• HOME
  • BROWSE
  • SEARCH
  • LINK
  • DOWNLOAD
  • USER GUIDE
  • Protein
  • Gene
  • Annotation
  • Classification
  • Domain Profile
  • Function
  • Protein Sequence
  • Nucleotide Sequence
  • Keyword
  • GO
  • Orthology
  • TOP
  • SNP
    • dbSNP
  • mRNA Expression
    • GEO
    • ArrayExpress
  • DNA & RNA Element
    • microRNA
    • RAID2
  • PTM
    • PHOSIDA
  • Proteomics

Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Dme-031767
Ensembl Protein ID FBpp0309612
UniProt Accession X2JBC1; X2JBC1_DROME
Genbank Protein ID AHN59615.1
Protein Name Upf1, isoform B
Genbank Nucleotide ID AE014298
Gene Name Upf1; CG1559; Dmel_CG1559
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
FBgn0030354 FBtr0342744 FBpp0309612
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNARAID2
Post-translational Modifications (PTMs)
PHOSIDA
Protein Expression/Proteomics
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/Other 54.97 0.00e+00 931.00 IUUC-Sce-106206
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Drosophila melanogaster
Protein Sequence
(Fasta)
MSVDTYAPSS ALSFLDMDDN ELLPGADTQP TQYDYRDFTM PSTSQSQTQN DQLEIAQRCS 60
AGDSHPRLAS ITNDLADLQF EEEDDEPGSS YVKELPPHAC KYCGIHDPAT VVMCNNCRKW 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Dme-031767|E3,E3 activity/Other|Drosophila melanogaster
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GATAGACCCC TCGTGAGTCA AATGCAAACT GACGTATATT TATTACTGGC AAAACAGGCC 60
GGGCAAATTT GTTGAACAAG CAAGAAAGTT TTCGCTTTTT TTAATCCTAC ATTCCCCGCA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Dme-031767|E3,E3 activity/Other|Drosophila melanogaster
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
Interpro

IPR006935--Helicase/UvrB_N
IPR027417--P-loop_NTPase
IPR018999--RNA-helicase_UPF1_UPF2-interct
Pfam

PF04851--ResIII
PF09416--UPF1_Zn_bind
Gene Ontology

GO:0005737--C:cytoplasm
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0004386--F:helicase activity
GO:0008270--F:zinc ion binding
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
KEGG dme:Dmel_CG1559
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000680 Aegilops tauschii 62.24 0.00e+00 1042.00
IUUC-Aml-002008 Ailuropoda melanoleuca 70.02 0.00e+00 1385.00
IUUC-Atr-002632 Amborella trichopoda 61.96 0.00e+00 1132.00
IUUC-Apl-003997 Anas platyrhynchos 74.04 0.00e+00 1351.00
IUUC-Aca-004322 Anolis carolinensis 31.09 9.00e-49 187.00
IUUC-Aly-006521 Arabidopsis lyrata 64.73 0.00e+00 1124.00
IUUC-Ath-007059 Arabidopsis thaliana 64.73 0.00e+00 1128.00
IUUC-Ago-007801 Ashbya gossypii 53.61 0.00e+00 900.00
IUUC-Acl-008312 Aspergillus clavatus 64.66 0.00e+00 1100.00
