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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Sce-106381
UUCD1 version UUC-SaC-00190
Ensembl Protein ID YMR049C
UniProt Accession Q04660; D6VZM4; ERB1_YEAST
Genbank Protein ID CAA89759.1; DAA09948.1
Protein Name Ribosome biogenesis protein ERB1; Eukaryotic ribosome biogenesis protein 1
Genbank Nucleotide ID Z49703; BK006946
Gene Name ERB1; YMR049C; YM9796.02C
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
YMR049C YMR049C YMR049C
Annotation
mRNA Expression
GEOFFGED
Protein-protein Interaction
IIDiRefIndexHINTMentha
Protein 3D Structure
PDBMMDB
Post-translational Modifications (PTMs)
CPLMdbPAFdbPTMUniProt
PHOSIDABioGRID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 8.50e-15 52.8 435 471
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           gH+++v+ l+  ++   l++GsdDgt++vW++ tg+ 
   Q: 435  GHKGKVRTLSIdPSgLWLATGSDDGTVRVWEILTGRE 471
           8**********9665889*************999875 PP
   
Organism Saccharomyces cerevisiae
Functional Description
(View)

Functional Description


     Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
 Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
Protein Sequence
(Fasta)
MMAKNNKTTE AKMSKKRAAS EESDVEEDED KLLSVDGLID AEASESDEDD DEYESAVEEK 60
ESSSDKEAQD DSDDDSDAEL NKLLAEEEGD GEEDYDSSEF SDDTTSLTDR LSGVKLQTIV 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Sce-106381|E3,WD_repeat|Saccharomyces cerevisiae
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGATGGCTA AGAACAACAA AACTACCGAG GCAAAGATGT CGAAAAAGAG AGCAGCTAGC 60
GAAGAATCTG ATGTCGAGGA AGATGAGGAC AAGCTTTTAT CCGTTGACGG TTTGATCGAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Sce-106381|E3,WD_repeat|Saccharomyces cerevisiae
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0832--Ubl conjugation
KW-0853--WD repeat
Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08145--BOP1NT
PF00400--WD40
SMART

