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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Spo-108331
UUCD1 version UUC-ScP-00091
Ensembl Protein ID SPBC6B1.10.1:pep
UniProt Accession O43071; PRP17_SCHPO
Genbank Protein ID CAA17053.1
Protein Name Pre-mRNA-processing factor 17
Genbank Nucleotide ID CU329671
Gene Name prp17; SPBC6B1.10
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
SPBC6B1.10 SPBC6B1.10.1 SPBC6B1.10.1:pep
Annotation
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexHINTMentha
Protein 3D Structure
PDBMMDB
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.40e-30 102.2 264 299
UBD/Beta-Prp 4.90e-47 158.6 257 468
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlrtg 33
           gHt +++cl+f   s++ll+sGs D++ik+W++  +
   Q: 264  GHTKGISCLRFfpiSGHLLLSGSMDNQIKIWEVYHD 299
           8*********99*9989***************8655 PP
   

   UBD/Beta-Prp
   S: 85   kcvhtlkghedsvlslsfsp.sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtlt 176
           k + t+kgh++ + +l+f+p sg+ l+sGs d+ i++w++ ++  l  t++gh + ++ +++++dg+ + s s D+t++lWd + gk+l  + 
   Q: 257  KHIFTWKGHTKGISCLRFFPiSGHLLLSGSMDNQIKIWEVYHDRSLLRTFQGHARPIRDLSFSQDGRSFLSTSFDKTIKLWDTELGKCLNCFN 349
           567789999999999999997779999999999999999999999888999999999999999999999999999999999999999999997 PP
   S: 177  gghtdsvysls..fdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnss 266
           +  ++  ++++  +d+++ +e+++g  d+++  +d+++ ++v+++  h   ++s+ f++n++r+v++s+D s r+W + +  ++k ++  + +
   Q: 350  S--DRLTNCVKfqVDPDKpNEFLAGTADKRILQFDIRSPDIVQAYDHHLGGINSITFLENGKRFVTTSDDSSMRFWEYGTPVPIKFVADIAMH 440
           6..455555551155555889999999999999999999999999999999999999999999999999999999999999999999999977 PP
   S: 267  visvavlsfgdnvlvlgsedskvniwkl 294
           +++  +l+++++ ++  s d+++ +++ 
   Q: 441  SMPRVALRPNGKSIACQSLDNCIYVYSA 468
           7777777999999998888999988876 PP
   
Organism Schizosaccharomyces pombe
Functional Description
(View)

Functional Description


     Functions in the second step of pre-mRNA splicing. Involved in splicing intron which are longer than 200 nucleotides.
 Functions in the second step of pre-mRNA splicing. Involved in splicing intron which are longer than 200 nucleotides.
Protein Sequence
(Fasta)
MLVANYSSDS EEQENSQSPN IQPLLHTENL APAVVDNVKD DLIVSKGGNS RELARNVPVN 60
EMVQPALGPA NPFVTKEQDS IKNSITGYAE REYVPNFVFN QEYYANTHAI YGKRNFDDNE 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Spo-108331|E3,WD_repeat;UBD,Beta-Prp|Schizosaccharomyces pombe
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TGTCCAAAAG CCCTTCGTTA AATTAGAAGC TAAATCTACT AAACCAATTC TTGAATTTGA 60
ATTGACAAAG CTTGCTTTTC AAAGCTTTCT TCAAGAAAAA GTTTAATCAA CAAAAACTCT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Spo-108331|E3,WD_repeat;UBD,Beta-Prp|Schizosaccharomyces pombe
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0507--mRNA processing
KW-0508--mRNA splicing
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0747--Spliceosome
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR032847--PRPF17
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0005634--C:nucleus
GO:0071014--C:post-mRNA release spliceosomal complex
GO:0000974--C:Prp19 complex
GO:0005681--C:spliceosomal complex
GO:0045292--P:mRNA cis splicing, via spliceosome
KEGG spo:SPBC6B1.10
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000473 Aegilops tauschii 48.25 3.00e-100 357.00
IUUC-Aml-002243 Ailuropoda melanoleuca 40.48 2.00e-82 297.00
IUUC-Atr-002502 Amborella trichopoda 50.58 1.00e-106 378.00
IUUC-Apl-003885 Anas platyrhynchos 42.64 4.00e-122 429.00
IUUC-Aca-004854 Anolis carolinensis 32.71 7.00e-71 259.00
IUUC-Aly-006158 Arabidopsis lyrata 49.13 2.00e-104 370.00
IUUC-Ath-007474 Arabidopsis thaliana 48.84 6.00e-104 369.00
IUUC-Ago-007726 Ashbya gossypii 37.50 3.00e-72 263.00
IUUC-Acl-008220 Aspergillus clavatus 42.94 2.00e-123 434.00
IUUC-Afl-008473 Aspergillus flavus 40.89 7.00e-121 425.00
IUUC-Afu-008773 Aspergillus fumigatus 43.23 3.00e-124 437.00
IUUC-Ani-009323 Aspergillus nidulans 41.00 3.00e-106 377.00
IUUC-Ang-009851 Aspergillus niger 42.02 6.00e-124 436.00
IUUC-Aor-009950 Aspergillus oryzae 40.89 7.00e-121 425.00
IUUC-Ate-010372 Aspergillus terreus 41.45 1.00e-124 437.00
IUUC-Ame-011660 Astyanax mexicanus 41.70 2.00e-123 434.00
IUUC-Bgr-012230 Blumeria graminis 44.77 6.00e-129 452.00
IUUC-Bta-012568 Bos taurus 42.70 4.00e-123 432.00
IUUC-Bci-013646 Botrytis cinerea 42.78 3.00e-126 442.00
IUUC-Bdi-014199 Brachypodium distachyon 48.40 3.00e-101 360.00
IUUC-Bol-015695 Brassica oleracea 37.74 8.00e-105 372.00
IUUC-Bra-017923 Brassica rapa 37.76 4.00e-108 383.00
IUUC-Cel-018535 Caenorhabditis elegans 35.76 1.00e-98 352.00
IUUC-Cja-019071 Callithrix jacchus 42.02 4.00e-123 432.00
IUUC-Cfa-020559 Canis familiaris 42.70 9.00e-123 432.00
IUUC-Cpo-022356 Cavia porcellus 41.84 6.00e-123 432.00
IUUC-Cre-022594 Chlamydomonas reinhardtii 35.26 9.00e-59 218.00
IUUC-Csa-023125 Chlorocebus sabaeus 42.02 2.00e-123 433.00
IUUC-Cho-024676 Choloepus hoffmanni 46.87 3.00e-117 413.00
IUUC-Cin-025229 Ciona intestinalis 41.15 4.00e-117 412.00
IUUC-Cgl-026739 Colletotrichum gloeosporioides 41.32 3.00e-109 386.00
IUUC-Cne-026885 Cryptococcus neoformans 39.66 2.00e-110 390.00
IUUC-Dre-027631 Danio rerio 41.63 1.00e-121 427.00
IUUC-Dno-029815 Dasypus novemcinctus 38.64 1.00e-114 404.00
IUUC-Dor-030978 Dipodomys ordii 46.46 5.00e-110 389.00
IUUC-Dse-031520 Dothistroma septosporum 43.15 3.00e-106 377.00
IUUC-Dme-032050 Drosophila melanogaster 40.83 2.00e-118 417.00
IUUC-Ete-032866 Echinops telfairi 41.61 5.00e-118 416.00
IUUC-Eca-033384 Equus caballus 42.02 6.00e-122 429.00
IUUC-Eeu-034471 Erinaceus europaeus 34.64 3.00e-84 303.00
IUUC-Fca-035727 Felis catus 42.70 3.00e-123 433.00
IUUC-Fal-036774 Ficedula albicollis 42.91 2.00e-124 437.00
IUUC-Fox-037951 Fusarium oxysporum 41.95 7.00e-124 435.00
IUUC-Fso-038287 Fusarium solani 42.21 3.00e-123 433.00
IUUC-Gmo-039670 Gadus morhua 41.03 6.00e-122 429.00
IUUC-Ggr-039764 Gaeumannomyces graminis 42.28 2.00e-121 427.00
IUUC-Gga-040293 Gallus gallus 42.69 7.00e-124 435.00
IUUC-Gac-042159 Gasterosteus aculeatus 40.78 1.00e-122 431.00
IUUC-Gma-044299 Glycine max 48.54 7.00e-101 358.00
IUUC-Ggo-044864 Gorilla gorilla 41.84 1.00e-122 431.00
IUUC-Hsa-046602 Homo sapiens 41.84 1.00e-122 431.00
IUUC-Hvu-047431 Hordeum vulgare 26.67 3.00e-33 133.00
IUUC-Itr-047985 Ictidomys tridecemlineatus 47.60 5.00e-114 402.00
IUUC-Kpa-049318 Komagataella pastoris 42.15 7.00e-106 375.00
IUUC-Lch-049796 Latimeria chalumnae 38.07 1.00e-101 361.00
IUUC-Lpe-051153 Leersia perrieri 38.73 4.00e-102 363.00
IUUC-Loc-052467 Lepisosteus oculatus 42.01 5.00e-125 439.00
IUUC-Lma-053107 Leptosphaeria maculans 43.76 1.00e-114 404.00
IUUC-Laf-053787 Loxodonta africana 41.87 6.00e-126 442.00
IUUC-Mcc-055706 Macaca mulatta 42.02 2.00e-123 434.00
IUUC-Meu-056757 Macropus eugenii 50.00 1.00e-95 341.00
IUUC-Mor-057079 Magnaporthe oryzae 41.79 2.00e-121 427.00
IUUC-Mpo-057533 Magnaporthe poae 45.09 7.00e-113 398.00
IUUC-Mtr-057950 Medicago truncatula 48.55 2.00e-102 364.00
IUUC-Mla-058910 Melampsora laricipopulina 45.45 4.00e-110 390.00
IUUC-Mga-059366 Meleagris gallopavo 42.69 9.00e-124 434.00
IUUC-Mvi-060349 Microbotryum violaceum 45.57 8.00e-106 375.00
IUUC-Mmr-061209 Microcebus murinus 41.84 4.00e-125 439.00
IUUC-Mdo-062118 Monodelphis domestica 42.37 1.00e-125 441.00
IUUC-Mmu-063173 Mus musculus 42.52 1.00e-122 431.00
IUUC-Mac-065109 Musa acuminata 49.13 3.00e-103 367.00
IUUC-Mpu-066659 Mustela putorius furo 42.70 4.00e-123 432.00
IUUC-Mlu-067029 Myotis lucifugus 43.54 1.00e-123 434.00
IUUC-Nfi-068334 Neosartorya fischeri 43.20 7.00e-125 438.00
IUUC-Ncr-068675 Neurospora crassa 40.80 2.00e-108 384.00
IUUC-Nle-070113 Nomascus leucogenys 41.81 2.00e-124 437.00
IUUC-Opr-070685 Ochotona princeps 52.46 2.00e-114 404.00
IUUC-Ont-071680 Oreochromis niloticus 43.13 3.00e-124 436.00
IUUC-Oan-073573 Ornithorhynchus anatinus 42.91 1.00e-120 424.00
IUUC-Ocu-074074 Oryctolagus cuniculus 41.95 3.00e-125 439.00
IUUC-Oba-075625 Oryza barthii 48.54 2.00e-101 360.00
IUUC-Obr-076510 Oryza brachyantha 37.58 2.00e-103 367.00
IUUC-Ogl-077275 Oryza glaberrima 48.54 2.00e-101 360.00
IUUC-Ogu-078563 Oryza glumaepatula 48.54 2.00e-101 360.00
IUUC-Oin-079898 Oryza indica 48.10 3.00e-100 356.00
IUUC-Olo-081080 Oryza longistaminata 48.54 2.00e-101 360.00
IUUC-Ome-081794 Oryza meridionalis 29.88 2.00e-29 121.00
IUUC-Oni-083121 Oryza nivara 48.54 2.00e-101 360.00
IUUC-Opu-083329 Oryza punctata 48.54 2.00e-101 360.00
IUUC-Oru-084807 Oryza rufipogon 48.46 5.00e-88 316.00
IUUC-Osa-086039 Oryza sativa 48.69 4.00e-102 363.00
IUUC-Ola-087149 Oryzias latipes 42.94 3.00e-125 439.00
IUUC-Olu-087627 Ostreococcus lucimarinus 43.99 6.00e-88 315.00
IUUC-Oga-088359 Otolemur garnettii 42.52 2.00e-122 431.00
