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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Cel-018563
UUCD1 version UUC-CaE-00491
Ensembl Protein ID F10G8.3.1
UniProt Accession Q93454; RAE1_CAEEL
Genbank Protein ID CAB02280.1
Protein Name mRNA export factor rae-1; Nuclear pore complex protein 17; Nucleoporin-17
Genbank Nucleotide ID Z80216
Gene Name rae-1; npp-17; F10G8.3
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
WBGene00003803 F10G8.3.1 F10G8.3.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNAmiRNAMapRAID2
Protein-protein Interaction
IIDiRefIndex
Post-translational Modifications (PTMs)
dbPTM
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.30e-19 69.8 43 73
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 4    dsvtclaf....sd.tllvsGsdDgtikvWD 29
           d +  ++f    +d ++l++Gs+Dgti+vW 
   Q: 43   DTIQVIKFsptpQDkPMLACGSWDGTIRVWM 73
           566668889898789***************6 PP
   
Organism Caenorhabditis elegans
Functional Description
(View)

Functional Description


     Functions as a component of the nuclear pore complex (NPC) (PubMed:12937276). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors (By similarity). It is specifically important for nuclear mRNA export (PubMed:12937276). Has a role in neuronal development, where it acts downstream of rpm-1 to control axon termination and synapse formation in anterior lateral microtubule (ALM) and posterior lateral microtubule (PLM) mechanosensory neurons (PubMed:22357847).
 Functions as a component of the nuclear pore complex (NPC) (PubMed:12937276). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors (By similarity). It is specifically important for nuclear mRNA export (PubMed:12937276). Has a role in neuronal development, where it acts downstream of rpm-1 to control axon termination and synapse formation in anterior lateral microtubule (ALM) and posterior lateral microtubule (PLM) mechanosensory neurons (PubMed:22357847).
Protein Sequence
(Fasta)
MFGSSGFGNK SMFGGSNIST STTTPAANTT QNDDFLVDGA PEDTIQVIKF SPTPQDKPML 60
ACGSWDGTIR VWMFNDANTF EGKAQQNIPA PILDIAWIED SSKIFIACAD KEARLWDLAS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Cel-018563|E3,WD_repeat|Caenorhabditis elegans
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TCGAAATATT TCGAAATGAT TAATGAAGAA AGGTAGGCGT TATAATATTT ATAATCAAAA 60
TTTCTCAATA TCATGTTAGA TATTCATTTT TGGCGAATAT TCAACAATTG AAAATCAAAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Cel-018563|E3,WD_repeat|Caenorhabditis elegans
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0007--Acetylation
KW-0965--Cell junction
KW-0966--Cell projection
KW-0181--Complete proteome
KW-0903--Direct protein sequencing
KW-0509--mRNA transport
KW-0906--Nuclear pore complex
KW-0539--Nucleus
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0770--Synapse
KW-0811--Translocation
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030424--C:axon
GO:0030054--C:cell junction
GO:0005643--C:nuclear pore
GO:0045202--C:synapse
GO:0051028--P:mRNA transport
GO:0015031--P:protein transport
KEGG cel:CELE_F10G8.3
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000293 Aegilops tauschii 38.22 1.00e-59 222.00
IUUC-Aml-002179 Ailuropoda melanoleuca 52.63 5.00e-100 356.00
IUUC-Atr-002609 Amborella trichopoda 38.02 1.00e-60 225.00
IUUC-Apl-003637 Anas platyrhynchos 51.43 8.00e-98 348.00