SM01035--BOP1NT
SM00320--WD40
Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0070180--F:large ribosomal subunit rRNA binding
GO:0043021--F:ribonucleoprotein complex binding
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0051302--P:regulation of cell division
GO:0042273--P:ribosomal large subunit biogenesis
GO:0006364--P:rRNA processing
KEGG sce:YMR049C
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001158 Aegilops tauschii 37.12 6.00e-106 376.00
IUUC-Aml-001507 Ailuropoda melanoleuca 39.57 7.00e-133 465.00
IUUC-Atr-003141 Amborella trichopoda 38.06 2.00e-73 267.00
IUUC-Apl-003545 Anas platyrhynchos 46.15 2.00e-74 271.00
IUUC-Aly-005649 Arabidopsis lyrata 39.76 1.00e-131 461.00
IUUC-Ath-007625 Arabidopsis thaliana 39.39 7.00e-124 436.00
IUUC-Ago-007958 Ashbya gossypii 79.27 0.00e+00 1192.00
IUUC-Acl-008344 Aspergillus clavatus 53.31 0.00e+00 688.00
IUUC-Afl-008616 Aspergillus flavus 54.32 0.00e+00 718.00
IUUC-Afu-009083 Aspergillus fumigatus 53.89 0.00e+00 682.00
IUUC-Ani-009365 Aspergillus nidulans 53.17 0.00e+00 708.00
IUUC-Ang-009796 Aspergillus niger 53.75 0.00e+00 702.00
IUUC-Aor-010015 Aspergillus oryzae 54.32 0.00e+00 718.00
IUUC-Ate-010537 Aspergillus terreus 52.50 0.00e+00 716.00
IUUC-Ame-011767 Astyanax mexicanus 47.50 4.00e-71 259.00
IUUC-Bgr-012286 Blumeria graminis 54.71 0.00e+00 729.00
IUUC-Bta-013569 Bos taurus 41.10 3.00e-144 503.00
IUUC-Bci-013820 Botrytis cinerea 53.08 0.00e+00 693.00
IUUC-Bdi-014477 Brachypodium distachyon 40.58 1.00e-134 471.00
IUUC-Bol-016099 Brassica oleracea 39.67 7.00e-132 462.00
IUUC-Bra-017174 Brassica rapa 39.67 3.00e-132 464.00
IUUC-Cel-018201 Caenorhabditis elegans 39.31 8.00e-123 432.00
IUUC-Cja-019009 Callithrix jacchus 33.23 3.00e-86 310.00
IUUC-Cfa-020173 Canis familiaris 39.07 5.00e-134 469.00
IUUC-Cpo-021796 Cavia porcellus 41.40 2.00e-144 504.00
IUUC-Cre-022650 Chlamydomonas reinhardtii 39.74 5.00e-72 263.00
IUUC-Csa-023440 Chlorocebus sabaeus 40.79 4.00e-149 519.00
IUUC-Cin-025782 Ciona intestinalis 42.71 6.00e-151 525.00
IUUC-Csv-026352 Ciona savignyi 38.33 2.00e-128 451.00
IUUC-Cgl-026393 Colletotrichum gloeosporioides 46.03 1.00e-162 564.00
IUUC-Cne-027004 Cryptococcus neoformans 46.42 0.00e+00 650.00
IUUC-Cme-027242 Cyanidioschyzon merolae 35.76 6.00e-123 432.00
IUUC-Dre-028658 Danio rerio 41.55 3.00e-153 533.00
IUUC-Dno-028883 Dasypus novemcinctus 45.15 2.00e-82 298.00
IUUC-Dor-031031 Dipodomys ordii 40.15 8.00e-148 515.00
IUUC-Dse-031443 Dothistroma septosporum 50.43 0.00e+00 677.00
IUUC-Dme-031786 Drosophila melanogaster 43.09 5.00e-154 536.00
IUUC-Eca-033677 Equus caballus 41.19 2.00e-144 504.00
IUUC-Eeu-035310 Erinaceus europaeus 38.56 1.00e-108 384.00
IUUC-Fca-035888 Felis catus 40.79 4.00e-147 513.00
IUUC-Fal-037438 Ficedula albicollis 42.55 5.00e-119 419.00
IUUC-Fox-037973 Fusarium oxysporum 51.39 0.00e+00 720.00
IUUC-Fso-038187 Fusarium solani 50.81 0.00e+00 716.00
IUUC-Gmo-039114 Gadus morhua 39.26 1.00e-71 262.00
IUUC-Ggr-039746 Gaeumannomyces graminis 50.66 0.00e+00 716.00
IUUC-Gga-040631 Gallus gallus 42.40 2.00e-89 320.00
IUUC-Gac-042582 Gasterosteus aculeatus 41.55 4.00e-145 506.00
IUUC-Gma-044307 Glycine max 40.00 4.00e-135 473.00
IUUC-Ggo-045587 Gorilla gorilla 40.82 3.00e-149 519.00
IUUC-Hsa-046319 Homo sapiens 40.94 4.00e-149 519.00
IUUC-Hvu-047526 Hordeum vulgare 39.97 4.00e-128 449.00
IUUC-Itr-048683 Ictidomys tridecemlineatus 40.79 1.00e-144 504.00
IUUC-Kpa-049221 Komagataella pastoris 61.88 0.00e+00 920.00
IUUC-Lch-049640 Latimeria chalumnae 42.81 6.00e-162 562.00
IUUC-Lpe-051135 Leersia perrieri 42.11 2.00e-67 248.00
IUUC-Loc-051930 Lepisosteus oculatus 42.64 1.00e-161 561.00
IUUC-Lma-053290 Leptosphaeria maculans 51.54 0.00e+00 687.00
IUUC-Laf-053903 Loxodonta africana 37.29 1.00e-119 421.00
IUUC-Mcc-055471 Macaca mulatta 40.49 5.00e-148 516.00
IUUC-Meu-056190 Macropus eugenii 40.82 9.00e-147 511.00
IUUC-Mor-057135 Magnaporthe oryzae 50.74 0.00e+00 675.00
IUUC-Mpo-057475 Magnaporthe poae 49.49 0.00e+00 672.00
