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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Sce-106437
UUCD1 version UUC-SaC-00188
Ensembl Protein ID YLR208W
UniProt Accession Q04491; D6VYK9; SEC13_YEAST
Genbank Protein ID AAA35028.1; AAB67426.1; DAA09525.1
Protein Name Protein transport protein SEC13
Genbank Nucleotide ID L05929; U14913; BK006945
Gene Name SEC13; ANU3; YLR208W; L8167.4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
YLR208W YLR208W YLR208W
Annotation
mRNA Expression
GEOFFGED
Protein-protein Interaction
IIDiRefIndexHINTMentha
Protein 3D Structure
PDBMMDB
Post-translational Modifications (PTMs)
CPLMBioGRID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 5.80e-29 97.4 51 83
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd..tllvsGsdDgtikvWD 29
    gH+++v+ +++ + t+l+s+s+Dg++ +W
   Q: 51 GHEGPVWRVDWahPKfgTILASCSYDGKVLIWK 83
    8***********9555599*************8 PP
   

Organism Saccharomyces cerevisiae
Functional Description
(View)

Functional Description



     Functions as a component of the nuclear pore complex (NPC) and the COPII coat. It is one of 5 proteins constituting the COPII coat, which is involved in anterograde (ER to Golgi) double-membrane transport vesicle formation. First the small GTPase SAR1, activated by and binding to the integral ER membrane protein SEC12, exchanges GDP for GTP and recruits the heterodimer SEC23/24, which in turn recruits the heterotetramer SEC13-SEC31. The polymerization of COPII coat complexes then causes physically the deformation (budding) of the membrane, leading to the creation of a transport vesicle. The COPII complex is dissociated upon SAR1-GTP hydrolysis to SAR1-GDP. SEC23 functions as the SAR1 GTPase activating protein, whose activity is stimulated in the presence of SEC13/31. SEC13 is directly or indirectly required for normal ER membrane and nuclear envelope morphology. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution. Component of the SEA complex which coats the vacuolar membrane and is involved in intracellular trafficking, autophagy, response to nitrogen starvation, and amino acid biogenesis.
Functions as a component of the nuclear pore complex (NPC) and the COPII coat. It is one of 5 proteins constituting the COPII coat, which is involved in anterograde (ER to Golgi) double-membrane transport vesicle formation. First the small GTPase SAR1, activated by and binding to the integral ER membrane protein SEC12, exchanges GDP for GTP and recruits the heterodimer SEC23/24, which in turn recruits the heterotetramer SEC13-SEC31. The polymerization of COPII coat complexes then causes physically the deformation (budding) of the membrane, leading to the creation of a transport vesicle. The COPII complex is dissociated upon SAR1-GTP hydrolysis to SAR1-GDP. SEC23 functions as the SAR1 GTPase activating protein, whose activity is stimulated in the presence of SEC13/31. SEC13 is directly or indirectly required for normal ER membrane and nuclear envelope morphology. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution. Component of the SEA complex which coats the vacuolar membrane and is involved in intracellular trafficking, autophagy, response to nitrogen starvation, and amino acid biogenesis.
Protein Sequence
(Fasta)
MVVIANAHNE LIHDAVLDYY GKRLATCSSD KTIKIFEVEG ETHKLIDTLT GHEGPVWRVD 60
WAHPKFGTIL ASCSYDGKVL IWKEENGRWS QIAVHAVHSA SVNSVQWAPH EYGPLLLVAS 120
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Protein Fasta Sequence



>IUUC-Sce-106437|E3,WD_repeat|Saccharomyces cerevisiae
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Nucleotide Sequence
(Fasta)
ATGGTCGTCA TAGCTAATGC GCACAACGAA TTAATCCATG ACGCTGTTCT AGACTATTAT 60
GGGAAGCGCC TTGCAACCTG CTCTTCTGAC AAGACAATCA AGATCTTTGA AGTCGAAGGA 120
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Nucleotide Fasta Sequence