IUUC-Oar-089390 Ovis aries 42.70 1.00e-122 431.00
IUUC-Ptr-090894 Pan troglodytes 41.84 1.00e-122 431.00
IUUC-Pan-092476 Papio anubis 42.02 2.00e-123 434.00
IUUC-Psi-093527 Pelodiscus sinensis 41.49 8.00e-116 408.00
IUUC-Pno-094771 Phaeosphaeria nodorum 47.17 7.00e-113 398.00
IUUC-Ppa-095386 Physcomitrella patens 38.10 8.00e-106 375.00
IUUC-Pfo-096139 Poecilia formosa 41.59 7.00e-123 432.00
IUUC-Pab-097838 Pongo abelii 41.58 2.00e-108 384.00
IUUC-Pop-099962 Populus trichocarpa 37.24 3.00e-104 370.00
IUUC-Pca-100876 Procavia capensis 46.09 1.00e-93 335.00
IUUC-Ppe-101777 Prunus persica 48.83 1.00e-101 361.00
IUUC-Pva-102418 Pteropus vampyrus 42.02 5.00e-123 432.00
IUUC-Pgr-103456 Puccinia graminis 47.29 6.00e-115 405.00
IUUC-Ptt-103731 Puccinia triticina 35.71 1.00e-111 395.00
IUUC-Pte-104386 Pyrenophora teres 46.88 3.00e-110 389.00
IUUC-Pyt-104560 Pyrenophora triticirepentis 46.88 1.00e-110 390.00
IUUC-Rno-105694 Rattus norvegicus 40.89 2.00e-115 407.00
IUUC-Sce-106339 Saccharomyces cerevisiae 40.81 1.00e-83 301.00
IUUC-Sha-106709 Sarcophilus harrisii 42.34 3.00e-124 436.00
IUUC-Sja-107817 Schizosaccharomyces japonicus 59.41 0.00e+00 675.00
IUUC-Ssl-108530 Sclerotinia sclerotiorum 43.33 2.00e-114 404.00
IUUC-Smo-109326 Selaginella moellendorffii 36.33 7.00e-91 325.00
IUUC-Sit-110446 Setaria italica 48.98 2.00e-101 361.00
IUUC-Sly-111330 Solanum lycopersicum 49.42 2.00e-103 367.00
IUUC-Stu-112610 Solanum tuberosum 49.42 2.00e-103 367.00
IUUC-Sar-113065 Sorex araneus 38.62 4.00e-36 144.00
IUUC-Sbi-114005 Sorghum bicolor 49.27 8.00e-102 362.00
IUUC-Sre-114988 Sporisorium reilianum 42.19 2.00e-132 463.00
IUUC-Ssc-115760 Sus scrofa 42.20 5.00e-124 436.00
IUUC-Tgu-116493 Taeniopygia guttata 42.69 7.00e-126 442.00
IUUC-Tru-118489 Takifugu rubripes 39.69 1.00e-120 424.00
IUUC-Tsy-119332 Tarsius syrichta 41.67 5.00e-125 439.00
IUUC-Tni-120202 Tetraodon nigroviridis 39.73 2.00e-110 390.00
IUUC-Tca-121429 Theobroma cacao 47.97 3.00e-101 360.00
IUUC-Tre-122162 Trichoderma reesei 42.13 4.00e-122 429.00
IUUC-Tvi-122500 Trichoderma virens 42.03 3.00e-120 423.00
IUUC-Tae-125557 Triticum aestivum 48.10 5.00e-100 356.00
IUUC-Tur-126554 Triticum urartu 47.80 4.00e-98 349.00
IUUC-Tme-126919 Tuber melanosporum 43.27 3.00e-133 466.00
IUUC-Tbe-127968 Tupaia belangeri 39.33 1.00e-112 398.00
IUUC-Ttr-129215 Tursiops truncatus 41.61 3.00e-122 429.00
IUUC-Uma-129622 Ustilago maydis 42.03 1.00e-132 465.00
IUUC-Vda-129750 Verticillium dahliae 40.07 1.00e-121 427.00
IUUC-Vpa-130617 Vicugna pacos 42.42 3.00e-120 423.00
IUUC-Vvi-131505 Vitis vinifera 28.62 2.00e-36 144.00
IUUC-Xtr-131865 Xenopus tropicalis 42.50 6.00e-125 439.00
IUUC-Xma-133627 Xiphophorus maculatus 40.73 2.00e-122 430.00
IUUC-Yli-134390 Yarrowia lipolytica 45.45 4.00e-109 386.00
IUUC-Zma-134910 Zea mays 49.12 6.00e-101 359.00
Created Date 25-Jun-2017

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