IUUC-Afl-008429 Aspergillus flavus 64.41 0.00e+00 1099.00
IUUC-Afu-009092 Aspergillus fumigatus 64.53 0.00e+00 1098.00
IUUC-Ani-009317 Aspergillus nidulans 64.53 0.00e+00 1102.00
IUUC-Ang-009783 Aspergillus niger 63.80 0.00e+00 1099.00
IUUC-Aor-010178 Aspergillus oryzae 64.41 0.00e+00 1099.00
IUUC-Ate-010294 Aspergillus terreus 64.29 0.00e+00 1100.00
IUUC-Ame-010774 Astyanax mexicanus 56.65 0.00e+00 757.00
IUUC-Bgr-012293 Blumeria graminis 60.22 0.00e+00 1068.00
IUUC-Bta-012382 Bos taurus 70.08 0.00e+00 1385.00
IUUC-Bci-013937 Botrytis cinerea 61.78 0.00e+00 1071.00
IUUC-Bdi-014612 Brachypodium distachyon 66.17 0.00e+00 1128.00
IUUC-Bol-015145 Brassica oleracea 65.23 0.00e+00 1121.00
IUUC-Bra-017370 Brassica rapa 63.91 0.00e+00 1091.00
IUUC-Cel-018240 Caenorhabditis elegans 52.82 0.00e+00 956.00
IUUC-Cja-019892 Callithrix jacchus 74.32 0.00e+00 1361.00
IUUC-Cfa-020700 Canis familiaris 69.87 0.00e+00 1384.00
IUUC-Cpo-021510 Cavia porcellus 70.01 0.00e+00 1386.00
IUUC-Cre-022731 Chlamydomonas reinhardtii 54.91 0.00e+00 893.00
IUUC-Csa-023665 Chlorocebus sabaeus 70.73 0.00e+00 1395.00
IUUC-Cin-025798 Ciona intestinalis 70.34 0.00e+00 1199.00
IUUC-Csv-025901 Ciona savignyi 67.23 0.00e+00 1274.00
IUUC-Cgl-026653 Colletotrichum gloeosporioides 61.41 0.00e+00 1066.00
IUUC-Cne-027014 Cryptococcus neoformans 59.93 0.00e+00 1058.00
IUUC-Dre-028705 Danio rerio 72.36 0.00e+00 1384.00
IUUC-Dor-030369 Dipodomys ordii 71.99 0.00e+00 1299.00
IUUC-Ete-032800 Echinops telfairi 33.10 7.00e-51 195.00
IUUC-Eca-033840 Equus caballus 74.32 0.00e+00 1362.00
IUUC-Fca-035466 Felis catus 73.95 0.00e+00 1350.00
IUUC-Fal-037548 Ficedula albicollis 74.63 0.00e+00 1351.00
IUUC-Fox-038023 Fusarium oxysporum 60.00 0.00e+00 1053.00
IUUC-Gmo-039285 Gadus morhua 69.95 0.00e+00 1363.00
IUUC-Ggr-039810 Gaeumannomyces graminis 61.58 0.00e+00 1077.00
IUUC-Gga-040972 Gallus gallus 70.60 0.00e+00 1388.00
IUUC-Gac-042075 Gasterosteus aculeatus 69.78 0.00e+00 1356.00
IUUC-Gma-042713 Glycine max 64.72 0.00e+00 1155.00
IUUC-Ggo-045398 Gorilla gorilla 74.32 0.00e+00 1362.00
IUUC-Hsa-046152 Homo sapiens 70.73 0.00e+00 1395.00
IUUC-Hvu-047555 Hordeum vulgare 62.55 1.00e-179 621.00
IUUC-Itr-048247 Ictidomys tridecemlineatus 75.35 0.00e+00 1337.00
IUUC-Kpa-049205 Komagataella pastoris 48.31 0.00e+00 732.00
IUUC-Lch-049587 Latimeria chalumnae 76.81 0.00e+00 853.00
IUUC-Lpe-051059 Leersia perrieri 65.98 0.00e+00 1131.00
IUUC-Loc-051911 Lepisosteus oculatus 72.26 0.00e+00 1390.00
IUUC-Lma-053007 Leptosphaeria maculans 62.89 0.00e+00 1069.00
IUUC-Laf-054234 Loxodonta africana 70.01 0.00e+00 1387.00
IUUC-Mcc-054762 Macaca mulatta 70.30 0.00e+00 1387.00
