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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Sce-106206
UUCD1 version UUC-SaC-00012
Ensembl Protein ID YMR080C
UniProt Accession P30771; D6VZQ4; NAM7_YEAST
Genbank Protein ID CAA44266.1; AAA35197.1; CAA89226.1; DAA09978.1
Protein Name ATP-dependent helicase NAM7; Nonsense-mediated mRNA decay protein 1; Nuclear accommodation of mitochondria 7 protein; Up-frameshift suppressor 1
Genbank Nucleotide ID X62394; M76659; Z49259; BK006946
Gene Name NAM7; IFS2; MOF4; UPF1; YMR080C; YM9582.05C
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
YMR080C YMR080C YMR080C
Annotation
mRNA Expression
GEOFFGED
Protein-protein Interaction
IIDiRefIndexHINTMentha
Protein 3D Structure
PDBMMDB
Post-translational Modifications (PTMs)
CPLMdbPAFdbPTMUniProt
BioGRID
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
E3 activity/Other E3 activity/Other 18676617
Organism Saccharomyces cerevisiae
Functional Description
(View)

Functional Description


     Present with 6090 molecules/cell in log phase SD medium.
 Present with 6090 molecules/cell in log phase SD medium.
Protein Sequence
(Fasta)
MVGSGSHTPY DISNSPSDVN VQPATQLNST LVEDDDVDNQ LFEEAQVTET GFRSPSASDN 60
SCAYCGIDSA KCVIKCNSCK KWFCNTKNGT SSSHIVNHLV LSHHNVVSLH PDSDLGDTVL 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Sce-106206|E3,E3 activity/Other|Saccharomyces cerevisiae
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGGTCGGTT CCGGTTCTCA CACTCCTTAT GATATATCAA ACTCTCCATC TGATGTAAAT 60
GTCCAACCCG CAACACAACT AAATTCCACC TTGGTGGAGG ATGACGATGT AGATAATCAG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Sce-106206|E3,E3 activity/Other|Saccharomyces cerevisiae
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0067--ATP-binding
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0347--Helicase
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0866--Nonsense-mediated mRNA decay
KW-0547--Nucleotide-binding
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR003593--AAA+_ATPase
IPR027417--P-loop_NTPase
IPR018999--RNA-helicase_UPF1_UPF2-interct
Pfam

PF09416--UPF1_Zn_bind
SMART

SM00382--AAA
Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0000932--C:P-body
GO:0005886--C:plasma membrane
GO:0005844--C:polysome
GO:0005524--F:ATP binding
GO:0004004--F:ATP-dependent RNA helicase activity
GO:0016887--F:ATPase activity
GO:0003677--F:DNA binding
GO:0003729--F:mRNA binding
GO:0043024--F:ribosomal small subunit binding
GO:0008270--F:zinc ion binding
GO:0030466--P:chromatin silencing at silent mating-type cassette
GO:0042742--P:defense response to bacterium
GO:0006310--P:DNA recombination
GO:0008298--P:intracellular mRNA localization
GO:0009867--P:jasmonic acid mediated signaling pathway
GO:0048571--P:long-day photoperiodism
GO:0000956--P:nuclear-transcribed mRNA catabolic process
