iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           H++ v+ ++f  d ++l+sGsdD ++ +WD+ t 
   Q: 54   HKGCVNTVSFnADgDILLSGSDDRQVILWDWQTA 87
           99*********666****************9876 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSGRPAKRPR TDHSVVNVWE RELGLLPNRS FSNRFSASED LLRRLGLDKK LDKHKGCVNT 60
VSFNADGDIL LSGSDDRQVI LWDWQTASVK LSFDSGHFNN IFQAKFMPFS DDRTIVTSAA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTTGGTTCT CTGTTTCTGT TCTTCTTCTC TAATAAGTTT TTCTCTAGTC GTTCAATATT 60
ACTTAACGAT AAATCAGACT TTTTAAACTC GATCTGGTGG GGACGATGAG TGGAAGGCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005872	Arabidopsis lyrata	95.10	0.00e+00	759.00
IUUC-Bol-015450	Brassica oleracea	77.96	0.00e+00	676.00
IUUC-Bra-017498	Brassica rapa	79.90	0.00e+00	685.00
IUUC-Cho-024527	Choloepus hoffmanni	27.71	2.00e-26	114.00
IUUC-Cin-025683	Ciona intestinalis	42.11	9.00e-73	266.00
IUUC-Csv-026331	Ciona savignyi	42.69	2.00e-65	241.00
IUUC-Dme-032115	Drosophila melanogaster	39.23	2.00e-65	243.00
IUUC-Itr-048849	Ictidomys tridecemlineatus	39.85	1.00e-71	263.00
IUUC-Loc-052880	Lepisosteus oculatus	31.35	1.00e-36	148.00
IUUC-Oan-072748	Ornithorhynchus anatinus	28.33	1.00e-20	93.60
IUUC-Ola-086755	Oryzias latipes	32.67	1.00e-37	151.00
IUUC-Smo-109128	Selaginella moellendorffii	52.63	2.00e-112	398.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence