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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-007297
Ensembl Protein ID AT2G46340.1
UniProt Accession Q9SYX2; Q0WUH3; Q56WP1; Q9SKE4; Q9SKE5; SPA1_ARATH
Genbank Protein ID AAD30124.1; AAD23037.1; AAD23038.1; AEC10681.1; ANM63147.1; BAE99225.1; BAD94577.1
Protein Name Protein SUPPRESSOR OF PHYA-105 1
Genbank Nucleotide ID AF135455; AC006526; AC006526; CP002685; CP002685; AK227186; AK221994
Gene Name SPA1; At2g46340/At2g46350; F11C10.3/F11C10.4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT2G46340 AT2G46340.1 AT2G46340.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndexPINAHINTMentha
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.30e-28 97.9 807 838
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDl 30
    H+ + ++++f sd t +vsGsdD+++k+W++
   Q: 807 HQKRAWSVDFspSDpTKFVSGSDDCSVKLWSI 838
    888899*****9889***************96 PP
   

Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     Controls normal photoperiodic flowering and regulates circadian rhythms. Required for suppression of photomorphogenesis in dark-grown seedlings and for normal elongation growth of adult plants. Integral component of the COP1/SPA E3 ubiquitin-protein ligase complex. Involved in HY5, HFR1, LAF1 and CO degradation.
Controls normal photoperiodic flowering and regulates circadian rhythms. Required for suppression of photomorphogenesis in dark-grown seedlings and for normal elongation growth of adult plants. Integral component of the COP1/SPA E3 ubiquitin-protein ligase complex. Involved in HY5, HFR1, LAF1 and CO degradation.
Protein Sequence
(Fasta)
MPVMERVAEE TVATNNIQLK ARVDDVPCNK LDARHNDMVI QSETANSDCP GSSAHRNVDL 60
TKPPPPEEAA GAKLSVEELT LGNYRIVQGS NNTNVDSPRA GKFEHLYRLA RGSAFRAGDG 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-007297|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GAAAAAATTA AATAAAATAA TGTTCAAAAA ATTGTCCGCC AGAATAAAGA AAATTTGATA 60
TGTGGCTTCA AAGCCTAAAT TAATCATTAA AATAAAAAAT CAGAAAATAA GGAATGAAGA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-007297|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0067--ATP-binding
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0547--Nucleotide-binding
KW-0539--Nucleus
KW-0607--Phytochrome signaling pathway
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR011009--Kinase-like_dom
IPR000719--Prot_kinase_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50011--PROTEIN_KINASE_DOM
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00069--Pkinase
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0016604--C:nuclear body
GO:0016607--C:nuclear speck
GO:0005634--C:nucleus
GO:0016605--C:PML body
GO:0005524--F:ATP binding
GO:0042802--F:identical protein binding
GO:0004672--F:protein kinase activity
GO:0009658--P:chloroplast organization
GO:0010100--P:negative regulation of photomorphogenesis
GO:0009640--P:photomorphogenesis
GO:0010017--P:red or far-red light signaling pathway
GO:0009585--P:red, far-red light phototransduction
GO:2000028--P:regulation of photoperiodism, flowering
GO:0009637--P:response to blue light
GO:0010218--P:response to far red light
GO:0010114--P:response to red light
GO:0048575--P:short-day photoperiodism, flowering

KEGG ath:AT2G46340
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000403 Aegilops tauschii 47.52 0.00e+00 763.00
IUUC-Atr-002506 Amborella trichopoda 44.01 0.00e+00 708.00
IUUC-Aly-005520 Arabidopsis lyrata 93.51 0.00e+00 1978.00
IUUC-Bdi-014698 Brachypodium distachyon 46.67 0.00e+00 752.00
IUUC-Bol-015589 Brassica oleracea 76.13 0.00e+00 1434.00
IUUC-Bra-016642 Brassica rapa 81.73 0.00e+00 1591.00
IUUC-Gma-043294 Glycine max 48.43 0.00e+00 772.00
IUUC-Hvu-047750 Hordeum vulgare 46.51 0.00e+00 764.00
IUUC-Lpe-051349 Leersia perrieri 47.80 0.00e+00 787.00
IUUC-Mac-064712 Musa acuminata 46.94 0.00e+00 788.00
IUUC-Oba-075097 Oryza barthii 41.02 5.00e-177 614.00
IUUC-Obr-076441 Oryza brachyantha 47.97 0.00e+00 780.00
IUUC-Ogl-077669 Oryza glaberrima 47.08 0.00e+00 787.00
IUUC-Ogu-078009 Oryza glumaepatula 41.66 1.00e-178 620.00
IUUC-Oin-079775 Oryza indica 47.08 0.00e+00 788.00
IUUC-Olo-080230 Oryza longistaminata 40.94 3.00e-176 612.00
IUUC-Ome-081669 Oryza meridionalis 41.33 7.00e-177 613.00
IUUC-Oni-082065 Oryza nivara 41.13 8.00e-178 617.00
IUUC-Opu-083153 Oryza punctata 40.96 3.00e-177 615.00
IUUC-Oru-084928 Oryza rufipogon 41.13 2.00e-177 616.00
IUUC-Osa-085875 Oryza sativa 47.08 0.00e+00 788.00
IUUC-Pop-099610 Populus trichocarpa 48.52 0.00e+00 837.00
IUUC-Ppe-101782 Prunus persica 51.18 0.00e+00 877.00
IUUC-Sly-111623 Solanum lycopersicum 45.67 0.00e+00 793.00
IUUC-Stu-112382 Solanum tuberosum 46.36 0.00e+00 808.00
IUUC-Sbi-114133 Sorghum bicolor 47.94 0.00e+00 735.00
IUUC-Tca-121762 Theobroma cacao 52.30 0.00e+00 898.00
IUUC-Tae-125695 Triticum aestivum 47.69 0.00e+00 781.00
IUUC-Tur-126357 Triticum urartu 44.95 0.00e+00 721.00
IUUC-Vvi-131450 Vitis vinifera 49.51 0.00e+00 885.00
Created Date 25-Jun-2017

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