iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA	RAID2
Protein-protein Interaction
IID	iRefIndex	PINA
Post-translational Modifications (PTMs)
dbPTM
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	1.50e-09	37.9	2	64

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 3    vtvksldgs.eltlkvnpsdtVaeLKekiekklgippeqqrLiykGkiLeddktLadyglkdgstihll 70
           v+vk+l  +  l+  v   + V+ +K+kie ++gip+e+qrL y+G+ Led     d+g+  + ti++ 
   Q: 2    VFVKTLHRTlFLE--VAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLEDS----DCGIDSEATIYVN 64
           5666666654444..445556*******************************....*********9986 PP

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MVFVKTLHRT LFLEVAANED VLSIKQKIEA AEGIPAEEQR LCYAGRQLED SDCGIDSEAT 60
IYVNLELLGG AKKRKKKVYT TPKKNKRKPK KVKLAVLKYY KIDENGKITR LRKECQQPSC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTTTTTGCA GAACTAGGGT CAGTCAAGCA TGGTCTTCGT TAAGACACTC CACAGAACCT 60
TGTTCCTCGA GGTCGCCGCC AACGAGGATG TCTTGAGCAT CAAGCAAAAA ATCGAGGCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-1017--Isopeptide bond
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR002906--Ribosomal_S27a
IPR011332--Ribosomal_zn-bd
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF01599--Ribosomal_S27
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM01402--Ribosomal_S27
SM00213--UBQ

Gene Ontology

GO:0005840--C:ribosome
GO:0046872--F:metal ion binding
GO:0003735--F:structural constituent of ribosome
GO:0006412--P:translation

KEGG

cel:CELE_H06I04.4

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Cre-022953	Chlamydomonas reinhardtii	51.37	5.00e-24	102.00
IUUC-Cne-026972	Cryptococcus neoformans	51.59	1.00e-29	120.00
IUUC-Olo-080936	Oryza longistaminata	58.49	7.00e-15	70.10
IUUC-Pma-094647	Petromyzon marinus	64.96	2.00e-19	86.30

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence