 2.00e-43 169.00
IUUC-Pte-104297 Pyrenophora teres 34.16 7.00e-22 98.20
IUUC-Rno-105606 Rattus norvegicus 99.67 1.00e-174 605.00
IUUC-Sha-106621 Sarcophilus harrisii 99.35 6.00e-174 602.00
IUUC-Ssl-108446 Sclerotinia sclerotiorum 29.17 6.00e-27 115.00
IUUC-Smo-108791 Selaginella moellendorffii 42.32 2.00e-63 235.00
IUUC-Sit-110800 Setaria italica 39.67 5.00e-58 218.00
IUUC-Sly-111003 Solanum lycopersicum 39.54 3.00e-60 225.00
IUUC-Stu-112083 Solanum tuberosum 39.80 9.00e-61 226.00
IUUC-Sar-113677 Sorex araneus 81.16 4.00e-27 115.00
IUUC-Sbi-113936 Sorghum bicolor 38.96 3.00e-57 215.00
IUUC-Sre-114955 Sporisorium reilianum 35.36 2.00e-50 192.00
IUUC-Tru-118518 Takifugu rubripes 91.88 2.00e-162 564.00
IUUC-Tsy-119285 Tarsius syrichta 100.00 7.00e-24 103.00
IUUC-Tni-120511 Tetraodon nigroviridis 92.21 7.00e-163 566.00
IUUC-Tca-121233 Theobroma cacao 38.85 8.00e-60 223.00
IUUC-Tae-123297 Triticum aestivum 39.68 7.00e-60 224.00
IUUC-Tur-126485 Triticum urartu 32.80 1.00e-41 163.00
IUUC-Tme-127071 Tuber melanosporum 32.42 2.00e-34 139.00
IUUC-Tbe-127457 Tupaia belangeri 96.10 7.00e-162 562.00
IUUC-Ttr-128708 Tursiops truncatus 96.35 8.00e-163 565.00
IUUC-Uma-129646 Ustilago maydis 35.96 4.00e-53 201.00
IUUC-Vpa-130606 Vicugna pacos 97.14 6.00e-76 277.00
IUUC-Vvi-131045 Vitis vinifera 39.48 4.00e-60 224.00
IUUC-Xtr-132674 Xenopus tropicalis 91.88 1.00e-172 598.00
IUUC-Xma-133413 Xiphophorus maculatus 92.53 6.00e-163 566.00
IUUC-Yli-134661 Yarrowia lipolytica 36.97 1.00e-31 130.00
IUUC-Zma-135166 Zea mays 39.16 1.00e-57 216.00
Created Date 25-Jun-2017

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