iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Fal-037018

Ensembl Protein ID

ENSFALP00000005647.1

UniProt Accession

U3JS93; U3JS93_FICAL

Genbank Protein ID

ENSFALP00000005647

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AGTO01001447

Gene Name

PRPF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSFALG00000005423.1	ENSFALT00000005674.1	ENSFALP00000005647.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.20e-26	90.0	412	450
UBD/Beta-Prp	7.20e-47	159.7	237	466

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH  ++++++f ++  ++++Gs+D+t+kvWDlr+ +++ 
   Q: 412  GHLKEIYGINFsPNgYHVATGSGDNTCKVWDLRQRKCIY 450
           7999********77799****************999975 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk........ilvtgseDrtikvwdlstgkcvht 89
           ++ +++  +fsp+++llat++++g  k+w+v + +l+++l gh+  v a+ f+p++          l++++ D+ +k+w+l++ ++v  
   Q: 237  DDRPLSYCHFSPNSKLLATACWSGLCKLWSVPDCNLVHTLRGHSTNVGAIVFHPKATvsldkkdvSLASCAADGSVKLWNLESEEPVAD 325
           677888899*********************************************998899999999*********************** PP
   S: 90   lkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgg 178
           ++gh+ +v  + ++psg +l ++  d   r+wdle ++++   ++gh++ v  +++h dg+l  +G+lD + r+Wdl+tg+++  l+g 
   Q: 326  IEGHSMRVARVMWHPSGRFLGTTCYDHSWRLWDLEAQEEIL-HQEGHSKGVYDIAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEG- 412
           *****************************************.********************************************99. PP
   S: 179  htdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfsp 232
           h + +y ++f++ng ++++gs d+t k+wdl++ +c++t  +h++ v+ vrf +
   Q: 413  HLKEIYGINFSPNGYHVATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVRFER 466
           ***************************************************984 PP

Organism

Ficedula albicollis

Protein Sequence
(Fasta)

MATARAPAAR GAARPPEPPK AKAAEEGEAP PAKRAPIFYG SLEEKERERL AKGEAGLLAK 60
EGMKAALEAG NINISSGEVF DLEDHMSERQ AEVLAEFERR KRARQINVST DDSEVKACLR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCACCG CGCGGGCTCC GGCGGCGCGC GGCGCGGCGC GGCCCCCCGA GGTGAGTGGG 60
TGTCCGGGGA TGGGCCCGGC AGCAGCGGGA GAGGCCCGGA GTGGGGTTTG CGGTGCAGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR002469--Peptidase_S9B_N
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0015030--C:Cajal body
GO:0016607--C:nuclear speck
GO:0071001--C:U4/U6 snRNP

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	42.60	6.00e-83	300.00
IUUC-Aml-001737	Ailuropoda melanoleuca	89.47	0.00e+00	803.00
IUUC-Atr-002828	Amborella trichopoda	43.26	2.00e-84	306.00
IUUC-Apl-003723	Anas platyrhynchos	95.99	0.00e+00	868.00
IUUC-Aca-004972	Anolis carolinensis	89.96	0.00e+00	786.00
IUUC-Aly-006531	Arabidopsis lyrata	40.05	7.00e-77	281.00
IUUC-Ath-007367	Arabidopsis thaliana	42.12	1.00e-91	330.00
IUUC-Ago-007893	Ashbya gossypii	34.26	1.00e-47	183.00
IUUC-Acl-008236	Aspergillus clavatus	41.55	8.00e-81	294.00
IUUC-Afl-008522	Aspergillus flavus	42.22	1.00e-87	317.00
IUUC-Afu-008904	Aspergillus fumigatus	40.32	3.00e-86	312.00
IUUC-Ani-009198	Aspergillus nidulans	41.40	6.00e-87	314.00
IUUC-Ang-009662	Aspergillus niger	41.94	2.00e-84	306.00
IUUC-Aor-009881	Aspergillus oryzae	42.22	9.00e-88	317.00
IUUC-Ate-010333	Aspergillus terreus	40.84	1.00e-78	286.00
IUUC-Ame-011697	Astyanax mexicanus	77.60	0.00e+00	691.00
IUUC-Bgr-012254	Blumeria graminis	40.99	1.00e-90	327.00
IUUC-Bta-012615	Bos taurus	88.34	0.00e+00	776.00
IUUC-Bci-013720	Botrytis cinerea	40.49	4.00e-90	324.00
IUUC-Bdi-014302	Brachypodium distachyon	43.54	4.00e-90	325.00
IUUC-Bol-015594	Brassica oleracea	42.12	5.00e-81	295.00
IUUC-Bra-017465	Brassica rapa	41.87	3.00e-81	295.00
IUUC-Cel-018632	Caenorhabditis elegans	46.95	7.00e-93	333.00
IUUC-Cja-019747	Callithrix jacchus	87.75	0.00e+00	810.00
IUUC-Cfa-020288	Canis familiaris	89.47	0.00e+00	805.00
IUUC-Cpo-021440	Cavia porcellus	87.67	0.00e+00	791.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	44.26	1.00e-67	249.00
IUUC-Csa-023139	Chlorocebus sabaeus	91.79	7.00e-154	536.00
IUUC-Cho-024481	Choloepus hoffmanni	89.18	0.00e+00	697.00
IUUC-Cin-025106	Ciona intestinalis	57.08	5.00e-150	523.00
IUUC-Csv-026087	Ciona savignyi	57.51	8.00e-149	520.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	39.74	2.00e-81	296.00
IUUC-Cne-026793	Cryptococcus neoformans	45.67	7.00e-98	350.00
IUUC-Dre-028723	Danio rerio	77.83	0.00e+00	678.00
IUUC-Dno-029299	Dasypus novemcinctus	89.47	0.00e+00	805.00
IUUC-Dor-030345	Dipodomys ordii	62.45	1.00e-79	290.00
IUUC-Dse-031562	Dothistroma septosporum	39.79	3.00e-79	288.00
IUUC-Dme-031783	Drosophila melanogaster	57.79	7.00e-121	427.00
IUUC-Ete-032669	Echinops telfairi	87.64	0.00e+00	801.00
IUUC-Eca-033566	Equus caballus	89.47	0.00e+00	803.00
IUUC-Eeu-034524	Erinaceus europaeus	91.63	2.00e-139	489.00
IUUC-Fca-036215	Felis catus	89.47	0.00e+00	805.00
IUUC-Fox-037936	Fusarium oxysporum	39.85	6.00e-76	278.00
IUUC-Fso-038366	Fusarium solani	40.72	7.00e-81	294.00
IUUC-Gmo-038966	Gadus morhua	64.16	7.00e-109	386.00
IUUC-Ggr-039942	Gaeumannomyces graminis	38.93	2.00e-73	269.00
IUUC-Gga-040797	Gallus gallus	97.73	0.00e+00	867.00
IUUC-Gac-042598	Gasterosteus aculeatus	67.95	5.00e-164	570.00
IUUC-Gma-044220	Glycine max	44.44	3.00e-82	298.00
IUUC-Ggo-044682	Gorilla gorilla	89.04	0.00e+00	796.00
IUUC-Hsa-045804	Homo sapiens	87.53	0.00e+00	806.00
IUUC-Hvu-047567	Hordeum vulgare	42.89	2.00e-79	289.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	87.92	0.00e+00	810.00
IUUC-Kpa-049369	Komagataella pastoris	31.82	4.00e-47	181.00
IUUC-Lch-050074	Latimeria chalumnae	76.34	0.00e+00	688.00
IUUC-Lpe-051333	Leersia perrieri	42.19	4.00e-81	295.00
IUUC-Loc-052164	Lepisosteus oculatus	79.86	0.00e+00	716.00
IUUC-Lma-053088	Leptosphaeria maculans	37.04	1.00e-76	280.00
IUUC-Laf-053460	Loxodonta africana	88.31	0.00e+00	807.00
IUUC-Mcc-055859	Macaca mulatta	89.47	0.00e+00	805.00
IUUC-Meu-056134	Macropus eugenii	87.42	0.00e+00	801.00
IUUC-Mor-057251	Magnaporthe oryzae	39.12	3.00e-75	275.00
IUUC-Mpo-057375	Magnaporthe poae	45.78	6.00e-42	163.00
IUUC-Mtr-057656	Medicago truncatula	43.87	1.00e-85	310.00
IUUC-Mla-059145	Melampsora laricipopulina	42.26	2.00e-90	326.00
IUUC-Mga-059855	Meleagris gallopavo	96.65	0.00e+00	868.00
IUUC-Mvi-060372	Microbotryum violaceum	48.24	1.00e-82	300.00
IUUC-Mmr-060826	Microcebus murinus	89.47	0.00e+00	802.00
IUUC-Mdo-062748	Monodelphis domestica	88.21	0.00e+00	801.00
IUUC-Mmu-063351	Mus musculus	89.24	0.00e+00	801.00
IUUC-Mac-064846	Musa acuminata	43.67	2.00e-77	282.00
IUUC-Mpu-066006	Mustela putorius furo	89.47	0.00e+00	805.00
IUUC-Mlu-067398	Myotis lucifugus	89.47	0.00e+00	802.00
IUUC-Nfi-068399	Neosartorya fischeri	40.32	4.00e-91	328.00
IUUC-Ncr-068711	Neurospora crassa	39.95	4.00e-82	298.00
IUUC-Nle-069982	Nomascus leucogenys	87.75	0.00e+00	810.00
IUUC-Opr-070596	Ochotona princeps	88.20	0.00e+00	811.00
IUUC-Ont-072374	Oreochromis niloticus	76.07	0.00e+00	660.00
IUUC-Oan-073166	Ornithorhynchus anatinus	90.63	0.00e+00	625.00
IUUC-Ocu-074371	Oryctolagus cuniculus	89.70	0.00e+00	806.00
IUUC-Oba-075083	Oryza barthii	41.31	5.00e-83	301.00
IUUC-Obr-076405	Oryza brachyantha	42.45	2.00e-79	289.00
IUUC-Ogl-077683	Oryza glaberrima	41.31	1.00e-82	300.00
IUUC-Ogu-078486	Oryza glumaepatula	41.81	5.00e-83	301.00
IUUC-Oin-079679	Oryza indica	41.77	3.00e-86	312.00
IUUC-Olo-080420	Oryza longistaminata	40.45	1.00e-71	263.00
IUUC-Ome-081230	Oryza meridionalis	41.56	4.00e-86	311.00
IUUC-Oni-082961	Oryza nivara	41.56	4.00e-86	311.00
IUUC-Opu-083189	Oryza punctata	41.22	1.00e-82	300.00
IUUC-Oru-084353	Oryza rufipogon	41.82	4.00e-84	304.00
IUUC-Osa-085458	Oryza sativa	41.56	4.00e-86	311.00
IUUC-Ola-086940	Oryzias latipes	74.60	0.00e+00	667.00
IUUC-Olu-087580	Ostreococcus lucimarinus	39.31	2.00e-64	239.00
IUUC-Oga-088703	Otolemur garnettii	84.30	0.00e+00	760.00
IUUC-Oar-089829	Ovis aries	88.34	0.00e+00	776.00
IUUC-Ptr-090838	Pan troglodytes	87.53	0.00e+00	806.00
IUUC-Pan-092261	Papio anubis	87.11	0.00e+00	801.00