>IUUC-Sce-106437|E3,WD_repeat|Saccharomyces cerevisiae
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Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0968--Cytoplasmic vesicle
KW-0903--Direct protein sequencing
KW-0256--Endoplasmic reticulum
KW-0931--ER-Golgi transport
KW-0472--Membrane
KW-0509--mRNA transport
KW-0906--Nuclear pore complex
KW-0539--Nucleus
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0811--Translocation
KW-0813--Transport
KW-0926--Vacuole
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0030127--C:COPII vesicle coat
GO:0005789--C:endoplasmic reticulum membrane
GO:0000139--C:Golgi membrane
GO:0031080--C:nuclear pore outer ring
GO:0035859--C:Seh1-associated complex
GO:0005774--C:vacuolar membrane
GO:0042802--F:identical protein binding
GO:0005198--F:structural molecule activity
GO:0090114--P:COPII-coated vesicle budding
GO:0051028--P:mRNA transport
GO:0031081--P:nuclear pore distribution
GO:0043547--P:positive regulation of GTPase activity
GO:1904263--P:positive regulation of TORC1 signaling
GO:0045893--P:positive regulation of transcription, DNA-templated
GO:0015031--P:protein transport
GO:0030433--P:ubiquitin-dependent ERAD pathway

KEGG sce:YLR208W
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000671 Aegilops tauschii 47.12 1.00e-74 270.00
IUUC-Aml-001832 Ailuropoda melanoleuca 51.83 3.00e-83 300.00
IUUC-Atr-002914 Amborella trichopoda 49.32 2.00e-76 276.00
IUUC-Apl-003992 Anas platyrhynchos 52.40 8.00e-79 284.00
IUUC-Aca-005283 Anolis carolinensis 49.35 2.00e-79 286.00
IUUC-Aly-005654 Arabidopsis lyrata 48.29 4.00e-71 259.00
IUUC-Ath-006810 Arabidopsis thaliana 49.32 2.00e-72 263.00
IUUC-Ago-007827 Ashbya gossypii 81.82 7.00e-147 510.00
IUUC-Acl-008205 Aspergillus clavatus 59.53 7.00e-98 347.00
IUUC-Afl-008748 Aspergillus flavus 58.77 5.00e-100 355.00
IUUC-Afu-008791 Aspergillus fumigatus 60.20 5.00e-98 348.00
IUUC-Ani-009152 Aspergillus nidulans 59.09 2.00e-101 360.00
IUUC-Ang-009765 Aspergillus niger 60.39 1.00e-100 357.00
IUUC-Aor-009927 Aspergillus oryzae 59.40 9.00e-98 347.00
IUUC-Ate-010248 Aspergillus terreus 58.77 5.00e-99 352.00
IUUC-Ame-011478 Astyanax mexicanus 49.35 2.00e-80 290.00
IUUC-Bgr-012276 Blumeria graminis 57.48 6.00e-93 331.00
IUUC-Bta-012700 Bos taurus 50.65 9.00e-82 294.00
IUUC-Bci-013722 Botrytis cinerea 55.59 1.00e-94 337.00
IUUC-Bdi-014818 Brachypodium distachyon 48.14 2.00e-75 273.00
IUUC-Bol-015779 Brassica oleracea 48.64 5.00e-71 258.00
IUUC-Bra-016973 Brassica rapa 48.45 4.00e-71 260.00
IUUC-Cel-018479 Caenorhabditis elegans 40.75 2.00e-60 224.00
IUUC-Cja-019956 Callithrix jacchus 51.76 1.00e-76 277.00
IUUC-Cfa-020752 Canis familiaris 51.30 2.00e-82 296.00
IUUC-Cpo-021871 Cavia porcellus 51.50 4.00e-83 299.00
IUUC-Cre-022797 Chlamydomonas reinhardtii 45.05 1.00e-72 264.00
IUUC-Csa-023393 Chlorocebus sabaeus 50.97 2.00e-82 296.00
IUUC-Cho-024786 Choloepus hoffmanni 53.92 3.00e-29 120.00
IUUC-Cin-025332 Ciona intestinalis 48.54 6.00e-79 285.00
IUUC-Csv-025926 Ciona savignyi 49.33 8.00e-79 284.00
IUUC-Cgl-026413 Colletotrichum gloeosporioides 58.02 1.00e-92 330.00