IUUC-Meu-056677 Macropus eugenii 75.00 3.00e-154 538.00
IUUC-Mor-057147 Magnaporthe oryzae 62.87 0.00e+00 1075.00
IUUC-Mpo-057314 Magnaporthe poae 62.81 0.00e+00 1077.00
IUUC-Mtr-058329 Medicago truncatula 61.34 0.00e+00 1156.00
IUUC-Mla-059094 Melampsora laricipopulina 61.07 8.00e-177 612.00
IUUC-Mga-060126 Meleagris gallopavo 73.61 0.00e+00 1337.00
IUUC-Mvi-060373 Microbotryum violaceum 66.34 0.00e+00 1162.00
IUUC-Mmr-060628 Microcebus murinus 70.30 0.00e+00 1387.00
IUUC-Mdo-061858 Monodelphis domestica 74.32 0.00e+00 1361.00
IUUC-Mmu-064116 Mus musculus 70.79 0.00e+00 1392.00
IUUC-Mac-065136 Musa acuminata 64.87 0.00e+00 1122.00
IUUC-Mpu-066463 Mustela putorius furo 70.66 0.00e+00 1394.00
IUUC-Mlu-068098 Myotis lucifugus 70.72 0.00e+00 1387.00
IUUC-Nfi-068370 Neosartorya fischeri 64.53 0.00e+00 1098.00
IUUC-Ncr-068792 Neurospora crassa 61.95 0.00e+00 1074.00
IUUC-Nle-070102 Nomascus leucogenys 74.32 0.00e+00 1357.00
IUUC-Opr-070620 Ochotona princeps 70.84 0.00e+00 1252.00
IUUC-Ont-072685 Oreochromis niloticus 71.94 0.00e+00 1375.00
IUUC-Oan-073665 Ornithorhynchus anatinus 70.23 0.00e+00 1394.00
IUUC-Ocu-074154 Oryctolagus cuniculus 33.33 7.00e-53 201.00
IUUC-Oba-075075 Oryza barthii 59.95 0.00e+00 909.00
IUUC-Obr-076183 Oryza brachyantha 62.93 0.00e+00 959.00
IUUC-Ogl-077691 Oryza glaberrima 63.83 0.00e+00 1130.00
IUUC-Ogu-078423 Oryza glumaepatula 63.83 0.00e+00 1130.00
IUUC-Oin-080107 Oryza indica 63.83 0.00e+00 1130.00
IUUC-Olo-080269 Oryza longistaminata 63.20 0.00e+00 1058.00
IUUC-Ome-081779 Oryza meridionalis 63.83 0.00e+00 1129.00
IUUC-Oni-082366 Oryza nivara 63.83 0.00e+00 1130.00
IUUC-Opu-083958 Oryza punctata 63.83 0.00e+00 1130.00
IUUC-Oru-084182 Oryza rufipogon 63.83 0.00e+00 1129.00
IUUC-Osa-085285 Oryza sativa 63.83 0.00e+00 1128.00
IUUC-Ola-086954 Oryzias latipes 68.80 0.00e+00 1334.00
IUUC-Olu-087685 Ostreococcus lucimarinus 53.67 0.00e+00 865.00
IUUC-Oga-088591 Otolemur garnettii 70.73 0.00e+00 1394.00
IUUC-Oar-089417 Ovis aries 69.85 0.00e+00 1358.00
IUUC-Ptr-091510 Pan troglodytes 70.31 0.00e+00 1373.00
IUUC-Pan-091886 Papio anubis 70.73 0.00e+00 1395.00
IUUC-Psi-093755 Pelodiscus sinensis 74.01 0.00e+00 924.00
IUUC-Pma-094470 Petromyzon marinus 72.52 0.00e+00 1402.00
IUUC-Pno-094963 Phaeosphaeria nodorum 62.52 0.00e+00 1065.00
IUUC-Ppa-095479 Physcomitrella patens 66.04 0.00e+00 1177.00
IUUC-Pfo-097456 Poecilia formosa 71.19 0.00e+00 1373.00
IUUC-Pab-098075 Pongo abelii 66.60 0.00e+00 1274.00
IUUC-Pop-099557 Populus trichocarpa 64.44 0.00e+00 1140.00
IUUC-Pca-100717 Procavia capensis 83.73 4.00e-147 514.00
IUUC-Ppe-101675 Prunus persica 64.56 0.00e+00 1149.00
