• HOME
  • BROWSE
  • SEARCH
  • LINK
  • DOWNLOAD
  • USER GUIDE
  • Protein
  • Gene
  • Annotation
  • Classification
  • Domain Profile
  • Function
  • Protein Sequence
  • Nucleotide Sequence
  • Keyword
  • GO
  • Orthology
  • TOP

Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-105548
UUCD1 version UUC-RaN-00790
Ensembl Protein ID ENSRNOP00000029085.4
UniProt Accession Q3SWS8; RAE1L_RAT
Genbank Protein ID AAI04722.1; AAI05759.1
Protein Name mRNA export factor; Rae1 protein homolog; mRNA-associated protein mrnp 41
Genbank Nucleotide ID BC104721; BC105758
Gene Name Rae1; Mrnp41
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000021295.5 ENSRNOT00000038182.5 ENSRNOP00000029085.4
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNATRANSFACmiRNAMapRAID2
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 3.80e-19 68.4 126 162
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf...sd.tllvsGsdDgtikvWDlrtgv 34
           H ++v  +++   ++   + +Gs+D+t+k WD+r+ +
   Q: 126  HDAPVKTIHWikaPNySCVMTGSWDKTLKFWDTRSSN 162
           999**********877789*************99865 PP
   
Organism Rattus norvegicus
Functional Description
(View)

Functional Description


     Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton (By similarity).
 Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton (By similarity).
Protein Sequence
(Fasta)
MSLFGTTSGF GTGGTSMFGS TTTDNHNPMK DIEVTSSPDD SIGCLSFSPP TLPGNFLIAG 60
SWANDVRCWE VQDSGQTIPK AQQMHTGPVL DVCWSDDGSK VFTASCDKTA KMWDLNSNQA 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105548|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGCCCCCGTC CCCGCCAGCC GCGCTCCCTC AGGAAAGCCC CCGGCCCGCG TGGGGAAAAC 60
TGAGTCCCTC TCTGCAGCCG GACCCTGTGC GCTCCGCCAG GTAGGCCGGG ACTTTCCGCG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105548|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0005737--C:cytoplasm
GO:0001650--C:fibrillar center
GO:0005635--C:nuclear envelope
GO:0005643--C:nuclear pore
GO:0003723--F:RNA binding
GO:0071407--P:cellular response to organic cyclic compound
KEGG rno:362281
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000293 Aegilops tauschii 46.05 3.00e-82 298.00
IUUC-Aml-002179 Ailuropoda melanoleuca 98.84 0.00e+00 725.00
IUUC-Atr-002609 Amborella trichopoda 50.15 2.00e-93 335.00
IUUC-Apl-003637 Anas platyrhynchos 95.65 0.00e+00 702.00
IUUC-Aca-005042 Anolis carolinensis 95.07 0.00e+00 698.00
IUUC-Aly-006015 Arabidopsis lyrata 50.84 1.00e-97 349.00
IUUC-Ath-007659 Arabidopsis thaliana 50.56 2.00e-97 348.00
IUUC-Ago-008004 Ashbya gossypii 40.87 5.00e-73 267.00
IUUC-Acl-008030 Aspergillus clavatus 45.45 2.00e-80 292.00
IUUC-Afl-008636 Aspergillus flavus 45.45 4.00e-80 291.00
IUUC-Afu-009121 Aspergillus fumigatus 46.04 1.00e-81 296.00
IUUC-Ani-009238 Aspergillus nidulans 45.16 1.00e-79 290.00
IUUC-Ang-009801 Aspergillus niger 46.18 9.00e-80 290.00
IUUC-Aor-009974 Aspergillus oryzae 45.45 4.00e-80 291.00
IUUC-Ate-010406 Aspergillus terreus 45.45 4.00e-81 295.00
IUUC-Ame-011368 Astyanax mexicanus 91.59 0.00e+00 689.00
IUUC-Bgr-012233 Blumeria graminis 41.92 4.00e-70 258.00
IUUC-Bta-012856 Bos taurus 98.84 0.00e+00 725.00
IUUC-Bci-013964 Botrytis cinerea 44.57 6.00e-75 274.00
IUUC-Bdi-015050 Brachypodium distachyon 48.72 5.00e-85 307.00
IUUC-Bol-015367 Brassica oleracea 50.28 3.00e-94 338.00
IUUC-Bra-016903 Brassica rapa 50.28 3.00e-94 338.00
IUUC-Cel-018563 Caenorhabditis elegans 52.63 2.00e-99 355.00
IUUC-Cja-019700 Callithrix jacchus 98.84 0.00e+00 724.00
IUUC-Cfa-020337 Canis familiaris 99.13 0.00e+00 725.00
IUUC-Cpo-021858 Cavia porcellus 98.55 0.00e+00 723.00
IUUC-Cre-022748 Chlamydomonas reinhardtii 44.35 5.00e-82 297.00
IUUC-Csa-023322 Chlorocebus sabaeus 98.55 0.00e+00 721.00
IUUC-Cho-024533 Choloepus hoffmanni 71.01 7.00e-135 473.00
IUUC-Cin-025393 Ciona intestinalis 73.37 3.00e-161 560.00
IUUC-Csv-026093 Ciona savignyi 72.02 2.00e-161 561.00
IUUC-Cgl-026503 Colletotrichum gloeosporioides 36.98 2.00e-52 199.00
IUUC-Cne-026774 Cryptococcus neoformans 42.24 8.00e-68 250.00
IUUC-Cme-027243 Cyanidioschyzon merolae 36.46 2.00e-64 239.00
IUUC-Dre-028159 Danio rerio 92.17 0.00e+00 692.00
IUUC-Dno-028852 Dasypus novemcinctus 99.13 0.00e+00 725.00
IUUC-Dor-030445 Dipodomys ordii 82.32 2.00e-165 574.00
IUUC-Dse-031161 Dothistroma septosporum 42.11 8.00e-66 243.00
IUUC-Dme-032009 Drosophila melanogaster 68.77 2.00e-148 518.00
IUUC-Eca-033306 Equus caballus 99.13 0.00e+00 725.00
IUUC-Fca-035579 Felis catus 99.13 0.00e+00 725.00
IUUC-Fal-037582 Ficedula albicollis 95.65 0.00e+00 703.00
IUUC-Fox-037772 Fusarium oxysporum 42.14 1.00e-71 263.00
IUUC-Fso-038368 Fusarium solani 41.67 5.00e-72 264.00
IUUC-Gmo-038500 Gadus morhua 89.86 0.00e+00 680.00
IUUC-Ggr-040019 Gaeumannomyces graminis 42.18 3.00e-72 265.00
IUUC-Gga-040684 Gallus gallus 95.65 0.00e+00 701.00
IUUC-Gac-042592 Gasterosteus aculeatus 90.72 0.00e+00 681.00
IUUC-Gma-042917 Glycine max 51.58 2.00e-94 338.00
IUUC-Ggo-044965 Gorilla gorilla 98.84 0.00e+00 723.00
IUUC-Hsa-046779 Homo sapiens 98.74 0.00e+00 664.00
IUUC-Hvu-047380 Hordeum vulgare 48.43 1.00e-86 312.00
IUUC-Itr-048819 Ictidomys tridecemlineatus 98.84 0.00e+00 724.00
IUUC-Kpa-049284 Komagataella pastoris 42.98 8.00e-74 270.00
IUUC-Lch-050559 Latimeria chalumnae 80.59 8.00e-178 616.00
IUUC-Lpe-051050 Leersia perrieri 50.87 1.00e-93 335.00
IUUC-Loc-052874 Lepisosteus oculatus 91.30 0.00e+00 681.00
IUUC-Lma-053085 Leptosphaeria maculans 39.42 2.00e-63 236.00
IUUC-Laf-053980 Loxodonta africana 98.84 0.00e+00 724.00
IUUC-Mcc-055408 Macaca mulatta 98.84 0.00e+00 723.00
IUUC-Meu-056551 Macropus eugenii 88.46 0.00e+00 630.00
IUUC-Mor-057248 Magnaporthe oryzae 43.82 5.00e-75 274.00
IUUC-Mpo-057390 Magnaporthe poae 41.89 1.00e-71 263.00
IUUC-Mtr-057675 Medicago truncatula 50.84 1.00e-95 342.00
IUUC-Mla-059155 Melampsora laricipopulina 44.55 8.00e-84 303.00
IUUC-Mga-060140 Meleagris gallopavo 95.71 1.00e-178 618.00
IUUC-Mvi-060311 Microbotryum violaceum 45.00 2.00e-80 292.00
IUUC-Mmr-061533 Microcebus murinus 98.84 0.00e+00 724.00
IUUC-Mdo-062593 Monodelphis domestica 97.10 0.00e+00 714.00
IUUC-Mmu-063362 Mus musculus 99.42 0.00e+00 727.00
IUUC-Mac-064968 Musa acuminata 47.79 1.00e-83 303.00
IUUC-Mpu-065722 Mustela putorius furo 99.13 0.00e+00 728.00
IUUC-Mlu-068124 Myotis lucifugus 98.84 0.00e+00 724.00
IUUC-Nfi-068595 Neosartorya fischeri 46.04 6.00e-82 297.00
IUUC-Ncr-068790 Neurospora crassa 41.57 3.00e-73 268.00
IUUC-Nle-069395 Nomascus leucogenys 84.64 2.00e-170 591.00
IUUC-Opr-070320 Ochotona princeps 90.43 0.00e+00 646.00
IUUC-Ont-071303 Oreochromis niloticus 92.17 0.00e+00 690.00
IUUC-Oan-073724 Ornithorhynchus anatinus 96.23 0.00e+00 709.00
IUUC-Ocu-074961 Oryctolagus cuniculus 98.75 0.00e+00 672.00
IUUC-Oba-075879 Oryza barthii 51.34 2.00e-92 332.00
IUUC-Obr-076326 Oryza brachyantha 50.29 2.00e-93 335.00
IUUC-Ogl-077767 Oryza glaberrima 50.87 1.00e-93 336.00
IUUC-Ogu-078760 Oryza glumaepatula 49.86 1.00e-89 323.00
IUUC-Oin-080219 Oryza indica 50.87 1.00e-93 336.00
IUUC-Olo-081007 Oryza longistaminata 50.87 1.00e-93 336.00
IUUC-Ome-081848 Oryza meridionalis 47.28 3.00e-87 315.00
IUUC-Oni-082844 Oryza nivara 50.87 1.00e-93 336.00
IUUC-Opu-083511 Oryza punctata 47.54 4.00e-89 321.00
IUUC-Oru-085012 Oryza rufipogon 50.87 1.00e-93 336.00
IUUC-Osa-085287 Oryza sativa 50.87 1.00e-93 336.00
IUUC-Ola-087292 Oryzias latipes 91.59 0.00e+00 686.00
IUUC-Olu-087689 Ostreococcus lucimarinus 48.69 8.00e-91 327.00
IUUC-Oga-088821 Otolemur garnettii 99.13 0.00e+00 725.00
IUUC-Oar-090253 Ovis aries 99.13 0.00e+00 725.00
IUUC-Ptr-091097 Pan troglodytes 97.39 0.00e+00 714.00
IUUC-Pan-091835 Papio anubis 98.84 0.00e+00 724.00
IUUC-Psi-093000 Pelodiscus sinensis 95.38 0.00e+00 704.00
IUUC-Pma-094273 Petromyzon marinus 86.36 0.00e+00 664.00
IUUC-Pno-094920 Phaeosphaeria nodorum 38.70 7.00e-57 214.00
IUUC-Ppa-095202 Physcomitrella patens 51.67 1.00e-74 272.00
IUUC-Pfo-096388 Poecilia formosa 92.17 0.00e+00 691.00
IUUC-Pab-097533 Pongo abelii 98.84 0.00e+00 724.00
IUUC-Pop-099348 Populus trichocarpa 49.16 2.00e-89 322.00
IUUC-Pca-100638 Procavia capensis 79.73 3.00e-66 244.00
IUUC-Ppe-101817 Prunus persica 51.90 3.00e-95 341.00
IUUC-Pva-102233 Pteropus vampyrus 98.26 0.00e+00 718.00
IUUC-Pgr-103342 Puccinia graminis 44.83 1.00e-84 306.00
IUUC-Ptt-103836 Puccinia triticina 44.68 2.00e-85 309.00
IUUC-Pte-104387 Pyrenophora teres 40.58 4.00e-65 241.00
IUUC-Pyt-104737 Pyrenophora triticirepentis 40.56 9.00e-66 243.00
IUUC-Sce-106379 Saccharomyces cerevisiae 41.91 6.00e-75 274.00
IUUC-Sha-107617 Sarcophilus harrisii 95.90 3.00e-144 503.00
IUUC-Sja-107668 Schizosaccharomyces japonicus 45.48 9.00e-79 286.00
IUUC-Spo-108293 Schizosaccharomyces pombe 46.24 5.00e-86 311.00
IUUC-Smo-109611 Selaginella moellendorffii 50.14 9.00e-95 340.00
IUUC-Sit-110436 Setaria italica 49.00 3.00e-91 328.00
IUUC-Sly-111037 Solanum lycopersicum 49.72 1.00e-96 346.00
IUUC-Stu-112371 Solanum tuberosum 37.05 9.00e-51 193.00
IUUC-Sbi-114361 Sorghum bicolor 48.71 2.00e-91 329.00
IUUC-Sre-114922 Sporisorium reilianum 40.41 7.00e-66 244.00
IUUC-Ssc-116305 Sus scrofa 99.13 0.00e+00 725.00
IUUC-Tgu-116751 Taeniopygia guttata 95.65 0.00e+00 703.00
IUUC-Tru-117798 Takifugu rubripes 91.59 0.00e+00 685.00
IUUC-Tsy-119523 Tarsius syrichta 98.91 2.00e-166 577.00
IUUC-Tni-120477 Tetraodon nigroviridis 91.35 0.00e+00 679.00
IUUC-Tca-121802 Theobroma cacao 51.13 4.00e-96 344.00
IUUC-Tre-121994 Trichoderma reesei 42.90 1.00e-69 256.00
IUUC-Tvi-122631 Trichoderma virens 42.14 6.00e-68 251.00
IUUC-Tae-122978 Triticum aestivum 48.72 2.00e-85 309.00
IUUC-Tur-126390 Triticum urartu 50.29 4.00e-92 331.00
IUUC-Tme-127152 Tuber melanosporum 47.63 1.00e-79 290.00
IUUC-Tbe-127319 Tupaia belangeri 70.43 2.00e-135 475.00
IUUC-Ttr-129207 Tursiops truncatus 97.97 0.00e+00 710.00
IUUC-Uma-129342 Ustilago maydis 39.94 4.00e-60 225.00
IUUC-Vda-129865 Verticillium dahliae 41.25 1.00e-73 270.00
IUUC-Vpa-130076 Vicugna pacos 88.45 2.00e-161 561.00
IUUC-Vvi-131104 Vitis vinifera 50.43 8.00e-95 340.00
IUUC-Xtr-132917 Xenopus tropicalis 73.28 3.00e-146 511.00
IUUC-Xma-133615 Xiphophorus maculatus 92.17 0.00e+00 691.00
IUUC-Yli-134431 Yarrowia lipolytica 39.50 4.00e-71 261.00
IUUC-Zma-135142 Zea mays 49.57 6.00e-93 333.00
Created Date 25-Jun-2017

https://dev.news.makassarkota.go.id/public/pgsoft-demo/ https://jdih.sumbawabaratkab.go.id/lato/pg-soft-demo/ https://dev.news.makassarkota.go.id/public/slot-gacor/ http://pbb.tanahbumbukab.go.id/-/slot-gacor/ slot gacor https://siakad.unipra.ac.id/sass/slot-gacor-x500/ http://kpm.dinus.ac.id/assets/images/berita/slot/
Copyright © 2004-2017.The CUCKOO Workgroup. All Rights Reserved