IUUC-Cne-027054 Cryptococcus neoformans 46.06 7.00e-77 278.00
IUUC-Cme-027165 Cyanidioschyzon merolae 35.06 8.00e-49 186.00
IUUC-Dre-027782 Danio rerio 49.50 8.00e-79 285.00
IUUC-Dno-029628 Dasypus novemcinctus 50.83 1.00e-81 294.00
IUUC-Dor-030650 Dipodomys ordii 50.21 8.00e-62 228.00
IUUC-Dse-031206 Dothistroma septosporum 56.19 1.00e-90 323.00
IUUC-Dme-031854 Drosophila melanogaster 49.32 1.00e-73 267.00
IUUC-Ete-032618 Echinops telfairi 36.21 1.00e-42 164.00
IUUC-Eca-033268 Equus caballus 51.83 1.00e-82 297.00
IUUC-Fca-035918 Felis catus 50.97 7.00e-82 295.00
IUUC-Fal-037551 Ficedula albicollis 50.68 9.00e-75 271.00
IUUC-Fox-037763 Fusarium oxysporum 58.19 3.00e-94 335.00
IUUC-Fso-038341 Fusarium solani 57.81 7.00e-91 324.00
IUUC-Gmo-038638 Gadus morhua 49.83 1.00e-79 287.00
IUUC-Ggr-039865 Gaeumannomyces graminis 59.86 2.00e-94 337.00
IUUC-Gga-040193 Gallus gallus 51.30 6.00e-81 291.00
IUUC-Gma-044311 Glycine max 48.45 8.00e-74 268.00
IUUC-Ggo-045252 Gorilla gorilla 50.65 1.00e-81 294.00
IUUC-Hsa-046565 Homo sapiens 50.65 2.00e-81 293.00
IUUC-Hvu-047835 Hordeum vulgare 47.12 1.00e-74 270.00
IUUC-Itr-048587 Ictidomys tridecemlineatus 51.83 7.00e-83 298.00
IUUC-Kpa-049148 Komagataella pastoris 68.35 2.00e-125 439.00
IUUC-Lch-050421 Latimeria chalumnae 50.50 5.00e-80 288.00
IUUC-Lpe-051187 Leersia perrieri 47.51 7.00e-74 271.00
IUUC-Loc-052167 Lepisosteus oculatus 48.50 6.00e-80 288.00
IUUC-Lma-053250 Leptosphaeria maculans 59.52 2.00e-92 330.00
IUUC-Laf-054304 Loxodonta africana 51.50 3.00e-82 296.00
IUUC-Mcc-055519 Macaca mulatta 51.16 3.00e-82 296.00
IUUC-Meu-056439 Macropus eugenii 51.83 2.00e-82 296.00
IUUC-Mor-057241 Magnaporthe oryzae 60.21 2.00e-92 330.00
IUUC-Mpo-057373 Magnaporthe poae 54.67 3.00e-79 285.00
IUUC-Mtr-058412 Medicago truncatula 49.14 4.00e-73 265.00
IUUC-Mla-058966 Melampsora laricipopulina 50.76 3.00e-91 325.00
IUUC-Mga-060066 Meleagris gallopavo 52.40 8.00e-79 284.00
IUUC-Mvi-060290 Microbotryum violaceum 51.09 8.00e-89 320.00
IUUC-Mmr-060717 Microcebus murinus 51.83 5.00e-83 298.00
IUUC-Mdo-062496 Monodelphis domestica 51.30 4.00e-82 296.00
IUUC-Mmu-063490 Mus musculus 50.99 1.00e-82 297.00
IUUC-Mac-064519 Musa acuminata 48.29 2.00e-73 266.00
IUUC-Mpu-066601 Mustela putorius furo 51.30 2.00e-82 296.00
IUUC-Mlu-067501 Myotis lucifugus 51.16 9.00e-82 295.00
IUUC-Nfi-068360 Neosartorya fischeri 56.59 1.00e-76 276.00
IUUC-Ncr-068928 Neurospora crassa 60.34 2.00e-95 339.00
IUUC-Nle-069028 Nomascus leucogenys 50.32 2.00e-81 293.00
IUUC-Opr-070446 Ochotona princeps 52.05 3.00e-80 289.00
IUUC-Ont-071587 Oreochromis niloticus 50.50 1.00e-81 293.00
IUUC-Oan-073211 Ornithorhynchus anatinus 50.32 7.00e-81 291.00
IUUC-Ocu-074306 Oryctolagus cuniculus 50.00 7.00e-81 291.00
IUUC-Oba-075069 Oryza barthii 47.12 6.00e-74 268.00
IUUC-Obr-076667 Oryza brachyantha 47.46 4.00e-75 272.00
IUUC-Ogl-077208 Oryza glaberrima 47.12 6.00e-74 268.00
IUUC-Ogu-078513 Oryza glumaepatula 47.12 6.00e-74 268.00
IUUC-Oin-079094 Oryza indica 47.12 6.00e-74 268.00
IUUC-Olo-080473 Oryza longistaminata 47.12 6.00e-74 268.00
IUUC-Ome-081643 Oryza meridionalis 47.12 6.00e-74 268.00
IUUC-Oni-082589 Oryza nivara 47.12 6.00e-74 268.00
IUUC-Opu-083677 Oryza punctata 47.12 7.00e-74 268.00
IUUC-Oru-084537 Oryza rufipogon 47.12 6.00e-74 268.00
IUUC-Osa-085449 Oryza sativa 47.12 6.00e-74 268.00
IUUC-Ola-087226 Oryzias latipes 50.50 3.00e-80 289.00
IUUC-Olu-087893 Ostreococcus lucimarinus 45.33 2.00e-66 243.00
IUUC-Oga-088837 Otolemur garnettii 51.30 7.00e-83 298.00
IUUC-Oar-089594 Ovis aries 51.30 3.00e-82 296.00
IUUC-Ptr-091132 Pan troglodytes 50.65 9.00e-82 294.00
IUUC-Psi-093568 Pelodiscus sinensis 51.70 7.00e-79 285.00
IUUC-Pma-094172 Petromyzon marinus 48.00 1.00e-31 126.00
IUUC-Pno-094955 Phaeosphaeria nodorum 57.82 1.00e-91 327.00
IUUC-Ppa-095183 Physcomitrella patens 47.60 8.00e-74 268.00
IUUC-Pfo-096063 Poecilia formosa 50.83 2.00e-80 290.00
IUUC-Pab-098674 Pongo abelii 50.50 8.00e-81 291.00
IUUC-Pop-099402 Populus trichocarpa 49.32 3.00e-73 266.00
IUUC-Pca-100824 Procavia capensis 39.33 1.00e-56 211.00
IUUC-Ppe-101278 Prunus persica 48.31 5.00e-72 262.00
IUUC-Pva-103161 Pteropus vampyrus 48.17 1.00e-74 271.00
IUUC-Pgr-103573 Puccinia graminis 53.48 2.00e-93 333.00
IUUC-Ptt-103700 Puccinia triticina 53.21 7.00e-92 328.00
IUUC-Pte-104267 Pyrenophora teres 60.14 5.00e-91 325.00
IUUC-Pyt-104535 Pyrenophora triticirepentis 58.36 1.00e-88 317.00
IUUC-Rno-104833 Rattus norvegicus 50.97 3.00e-82 296.00
IUUC-Sha-106611 Sarcophilus harrisii 51.83 2.00e-82 296.00
IUUC-Sja-107654 Schizosaccharomyces japonicus 56.57 1.00e-99 354.00
IUUC-Spo-108362 Schizosaccharomyces pombe 55.18 4.00e-96 342.00
IUUC-Smo-108797 Selaginella moellendorffii 49.32 2.00e-75 273.00
IUUC-Sit-110132 Setaria italica 47.80 5.00e-75 272.00
IUUC-Sly-111852 Solanum lycopersicum 48.83 6.00e-74 268.00
IUUC-Stu-112195 Solanum tuberosum 49.16 2.00e-74 270.00
IUUC-Sbi-114229 Sorghum bicolor 48.47 2.00e-76 276.00
IUUC-Sre-114898 Sporisorium reilianum 46.82 1.00e-86 311.00
IUUC-Ssc-115995 Sus scrofa 57.25 3.00e-43 165.00
IUUC-Tgu-116793 Taeniopygia guttata 49.50 1.00e-75 274.00
IUUC-Tru-117797 Takifugu rubripes 49.83 8.00e-80 288.00
IUUC-Tni-120366 Tetraodon nigroviridis 50.17 3.00e-81 292.00
IUUC-Tca-121068 Theobroma cacao 48.45 3.00e-73 266.00
IUUC-Tre-121899 Trichoderma reesei 58.19 6.00e-94 335.00
IUUC-Tvi-122380 Trichoderma virens 58.72 1.00e-94 337.00
IUUC-Tae-123998 Triticum aestivum 47.80 3.00e-75 273.00
IUUC-Tur-126202 Triticum urartu 47.46 1.00e-74 271.00
IUUC-Tme-127181 Tuber melanosporum 57.01 3.00e-101 359.00
IUUC-Ttr-128448 Tursiops truncatus 50.99 1.00e-65 241.00
IUUC-Uma-129661 Ustilago maydis 47.66 9.00e-88 314.00
IUUC-Vda-129666 Verticillium dahliae 60.07 3.00e-96 342.00
IUUC-Vpa-130318 Vicugna pacos 51.30 2.00e-82 296.00
IUUC-Vvi-130868 Vitis vinifera 50.00 2.00e-75 273.00
IUUC-Xtr-131859 Xenopus tropicalis 49.50 7.00e-79 285.00
IUUC-Xma-133898 Xiphophorus maculatus 50.83 1.00e-80 291.00
IUUC-Yli-134559 Yarrowia lipolytica 67.33 1.00e-116 410.00
Created Date 25-Jun-2017

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