GO:0070478--P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0016567--P:protein ubiquitination
GO:0006449--P:regulation of translational termination
GO:0009611--P:response to wounding
GO:0009863--P:salicylic acid mediated signaling pathway
GO:0010182--P:sugar mediated signaling pathway
KEGG sce:YMR080C
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000680 Aegilops tauschii 56.39 0.00e+00 870.00
IUUC-Aml-002008 Ailuropoda melanoleuca 57.11 0.00e+00 964.00
IUUC-Atr-002632 Amborella trichopoda 56.70 0.00e+00 938.00
IUUC-Apl-003997 Anas platyrhynchos 57.11 0.00e+00 963.00
IUUC-Aca-004322 Anolis carolinensis 32.55 7.00e-52 197.00
IUUC-Aly-006521 Arabidopsis lyrata 57.27 0.00e+00 939.00
IUUC-Ath-007059 Arabidopsis thaliana 57.27 0.00e+00 937.00
IUUC-Ago-007801 Ashbya gossypii 77.80 0.00e+00 1458.00
IUUC-Acl-008312 Aspergillus clavatus 59.39 0.00e+00 1022.00
IUUC-Afl-008429 Aspergillus flavus 58.02 0.00e+00 1018.00
IUUC-Afu-009092 Aspergillus fumigatus 59.39 0.00e+00 1021.00
IUUC-Ani-009317 Aspergillus nidulans 59.42 0.00e+00 1019.00
IUUC-Ang-009783 Aspergillus niger 58.25 0.00e+00 1023.00
IUUC-Aor-010178 Aspergillus oryzae 58.02 0.00e+00 1018.00
IUUC-Ate-010294 Aspergillus terreus 59.39 0.00e+00 1024.00
IUUC-Ame-010774 Astyanax mexicanus 62.98 7.00e-100 356.00
IUUC-Bgr-012293 Blumeria graminis 60.35 0.00e+00 1029.00
IUUC-Bta-012382 Bos taurus 57.11 0.00e+00 964.00
IUUC-Bci-013937 Botrytis cinerea 58.64 0.00e+00 1021.00
IUUC-Bdi-014612 Brachypodium distachyon 58.01 0.00e+00 945.00
IUUC-Bol-015145 Brassica oleracea 56.90 0.00e+00 932.00
IUUC-Bra-017370 Brassica rapa 56.03 0.00e+00 904.00
IUUC-Cel-018240 Caenorhabditis elegans 49.62 0.00e+00 801.00
IUUC-Cja-019892 Callithrix jacchus 55.98 0.00e+00 968.00
IUUC-Cfa-020700 Canis familiaris 57.11 0.00e+00 964.00
IUUC-Cpo-021510 Cavia porcellus 55.44 0.00e+00 967.00
IUUC-Cre-022731 Chlamydomonas reinhardtii 54.06 0.00e+00 816.00
IUUC-Csa-023665 Chlorocebus sabaeus 55.98 0.00e+00 969.00
IUUC-Cin-025798 Ciona intestinalis 57.22 0.00e+00 892.00
IUUC-Csv-025901 Ciona savignyi 56.48 0.00e+00 895.00
IUUC-Cgl-026653 Colletotrichum gloeosporioides 55.59 0.00e+00 1014.00
IUUC-Cne-027014 Cryptococcus neoformans 55.86 0.00e+00 994.00
IUUC-Dre-028705 Danio rerio 57.70 0.00e+00 970.00
IUUC-Dor-030369 Dipodomys ordii 55.82 0.00e+00 922.00
IUUC-Dme-031767 Drosophila melanogaster 54.97 0.00e+00 931.00
IUUC-Ete-032800 Echinops telfairi 32.88 3.00e-50 191.00
IUUC-Eca-033840 Equus caballus 57.82 0.00e+00 967.00
IUUC-Fca-035466 Felis catus 57.04 0.00e+00 962.00
IUUC-Fal-037548 Ficedula albicollis 57.52 0.00e+00 962.00
IUUC-Fox-038023 Fusarium oxysporum 57.72 0.00e+00 1011.00
IUUC-Gmo-039285 Gadus morhua 56.67 0.00e+00 958.00
IUUC-Ggr-039810 Gaeumannomyces graminis 57.65 0.00e+00 1023.00
IUUC-Gga-040972 Gallus gallus 57.82 0.00e+00 968.00
IUUC-Gac-042075 Gasterosteus aculeatus 56.97 0.00e+00 963.00
IUUC-Gma-042713 Glycine max 57.14 0.00e+00 957.00
IUUC-Ggo-045398 Gorilla gorilla 57.82 0.00e+00 967.00
IUUC-Hsa-046152 Homo sapiens 55.98 0.00e+00 969.00
IUUC-Hvu-047555 Hordeum vulgare 54.45 1.00e-144 504.00
IUUC-Itr-048247 Ictidomys tridecemlineatus 57.27 0.00e+00 958.00
IUUC-Kpa-049205 Komagataella pastoris 56.59 0.00e+00 958.00
IUUC-Lch-049587 Latimeria chalumnae 62.02 0.00e+00 637.00
IUUC-Lpe-051059 Leersia perrieri 57.58 0.00e+00 941.00
IUUC-Loc-051911 Lepisosteus oculatus 57.70 0.00e+00 964.00
IUUC-Lma-053007 Leptosphaeria maculans 60.10 0.00e+00 1030.00
IUUC-Laf-054234 Loxodonta africana 57.11 0.00e+00 965.00
IUUC-Mcc-054762 Macaca mulatta 55.32 0.00e+00 965.00
IUUC-Meu-056677 Macropus eugenii 62.01 5.00e-111 393.00
IUUC-Mor-057147 Magnaporthe oryzae 57.54 0.00e+00 1025.00
IUUC-Mpo-057314 Magnaporthe poae 57.53 0.00e+00 1022.00
IUUC-Mtr-058329 Medicago truncatula 56.35 0.00e+00 958.00
IUUC-Mla-059094 Melampsora laricipopulina 50.73 4.00e-144 502.00
IUUC-Mga-060126 Meleagris gallopavo 56.67 0.00e+00 949.00
IUUC-Mvi-060373 Microbotryum violaceum 58.67 0.00e+00 996.00
IUUC-Mmr-060628 Microcebus murinus 55.32 0.00e+00 965.00
IUUC-Mdo-061858 Monodelphis domestica 57.82 0.00e+00 967.00
IUUC-Mmu-064116 Mus musculus 55.98 0.00e+00 970.00
IUUC-Mac-065136 Musa acuminata 57.18 0.00e+00 945.00
IUUC-Mpu-066463 Mustela putorius furo 57.82 0.00e+00 969.00
IUUC-Mlu-068098 Myotis lucifugus 57.82 0.00e+00 968.00
IUUC-Nfi-068370 Neosartorya fischeri 59.39 0.00e+00 1021.00
IUUC-Ncr-068792 Neurospora crassa 57.85 0.00e+00 1019.00
IUUC-Nle-070102 Nomascus leucogenys 57.89 0.00e+00 967.00
IUUC-Opr-070620 Ochotona princeps 55.44 0.00e+00 899.00
IUUC-Ont-072685 Oreochromis niloticus 57.95 0.00e+00 974.00
IUUC-Oan-073665 Ornithorhynchus anatinus 56.21 0.00e+00 961.00
IUUC-Ocu-074154 Oryctolagus cuniculus 33.33 2.00e-52 199.00
IUUC-Oba-075075 Oryza barthii 55.43 0.00e+00 756.00
IUUC-Obr-076183 Oryza brachyantha 57.71 0.00e+00 806.00
IUUC-Ogl-077691 Oryza glaberrima 58.01 0.00e+00 941.00
IUUC-Ogu-078423 Oryza glumaepatula 58.01 0.00e+00 941.00
IUUC-Oin-080107 Oryza indica 58.01 0.00e+00 941.00
IUUC-Olo-080269 Oryza longistaminata 57.59 0.00e+00 882.00
IUUC-Ome-081779 Oryza meridionalis 58.01 0.00e+00 941.00
IUUC-Oni-082366 Oryza nivara 58.01 0.00e+00 941.00
IUUC-Opu-083958 Oryza punctata 57.71 0.00e+00 942.00
IUUC-Oru-084182 Oryza rufipogon 58.01 0.00e+00 941.00
IUUC-Osa-085285 Oryza sativa 57.71 0.00e+00 941.00
IUUC-Ola-086954 Oryzias latipes 54.81 0.00e+00 924.00
IUUC-Olu-087685 Ostreococcus lucimarinus 51.12 0.00e+00 825.00
IUUC-Oga-088591 Otolemur garnettii 55.98 0.00e+00 969.00
IUUC-Oar-089417 Ovis aries 56.98 0.00e+00 962.00
IUUC-Ptr-091510 Pan troglodytes 55.15 0.00e+00 947.00