IUUC-Psi-093020	Pelodiscus sinensis	90.36	0.00e+00	827.00
IUUC-Pno-094858	Phaeosphaeria nodorum	38.42	5.00e-69	254.00
IUUC-Ppa-095531	Physcomitrella patens	44.13	1.00e-92	333.00
IUUC-Pfo-096812	Poecilia formosa	67.79	2.00e-164	572.00
IUUC-Pab-097805	Pongo abelii	77.35	0.00e+00	683.00
IUUC-Pop-100051	Populus trichocarpa	45.36	2.00e-83	303.00
IUUC-Pca-100152	Procavia capensis	87.87	0.00e+00	806.00
IUUC-Ppe-101244	Prunus persica	45.74	4.00e-87	314.00
IUUC-Pva-102529	Pteropus vampyrus	83.96	0.00e+00	761.00
IUUC-Pgr-103550	Puccinia graminis	40.80	4.00e-97	348.00
IUUC-Ptt-103951	Puccinia triticina	38.26	1.00e-78	287.00
IUUC-Pte-104151	Pyrenophora teres	39.63	7.00e-71	261.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	40.68	1.00e-72	266.00
IUUC-Rno-105747	Rattus norvegicus	89.02	0.00e+00	800.00
IUUC-Sce-106418	Saccharomyces cerevisiae	34.94	8.00e-60	224.00
IUUC-Sha-107334	Sarcophilus harrisii	88.44	0.00e+00	802.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	36.30	1.00e-65	243.00
IUUC-Spo-108189	Schizosaccharomyces pombe	37.86	3.00e-73	268.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	40.39	3.00e-89	322.00
IUUC-Smo-108924	Selaginella moellendorffii	46.43	6.00e-93	334.00
IUUC-Sit-110102	Setaria italica	43.11	2.00e-85	309.00
IUUC-Sly-111668	Solanum lycopersicum	44.76	2.00e-84	306.00
IUUC-Stu-111928	Solanum tuberosum	44.50	6.00e-84	304.00
IUUC-Sar-113266	Sorex araneus	75.97	0.00e+00	638.00
IUUC-Sbi-114134	Sorghum bicolor	42.11	1.00e-84	306.00
IUUC-Sre-115114	Sporisorium reilianum	43.75	1.00e-92	333.00
IUUC-Ssc-115443	Sus scrofa	89.47	0.00e+00	804.00
IUUC-Tgu-117157	Taeniopygia guttata	98.38	0.00e+00	816.00
IUUC-Tru-118587	Takifugu rubripes	73.03	0.00e+00	634.00
IUUC-Tsy-119157	Tarsius syrichta	90.80	3.00e-176	611.00
IUUC-Tni-120427	Tetraodon nigroviridis	74.60	0.00e+00	651.00
IUUC-Tca-121368	Theobroma cacao	44.96	9.00e-89	320.00
IUUC-Tre-122074	Trichoderma reesei	40.21	2.00e-79	290.00
IUUC-Tvi-122349	Trichoderma virens	38.46	3.00e-77	282.00
IUUC-Tae-125651	Triticum aestivum	42.32	4.00e-85	308.00
IUUC-Tur-126532	Triticum urartu	43.08	2.00e-86	312.00
IUUC-Tme-126951	Tuber melanosporum	44.79	1.00e-93	337.00
IUUC-Tbe-128136	Tupaia belangeri	78.62	0.00e+00	701.00
IUUC-Ttr-129169	Tursiops truncatus	91.28	7.00e-156	543.00
IUUC-Uma-129399	Ustilago maydis	44.62	1.00e-89	323.00
IUUC-Vda-129842	Verticillium dahliae	40.31	1.00e-82	300.00
IUUC-Vpa-130440	Vicugna pacos	87.97	0.00e+00	809.00
IUUC-Vvi-131075	Vitis vinifera	46.58	3.00e-87	315.00
IUUC-Xtr-132713	Xenopus tropicalis	44.10	5.00e-82	297.00
IUUC-Xma-133002	Xiphophorus maculatus	81.02	7.00e-141	493.00
IUUC-Yli-134569	Yarrowia lipolytica	36.54	3.00e-67	248.00
IUUC-Zma-135799	Zea mays	40.80	6.00e-84	304.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence