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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105290
Ensembl Protein ID ENSRNOP00000027073.3
UniProt Accession P62986; P02248; P02249; P02250; P14793; P62989; Q29120; Q63446; Q91887; Q91888; RL40_RAT
Genbank Protein ID CAA57958.1; AAC52495.1
Protein Name Ubiquitin-60S ribosomal protein L40; Ubiquitin A-52 residue ribosomal protein fusion product 1; Ubiquitin; 60S ribosomal protein L40; CEP52
Genbank Nucleotide ID X82636; U25064
Gene Name Uba52; Ubcep2
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000019974.6 ENSRNOT00000027073.6 ENSRNOP00000027073.3
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNATRANSFACRAID2
Protein-protein Interaction
IIDiRefIndexMentha
Post-translational Modifications (PTMs)
dbPTMUniProt
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
ULD/UBL/NEDD8 2.60e-41 140.1 1 76
ULD/UDP/UBQ/UBQ_PIM 1.60e-29 102.0 1 73
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   ULD/UBL/NEDD8
   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e+sdtie++k+++++keGiPP+qqrli+aGkqled++t++dyn++k+s+LhLvL+LrGG
   Q: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
           89*************************************************************************9 PP
   

   ULD/UDP/UBQ/UBQ_PIM
   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dt+e++K+ki+++ g+pp+qq+LI+aGk+L+D +tLs+++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
           99********************************************************************986 PP
   
Organism Rattus norvegicus
Functional Description
(View)

Functional Description


     60S ribosomal protein L40: Component of the 60S subunit of the ribosome.
 60S ribosomal protein L40: Component of the 60S subunit of the ribosome.
Protein Sequence
(Fasta)
MQIFVKTLTG KTITLEVEPS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN 60
IQKESTLHLV LRLRGGIIEP SLRQLAQKYN CDKMICRKCY ARLHPRAVNC RKKKCGHTNN 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105290|ULD,NEDD8;ULD,UBQ_PIM|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CCGCTGTCCT CTTTCTCTTC AACGAGGCGG CCGAGCGGGT TGGTGTTGGC CCCGTCGCTG 60
ACGGGCTGGT GGCGCCTGGG CCGGGGCCGG GATGCGGCGG GAACCGGCGA GGGGACTGTA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105290|ULD,NEDD8;ULD,UBQ_PIM|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0903--Direct protein sequencing
KW-1017--Isopeptide bond
KW-0488--Methylation
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
KW-0832--Ubl conjugation
Interpro

IPR001975--Ribosomal_L40e
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom
PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2
Pfam

PF01020--Ribosomal_L40e
PF00240--ubiquitin
PRINTS

PR00348--UBIQUITIN
SMART

SM01377--Ribosomal_L40e
SM00213--UBQ
Gene Ontology

GO:0005737--C:cytoplasm
GO:0022625--C:cytosolic large ribosomal subunit
GO:0005783--C:endoplasmic reticulum
GO:0070062--C:extracellular exosome
GO:0005615--C:extracellular space
GO:0005765--C:lysosomal membrane
GO:0043209--C:myelin sheath
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0005886--C:plasma membrane
GO:0003735--F:structural constituent of ribosome
GO:0017085--P:response to insecticide
GO:0006412--P:translation
KEGG rno:64156
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001006 Aegilops tauschii 57.62 1.00e-42 164.00
IUUC-Aml-001246 Ailuropoda melanoleuca 100.00 2.00e-72 263.00
IUUC-Atr-003081 Amborella trichopoda 72.87 1.00e-44 171.00
IUUC-Apl-004069 Anas platyrhynchos 98.80 4.00e-45 171.00
IUUC-Ath-007098 Arabidopsis thaliana 92.19 1.00e-66 244.00
IUUC-Ago-007932 Ashbya gossypii 89.84 4.00e-65 239.00
IUUC-Acl-008350 Aspergillus clavatus 84.21 1.00e-61 227.00
IUUC-Afl-008554 Aspergillus flavus 90.62 1.00e-65 241.00
IUUC-Afu-008984 Aspergillus fumigatus 89.06 6.00e-64 235.00
IUUC-Ang-009609 Aspergillus niger 89.84 1.00e-64 237.00
IUUC-Aor-009991 Aspergillus oryzae 88.98 2.00e-63 233.00
IUUC-Ate-010252 Aspergillus terreus 90.40 6.00e-64 238.00
IUUC-Ame-010785 Astyanax mexicanus 96.84 6.00e-52 194.00
IUUC-Bgr-012115 Blumeria graminis 90.40 1.00e-63 235.00
IUUC-Bta-013360 Bos taurus 100.00 2.00e-72 263.00
IUUC-Bci-013851 Botrytis cinerea 90.62 9.00e-66 241.00
IUUC-Bdi-014499 Brachypodium distachyon 91.41 3.00e-66 243.00
IUUC-Bol-015961 Brassica oleracea 92.19 1.00e-66 244.00
IUUC-Cel-018677 Caenorhabditis elegans 92.97 5.00e-66 242.00
IUUC-Cja-019572 Callithrix jacchus 100.00 2.00e-72 263.00
IUUC-Cfa-020339 Canis familiaris 100.00 2.00e-72 263.00
IUUC-Cpo-021534 Cavia porcellus 100.00 2.00e-72 263.00
IUUC-Cre-022567 Chlamydomonas reinhardtii 91.41 1.00e-65 241.00
IUUC-Csa-023398 Chlorocebus sabaeus 100.00 2.00e-72 263.00
IUUC-Cin-025266 Ciona intestinalis 92.19 1.00e-66 244.00
IUUC-Csv-026105 Ciona savignyi 92.13 2.00e-66 244.00
IUUC-Cgl-026502 Colletotrichum gloeosporioides 90.40 1.00e-63 237.00
IUUC-Cne-026913 Cryptococcus neoformans 86.72 3.00e-63 233.00
IUUC-Cme-027344 Cyanidioschyzon merolae 93.41 6.00e-46 175.00
IUUC-Dre-028761 Danio rerio 98.44 2.00e-71 260.00
IUUC-Dno-028899 Dasypus novemcinctus 99.22 3.00e-71 259.00
IUUC-Dme-031588 Drosophila melanogaster 97.66 1.00e-70 257.00
IUUC-Ete-033120 Echinops telfairi 100.00 2.00e-72 263.00
IUUC-Eca-033787 Equus caballus 100.00 2.00e-72 263.00
IUUC-Fca-035725 Felis catus 100.00 2.00e-72 263.00
IUUC-Fox-037870 Fusarium oxysporum 90.62 8.00e-66 241.00
IUUC-Fso-038461 Fusarium solani 95.00 1.00e-40 156.00
IUUC-Gmo-039163 Gadus morhua 98.44 2.00e-71 260.00
IUUC-Ggr-040034 Gaeumannomyces graminis 90.62 6.00e-66 242.00
IUUC-Gga-040909 Gallus gallus 98.44 1.00e-71 260.00
IUUC-Gac-041640 Gasterosteus aculeatus 99.22 4.00e-72 262.00
IUUC-Gma-043254 Glycine max 92.19 3.00e-67 246.00
IUUC-Ggo-045411 Gorilla gorilla 100.00 2.00e-72 263.00
IUUC-Hsa-046609 Homo sapiens 79.71 9.00e-57 211.00
IUUC-Hvu-047579 Hordeum vulgare 69.12 2.00e-49 187.00
IUUC-Itr-048586 Ictidomys tridecemlineatus 100.00 5.00e-73 267.00
IUUC-Kpa-049279 Komagataella pastoris 89.06 1.00e-64 238.00
IUUC-Lch-049971 Latimeria chalumnae 97.66 5.00e-71 260.00
IUUC-Lpe-051472 Leersia perrieri 80.30 1.00e-51 197.00
IUUC-Loc-052117 Lepisosteus oculatus 99.22 3.00e-72 263.00
IUUC-Lma-053049 Leptosphaeria maculans 92.97 5.00e-67 245.00
IUUC-Laf-054284 Loxodonta africana 100.00 4.00e-73 267.00
IUUC-Mcc-055710 Macaca mulatta 98.46 1.00e-71 262.00
IUUC-Meu-056411 Macropus eugenii 100.00 2.00e-72 263.00
IUUC-Mor-057008 Magnaporthe oryzae 89.06 1.00e-64 238.00
IUUC-Mpo-057360 Magnaporthe poae 89.84 2.00e-65 240.00
IUUC-Mtr-058437 Medicago truncatula 91.41 8.00e-66 241.00
IUUC-Mla-059080 Melampsora laricipopulina 87.38 3.00e-49 186.00
IUUC-Mmr-061335 Microcebus murinus 93.75 1.00e-65 240.00
IUUC-Mdo-062752 Monodelphis domestica 100.00 2.00e-72 263.00
IUUC-Mmu-063548 Mus musculus 100.00 4.00e-73 267.00
IUUC-Mac-064915 Musa acuminata 91.41 4.00e-66 242.00
IUUC-Mpu-066513 Mustela putorius furo 100.00 2.00e-72 263.00
IUUC-Mlu-068010 Myotis lucifugus 97.66 8.00e-71 258.00
IUUC-Nfi-068358 Neosartorya fischeri 90.48 6.00e-64 235.00
IUUC-Ncr-068799 Neurospora crassa 90.62 2.00e-65 240.00
IUUC-Opr-070655 Ochotona princeps 100.00 2.00e-72 263.00
IUUC-Ont-072180 Oreochromis niloticus 100.00 3.00e-71 259.00
IUUC-Oan-073196 Ornithorhynchus anatinus 100.00 2.00e-72 263.00
IUUC-Oba-075092 Oryza barthii 92.19 9.00e-67 244.00
IUUC-Obr-076156 Oryza brachyantha 92.19 7.00e-67 245.00
IUUC-Ogl-077471 Oryza glaberrima 92.19 9.00e-67 244.00
IUUC-Ogu-078259 Oryza glumaepatula 92.19 9.00e-67 244.00
IUUC-Oin-079901 Oryza indica 92.19 9.00e-67 244.00
IUUC-Olo-080789 Oryza longistaminata 43.53 3.00e-16 78.60
IUUC-Ome-081343 Oryza meridionalis 92.19 9.00e-67 244.00
IUUC-Oni-082301 Oryza nivara 85.26 6.00e-33 133.00
IUUC-Opu-083839 Oryza punctata 66.17 3.00e-36 146.00
IUUC-Oru-085252 Oryza rufipogon 92.19 9.00e-67 244.00
IUUC-Osa-085747 Oryza sativa 79.10 1.00e-50 191.00
IUUC-Ola-086333 Oryzias latipes 97.66 1.00e-70 257.00
IUUC-Olu-087819 Ostreococcus lucimarinus 82.81 4.00e-59 219.00
IUUC-Oga-088027 Otolemur garnettii 100.00 2.00e-72 263.00
IUUC-Oar-090419 Ovis aries 100.00 2.00e-72 263.00
IUUC-Ptr-091593 Pan troglodytes 100.00 2.00e-72 263.00
IUUC-Pan-091806 Papio anubis 96.09 4.00e-68 249.00
IUUC-Psi-093654 Pelodiscus sinensis 100.00 2.00e-72 263.00
IUUC-Ppa-095174 Physcomitrella patens 90.62 1.00e-65 240.00
IUUC-Pfo-096492 Poecilia formosa 99.22 5.00e-72 262.00
IUUC-Pab-098004 Pongo abelii 100.00 2.00e-72 263.00
IUUC-Pop-098929 Populus trichocarpa 91.41 4.00e-66 242.00
IUUC-Ppe-101497 Prunus persica 92.97 7.00e-67 244.00
IUUC-Pva-102945 Pteropus vampyrus 100.00 2.00e-72 263.00
IUUC-Pgr-103268 Puccinia graminis 86.72 6.00e-64 236.00
IUUC-Ptt-103804 Puccinia triticina 90.10 3.00e-51 193.00
IUUC-Pte-104101 Pyrenophora teres 92.19 1.00e-66 244.00
IUUC-Pyt-104639 Pyrenophora triticirepentis 92.19 3.00e-66 243.00
IUUC-Sce-106249 Saccharomyces cerevisiae 89.84 3.00e-65 239.00
IUUC-Sha-106570 Sarcophilus harrisii 100.00 2.00e-72 263.00
IUUC-Sja-107834 Schizosaccharomyces japonicus 91.41 5.00e-66 242.00
IUUC-Spo-108045 Schizosaccharomyces pombe 90.62 3.00e-65 239.00
IUUC-Ssl-108670 Sclerotinia sclerotiorum 91.41 6.00e-66 242.00
IUUC-Sit-110085 Setaria italica 88.28 2.00e-65 241.00
IUUC-Sly-111884 Solanum lycopersicum 91.41 4.00e-66 242.00
IUUC-Stu-112385 Solanum tuberosum 90.91 4.00e-62 229.00
IUUC-Sar-112942 Sorex araneus 97.66 3.00e-71 259.00
IUUC-Sbi-114790 Sorghum bicolor 91.41 3.00e-66 243.00
IUUC-Sre-114908 Sporisorium reilianum 89.84 2.00e-64 236.00
IUUC-Ssc-116417 Sus scrofa 100.00 2.00e-72 263.00
IUUC-Tru-117557 Takifugu rubripes 98.44 2.00e-71 260.00
IUUC-Tni-119715 Tetraodon nigroviridis 98.44 2.00e-71 260.00
IUUC-Tca-121404 Theobroma cacao 92.19 1.00e-66 244.00
IUUC-Tvi-122611 Trichoderma virens 89.84 2.00e-65 240.00
IUUC-Tae-123019 Triticum aestivum 74.52 2.00e-61 228.00
IUUC-Tur-126527 Triticum urartu 91.41 3.00e-66 243.00
IUUC-Tme-127138 Tuber melanosporum 91.20 1.00e-64 238.00
IUUC-Tbe-127851 Tupaia belangeri 100.00 1.00e-40 157.00
IUUC-Ttr-128939 Tursiops truncatus 100.00 2.00e-72 263.00
IUUC-Uma-129619 Ustilago maydis 89.84 2.00e-64 236.00
IUUC-Vda-129775 Verticillium dahliae 88.89 2.00e-63 233.00
IUUC-Vvi-130859 Vitis vinifera 92.97 3.00e-67 246.00
IUUC-Xtr-131921 Xenopus tropicalis 100.00 2.00e-72 263.00
IUUC-Xma-134071 Xiphophorus maculatus 99.22 5.00e-72 262.00
IUUC-Yli-134671 Yarrowia lipolytica 90.62 3.00e-65 239.00
Created Date 25-Jun-2017

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