IUUC-Pan-091886 Papio anubis 55.98 0.00e+00 969.00
IUUC-Psi-093755 Pelodiscus sinensis 57.70 0.00e+00 673.00
IUUC-Pma-094470 Petromyzon marinus 56.95 0.00e+00 967.00
IUUC-Pno-094963 Phaeosphaeria nodorum 60.10 0.00e+00 1028.00
IUUC-Ppa-095479 Physcomitrella patens 56.47 0.00e+00 938.00
IUUC-Pfo-097456 Poecilia formosa 57.82 0.00e+00 969.00
IUUC-Pab-098075 Pongo abelii 52.87 0.00e+00 882.00
IUUC-Pop-099557 Populus trichocarpa 56.90 0.00e+00 956.00
IUUC-Pca-100717 Procavia capensis 66.10 9.00e-116 409.00
IUUC-Ppe-101675 Prunus persica 55.84 0.00e+00 965.00
IUUC-Pva-103029 Pteropus vampyrus 57.57 0.00e+00 724.00
IUUC-Pgr-103318 Puccinia graminis 56.56 0.00e+00 959.00
IUUC-Ptt-103956 Puccinia triticina 56.43 0.00e+00 961.00
IUUC-Pte-104399 Pyrenophora teres 60.22 0.00e+00 1029.00
IUUC-Pyt-104749 Pyrenophora triticirepentis 59.98 0.00e+00 1028.00
IUUC-Rno-105784 Rattus norvegicus 55.98 0.00e+00 971.00
IUUC-Sha-106566 Sarcophilus harrisii 57.09 0.00e+00 960.00
IUUC-Sja-107721 Schizosaccharomyces japonicus 57.04 0.00e+00 965.00
IUUC-Spo-108258 Schizosaccharomyces pombe 55.92 0.00e+00 948.00
IUUC-Ssl-108640 Sclerotinia sclerotiorum 56.71 0.00e+00 887.00
IUUC-Smo-109676 Selaginella moellendorffii 27.71 2.30e-02 32.30
IUUC-Sit-109760 Setaria italica 57.95 0.00e+00 947.00
IUUC-Sly-111807 Solanum lycopersicum 57.58 0.00e+00 964.00
IUUC-Stu-112869 Solanum tuberosum 56.70 0.00e+00 949.00
IUUC-Sar-112950 Sorex araneus 33.10 4.00e-40 157.00
IUUC-Sbi-114863 Sorghum bicolor 58.14 0.00e+00 944.00
IUUC-Sre-115092 Sporisorium reilianum 58.36 0.00e+00 1003.00
IUUC-Ssc-116401 Sus scrofa 43.59 3.70e-02 30.40
IUUC-Tgu-117214 Taeniopygia guttata 52.33 0.00e+00 845.00
IUUC-Tru-118386 Takifugu rubripes 56.16 0.00e+00 942.00
IUUC-Tsy-119550 Tarsius syrichta 50.88 2.00e-78 285.00
IUUC-Tni-120212 Tetraodon nigroviridis 56.91 0.00e+00 935.00
IUUC-Tca-121353 Theobroma cacao 57.51 0.00e+00 964.00
IUUC-Tre-122245 Trichoderma reesei 33.99 3.00e-54 206.00
IUUC-Tvi-122452 Trichoderma virens 56.13 0.00e+00 994.00
IUUC-Tae-123692 Triticum aestivum 57.89 0.00e+00 943.00
IUUC-Tur-126770 Triticum urartu 53.58 1.00e-163 568.00
IUUC-Tme-126956 Tuber melanosporum 60.85 0.00e+00 1032.00
IUUC-Tbe-127873 Tupaia belangeri 32.83 5.00e-44 171.00
IUUC-Ttr-128212 Tursiops truncatus 53.82 0.00e+00 865.00
IUUC-Uma-129327 Ustilago maydis 58.12 0.00e+00 1003.00
IUUC-Vda-129858 Verticillium dahliae 57.67 0.00e+00 993.00
IUUC-Vpa-130743 Vicugna pacos 33.02 5.00e-49 187.00
IUUC-Vvi-131222 Vitis vinifera 56.27 0.00e+00 940.00
IUUC-Xtr-131800 Xenopus tropicalis 55.61 0.00e+00 750.00
IUUC-Xma-133216 Xiphophorus maculatus 57.82 0.00e+00 969.00
IUUC-Yli-134482 Yarrowia lipolytica 54.84 0.00e+00 914.00
IUUC-Zma-134802 Zea mays 57.83 0.00e+00 947.00
Created Date 25-Jun-2017

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