IUUC-Mtr-058689 Medicago truncatula 37.71 5.00e-119 419.00
IUUC-Mla-059149 Melampsora laricipopulina 48.19 0.00e+00 645.00
IUUC-Mga-059645 Meleagris gallopavo 36.56 3.00e-49 186.00
IUUC-Mvi-060485 Microbotryum violaceum 48.53 1.00e-169 588.00
IUUC-Mmr-061674 Microcebus murinus 40.21 2.00e-140 491.00
IUUC-Mdo-062973 Monodelphis domestica 41.55 1.00e-151 528.00
IUUC-Mmu-064180 Mus musculus 41.25 4.00e-146 509.00
IUUC-Mac-064535 Musa acuminata 37.89 6.00e-81 293.00
IUUC-Mpu-066406 Mustela putorius furo 40.79 5.00e-147 512.00
IUUC-Mlu-067795 Myotis lucifugus 41.34 5.00e-137 479.00
IUUC-Nfi-068516 Neosartorya fischeri 53.60 0.00e+00 647.00
IUUC-Ncr-068767 Neurospora crassa 52.56 0.00e+00 664.00
IUUC-Opr-071084 Ochotona princeps 43.04 2.00e-50 191.00
IUUC-Ont-071614 Oreochromis niloticus 40.18 3.00e-155 540.00
IUUC-Oba-075980 Oryza barthii 37.18 5.00e-116 409.00
IUUC-Obr-076799 Oryza brachyantha 39.45 4.00e-130 456.00
IUUC-Ogl-077134 Oryza glaberrima 39.45 7.00e-126 442.00
IUUC-Ogu-078655 Oryza glumaepatula 38.09 9.00e-120 422.00
IUUC-Oin-079654 Oryza indica 39.45 1.00e-125 441.00
IUUC-Olo-080706 Oryza longistaminata 40.68 4.00e-68 250.00
IUUC-Ome-081716 Oryza meridionalis 40.68 7.00e-68 249.00
IUUC-Oni-082508 Oryza nivara 37.48 5.00e-118 416.00
IUUC-Opu-083707 Oryza punctata 40.68 6.00e-68 249.00
IUUC-Oru-084453 Oryza rufipogon 40.68 4.00e-68 250.00
IUUC-Osa-085811 Oryza sativa 39.30 1.00e-125 441.00
IUUC-Ola-087361 Oryzias latipes 42.37 1.00e-155 541.00
IUUC-Oga-088015 Otolemur garnettii 45.20 2.00e-82 298.00
IUUC-Oar-090058 Ovis aries 48.50 5.00e-49 186.00
IUUC-Ptr-090631 Pan troglodytes 39.21 1.00e-58 218.00
IUUC-Pan-092306 Papio anubis 40.58 3.00e-147 513.00
IUUC-Pma-094622 Petromyzon marinus 43.10 2.00e-163 566.00
IUUC-Pno-094794 Phaeosphaeria nodorum 48.45 0.00e+00 655.00
IUUC-Ppa-095528 Physcomitrella patens 36.97 3.00e-80 290.00
IUUC-Pfo-096682 Poecilia formosa 40.87 6.00e-157 545.00
IUUC-Pab-097939 Pongo abelii 40.63 9.00e-134 468.00
IUUC-Pop-099043 Populus trichocarpa 40.96 1.00e-122 431.00
IUUC-Pca-100333 Procavia capensis 40.79 9.00e-144 501.00
IUUC-Ppe-102078 Prunus persica 38.81 5.00e-129 452.00
IUUC-Pgr-103525 Puccinia graminis 48.47 2.00e-177 613.00
IUUC-Ptt-103929 Puccinia triticina 48.30 1.00e-172 598.00
IUUC-Pte-104029 Pyrenophora teres 51.18 0.00e+00 733.00
IUUC-Pyt-104446 Pyrenophora triticirepentis 51.18 0.00e+00 733.00
IUUC-Rno-105248 Rattus norvegicus 41.55 1.00e-147 514.00
IUUC-Sha-106519 Sarcophilus harrisii 42.49 1.00e-154 537.00
IUUC-Sja-107908 Schizosaccharomyces japonicus 44.93 9.00e-171 591.00
IUUC-Spo-108071 Schizosaccharomyces pombe 43.55 1.00e-164 571.00
IUUC-Smo-109604 Selaginella moellendorffii 39.53 5.00e-123 432.00
IUUC-Sit-110551 Setaria italica 40.27 7.00e-128 449.00
IUUC-Sly-110970 Solanum lycopersicum 41.41 4.00e-70 256.00
IUUC-Stu-112593 Solanum tuberosum 40.24 1.00e-132 465.00
IUUC-Sar-113123 Sorex araneus 44.92 6.00e-63 232.00
IUUC-Sbi-113945 Sorghum bicolor 39.73 7.00e-131 459.00
IUUC-Sre-115188 Sporisorium reilianum 43.80 4.00e-162 563.00
IUUC-Ssc-115352 Sus scrofa 40.97 2.00e-147 514.00
IUUC-Tru-117685 Takifugu rubripes 41.50 1.00e-157 547.00
IUUC-Tni-119982 Tetraodon nigroviridis 41.25 4.00e-153 533.00
IUUC-Tca-121664 Theobroma cacao 40.15 5.00e-135 473.00
IUUC-Tre-122229 Trichoderma reesei 51.98 0.00e+00 650.00
IUUC-Tvi-122576 Trichoderma virens 51.83 0.00e+00 652.00
IUUC-Tae-124110 Triticum aestivum 40.33 2.00e-121 427.00
IUUC-Tur-126781 Triticum urartu 37.02 1.00e-102 365.00
IUUC-Tme-127080 Tuber melanosporum 57.76 0.00e+00 813.00
IUUC-Ttr-128514 Tursiops truncatus 37.74 2.00e-87 315.00
IUUC-Uma-129556 Ustilago maydis 43.23 4.00e-159 553.00
IUUC-Vda-129715 Verticillium dahliae 52.49 0.00e+00 697.00
IUUC-Vvi-131211 Vitis vinifera 39.29 7.00e-124 436.00
IUUC-Xma-133883 Xiphophorus maculatus 40.42 1.00e-152 531.00
IUUC-Yli-134438 Yarrowia lipolytica 62.90 0.00e+00 843.00
IUUC-Zma-135341 Zea mays 36.08 4.00e-117 413.00
Created Date 25-Jun-2017

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