IUUC-Pva-103029 Pteropus vampyrus 68.52 0.00e+00 1013.00
IUUC-Pgr-103318 Puccinia graminis 62.90 0.00e+00 1090.00
IUUC-Ptt-103956 Puccinia triticina 63.19 0.00e+00 1090.00
IUUC-Pte-104399 Pyrenophora teres 62.89 0.00e+00 1068.00
IUUC-Pyt-104749 Pyrenophora triticirepentis 62.76 0.00e+00 1065.00
IUUC-Rno-105784 Rattus norvegicus 70.79 0.00e+00 1392.00
IUUC-Sce-106206 Saccharomyces cerevisiae 54.97 0.00e+00 898.00
IUUC-Sha-106566 Sarcophilus harrisii 73.24 0.00e+00 1347.00
IUUC-Sja-107721 Schizosaccharomyces japonicus 57.40 0.00e+00 1014.00
IUUC-Spo-108258 Schizosaccharomyces pombe 57.45 0.00e+00 993.00
IUUC-Ssl-108640 Sclerotinia sclerotiorum 57.56 0.00e+00 948.00
IUUC-Smo-109676 Selaginella moellendorffii 28.57 1.00e-02 35.00
IUUC-Sit-109760 Setaria italica 63.96 0.00e+00 1133.00
IUUC-Sly-111807 Solanum lycopersicum 64.88 0.00e+00 1155.00
IUUC-Stu-112869 Solanum tuberosum 65.03 0.00e+00 1144.00
IUUC-Sar-112950 Sorex araneus 36.24 8.00e-39 154.00
IUUC-Sbi-114863 Sorghum bicolor 64.08 0.00e+00 1136.00
IUUC-Sre-115092 Sporisorium reilianum 63.44 0.00e+00 1135.00
IUUC-Tgu-117214 Taeniopygia guttata 65.05 0.00e+00 1204.00
IUUC-Tru-118386 Takifugu rubripes 71.76 0.00e+00 1375.00
IUUC-Tsy-119550 Tarsius syrichta 71.78 5.00e-117 414.00
IUUC-Tni-120212 Tetraodon nigroviridis 69.53 0.00e+00 1322.00
IUUC-Tca-121353 Theobroma cacao 66.30 0.00e+00 1145.00
IUUC-Tre-122245 Trichoderma reesei 35.86 2.00e-53 204.00
IUUC-Tvi-122452 Trichoderma virens 61.12 0.00e+00 1037.00
IUUC-Tae-123692 Triticum aestivum 64.08 0.00e+00 1127.00
IUUC-Tur-126770 Triticum urartu 54.76 0.00e+00 935.00
IUUC-Tme-126956 Tuber melanosporum 63.43 0.00e+00 1100.00
IUUC-Tbe-127873 Tupaia belangeri 32.47 4.00e-44 172.00
IUUC-Ttr-128212 Tursiops truncatus 67.15 0.00e+00 1282.00
IUUC-Uma-129327 Ustilago maydis 64.21 0.00e+00 1139.00
IUUC-Vda-129858 Verticillium dahliae 62.20 0.00e+00 1058.00
IUUC-Vpa-130743 Vicugna pacos 34.67 3.00e-47 182.00
IUUC-Vvi-131222 Vitis vinifera 64.87 0.00e+00 1130.00
IUUC-Xtr-131800 Xenopus tropicalis 58.60 0.00e+00 1056.00
IUUC-Xma-133216 Xiphophorus maculatus 71.08 0.00e+00 1372.00
IUUC-Yli-134482 Yarrowia lipolytica 49.52 0.00e+00 808.00
IUUC-Zma-134802 Zea mays 65.98 0.00e+00 1136.00
Created Date 25-Jun-2017

https://dev.news.makassarkota.go.id/public/pgsoft-demo/ https://jdih.sumbawabaratkab.go.id/lato/pg-soft-demo/ https://dev.news.makassarkota.go.id/public/slot-gacor/ http://pbb.tanahbumbukab.go.id/-/slot-gacor/ slot gacor https://siakad.unipra.ac.id/sass/slot-gacor-x500/ http://kpm.dinus.ac.id/assets/images/berita/slot/
Copyright © 2004-2017.The CUCKOO Workgroup. All Rights Reserved