IUUC-Aca-005042 Anolis carolinensis 52.34 7.00e-99 352.00
IUUC-Aly-006015 Arabidopsis lyrata 38.12 4.00e-64 236.00
IUUC-Ath-007659 Arabidopsis thaliana 38.53 6.00e-64 236.00
IUUC-Ago-008004 Ashbya gossypii 33.90 5.00e-58 216.00
IUUC-Acl-008030 Aspergillus clavatus 39.24 3.00e-65 240.00
IUUC-Afl-008636 Aspergillus flavus 39.53 2.00e-66 244.00
IUUC-Afu-009121 Aspergillus fumigatus 40.12 2.00e-67 247.00
IUUC-Ani-009238 Aspergillus nidulans 38.48 2.00e-64 238.00
IUUC-Ang-009801 Aspergillus niger 38.11 1.00e-68 252.00
IUUC-Aor-009974 Aspergillus oryzae 39.53 2.00e-66 244.00
IUUC-Ate-010406 Aspergillus terreus 39.83 4.00e-68 250.00
IUUC-Ame-011368 Astyanax mexicanus 52.34 5.00e-99 352.00
IUUC-Bgr-012233 Blumeria graminis 36.31 4.00e-57 213.00
IUUC-Bta-012856 Bos taurus 52.63 5.00e-100 356.00
IUUC-Bci-013964 Botrytis cinerea 38.15 8.00e-60 222.00
IUUC-Bdi-014049 Brachypodium distachyon 39.83 7.00e-66 242.00
IUUC-Bol-015367 Brassica oleracea 39.72 9.00e-65 239.00
IUUC-Bra-016903 Brassica rapa 39.72 9.00e-65 239.00
IUUC-Cja-019700 Callithrix jacchus 52.63 2.00e-100 357.00
IUUC-Cfa-020337 Canis familiaris 52.63 5.00e-100 356.00
IUUC-Cpo-021858 Cavia porcellus 52.63 1.00e-99 355.00
IUUC-Cre-022748 Chlamydomonas reinhardtii 42.82 6.00e-68 249.00
IUUC-Csa-023322 Chlorocebus sabaeus 52.63 2.00e-100 357.00
IUUC-Cho-024533 Choloepus hoffmanni 38.60 2.00e-57 214.00
IUUC-Cin-025393 Ciona intestinalis 50.41 3.00e-103 366.00
IUUC-Csv-026093 Ciona savignyi 49.59 3.00e-101 360.00
IUUC-Cgl-026503 Colletotrichum gloeosporioides 33.51 1.00e-45 175.00
IUUC-Cne-026774 Cryptococcus neoformans 34.73 1.00e-51 196.00
IUUC-Cme-027243 Cyanidioschyzon merolae 33.24 3.00e-55 207.00
IUUC-Dre-028159 Danio rerio 52.34 8.00e-99 352.00
IUUC-Dno-028852 Dasypus novemcinctus 52.63 5.00e-100 356.00
IUUC-Dor-030445 Dipodomys ordii 56.02 4.00e-54 203.00
IUUC-Dse-031161 Dothistroma septosporum 39.71 4.00e-57 213.00
IUUC-Dme-032009 Drosophila melanogaster 53.35 1.00e-106 378.00
IUUC-Eca-033306 Equus caballus 52.34 3.00e-99 353.00
IUUC-Fca-035579 Felis catus 52.63 5.00e-100 356.00
IUUC-Fal-037582 Ficedula albicollis 51.71 2.00e-98 351.00
IUUC-Fox-037772 Fusarium oxysporum 39.77 3.00e-69 254.00
IUUC-Fso-038368 Fusarium solani 39.18 2.00e-68 251.00
IUUC-Gmo-038500 Gadus morhua 51.75 9.00e-98 348.00
IUUC-Ggr-040019 Gaeumannomyces graminis 38.66 8.00e-67 245.00
IUUC-Gga-040684 Gallus gallus 51.71 4.00e-98 349.00
IUUC-Gac-042592 Gasterosteus aculeatus 52.92 1.00e-99 355.00
IUUC-Gma-043683 Glycine max 40.00 2.00e-63 234.00
IUUC-Ggo-044965 Gorilla gorilla 52.63 4.00e-100 356.00
IUUC-Hsa-046779 Homo sapiens 53.82 2.00e-95 341.00
IUUC-Hvu-047380 Hordeum vulgare 40.13 1.00e-62 231.00
IUUC-Itr-048819 Ictidomys tridecemlineatus 52.92 2.00e-100 358.00
IUUC-Kpa-049284 Komagataella pastoris 36.44 1.00e-60 225.00
IUUC-Lch-050559 Latimeria chalumnae 45.78 1.00e-85 308.00
IUUC-Lpe-051050 Leersia perrieri 39.17 6.00e-66 243.00
IUUC-Loc-052874 Lepisosteus oculatus 53.22 4.00e-101 359.00
IUUC-Lma-053085 Leptosphaeria maculans 34.41 1.00e-55 208.00
IUUC-Laf-053980 Loxodonta africana 52.34 1.00e-99 355.00
IUUC-Mcc-055408 Macaca mulatta 52.63 3.00e-100 357.00
IUUC-Meu-056551 Macropus eugenii 48.25 3.00e-87 313.00
IUUC-Mor-057248 Magnaporthe oryzae 37.16 2.00e-67 247.00
IUUC-Mpo-057390 Magnaporthe poae 39.50 2.00e-67 248.00
IUUC-Mtr-057675 Medicago truncatula 38.03 3.00e-63 234.00
IUUC-Mla-059155 Melampsora laricipopulina 37.50 2.00e-67 248.00
IUUC-Mga-060140 Meleagris gallopavo 54.07 1.00e-91 328.00
IUUC-Mvi-060264 Microbotryum violaceum 40.77 1.00e-71 262.00
IUUC-Mmr-061533 Microcebus murinus 52.63 1.00e-99 355.00
IUUC-Mdo-062593 Monodelphis domestica 52.34 2.00e-99 354.00
IUUC-Mmu-063362 Mus musculus 52.63 8.00e-100 355.00
IUUC-Mac-064622 Musa acuminata 38.77 1.00e-58 219.00
IUUC-Mpu-065722 Mustela putorius furo 52.63 6.00e-100 356.00
IUUC-Mlu-068124 Myotis lucifugus 52.34 1.00e-99 355.00
IUUC-Nfi-068595 Neosartorya fischeri 39.83 3.00e-67 247.00
IUUC-Ncr-068790 Neurospora crassa 39.17 7.00e-65 239.00
IUUC-Nle-069395 Nomascus leucogenys 43.27 4.00e-72 263.00
IUUC-Opr-070320 Ochotona princeps 49.42 3.00e-89 320.00
IUUC-Ont-071303 Oreochromis niloticus 52.63 9.00e-99 352.00
IUUC-Oan-073724 Ornithorhynchus anatinus 52.05 2.00e-98 351.00
IUUC-Ocu-074961 Oryctolagus cuniculus 53.31 3.00e-95 340.00
IUUC-Oba-075250 Oryza barthii 39.83 4.00e-65 239.00
IUUC-Obr-076805 Oryza brachyantha 39.09 4.00e-65 240.00
IUUC-Ogl-077767 Oryza glaberrima 39.17 6.00e-66 243.00
IUUC-Ogu-078760 Oryza glumaepatula 39.83 4.00e-65 239.00
IUUC-Oin-080219 Oryza indica 39.17 6.00e-66 243.00
IUUC-Olo-081007 Oryza longistaminata 39.17 6.00e-66 243.00
IUUC-Ome-081848 Oryza meridionalis 37.57 1.00e-62 231.00
IUUC-Oni-082844 Oryza nivara 39.17 6.00e-66 243.00
IUUC-Opu-083511 Oryza punctata 36.49 2.00e-60 224.00
IUUC-Oru-084270 Oryza rufipogon 39.54 2.00e-65 241.00
IUUC-Osa-085287 Oryza sativa 39.17 6.00e-66 243.00
IUUC-Ola-087292 Oryzias latipes 52.34 2.00e-99 354.00
IUUC-Olu-087689 Ostreococcus lucimarinus 39.94 1.00e-68 251.00
IUUC-Oga-088821 Otolemur garnettii 52.63 5.00e-100 356.00
IUUC-Oar-090253 Ovis aries 52.63 5.00e-100 356.00
IUUC-Ptr-091097 Pan troglodytes 52.05 7.00e-99 352.00
IUUC-Pan-091835 Papio anubis 52.63 2.00e-100 357.00
IUUC-Psi-093000 Pelodiscus sinensis 52.34 8.00e-99 352.00
IUUC-Pma-094273 Petromyzon marinus 51.73 2.00e-104 370.00
IUUC-Pno-094920 Phaeosphaeria nodorum 33.78 2.00e-48 184.00
IUUC-Ppa-095202 Physcomitrella patens 44.02 2.00e-53 200.00
IUUC-Pfo-096388 Poecilia formosa 52.34 1.00e-98 352.00
IUUC-Pab-097533 Pongo abelii 52.63 2.00e-100 357.00
IUUC-Pop-099958 Populus trichocarpa 40.72 2.00e-62 231.00
IUUC-Ppe-101915 Prunus persica 38.30 2.00e-62 231.00
IUUC-Pva-102233 Pteropus vampyrus 52.05 6.00e-99 352.00
IUUC-Pgr-103342 Puccinia graminis 37.40 3.00e-69 254.00
IUUC-Ptt-103836 Puccinia triticina 37.57 8.00e-70 256.00
IUUC-Pte-104387 Pyrenophora teres 35.48 5.00e-57 213.00
IUUC-Pyt-104737 Pyrenophora triticirepentis 34.68 3.00e-57 214.00
IUUC-Rno-105548 Rattus norvegicus 52.63 6.00e-100 356.00
IUUC-Sce-106379 Saccharomyces cerevisiae 34.93 3.00e-64 237.00
IUUC-Sha-107617 Sarcophilus harrisii 57.49 3.00e-78 283.00
IUUC-Sja-107668 Schizosaccharomyces japonicus 37.80 4.00e-64 237.00
IUUC-Spo-108293 Schizosaccharomyces pombe 36.89 8.00e-64 236.00
IUUC-Smo-109611 Selaginella moellendorffii 41.57 2.00e-70 257.00
IUUC-Sit-110521 Setaria italica 39.77 7.00e-67 246.00
IUUC-Sly-111037 Solanum lycopersicum 40.23 1.00e-69 254.00
IUUC-Sbi-113852 Sorghum bicolor 40.35 4.00e-68 250.00
IUUC-Sre-114922 Sporisorium reilianum 33.42 2.00e-53 201.00
IUUC-Ssc-116305 Sus scrofa 52.63 6.00e-100 356.00
IUUC-Tgu-116751 Taeniopygia guttata 51.71 2.00e-98 350.00
IUUC-Tru-117798 Takifugu rubripes 52.34 7.00e-98 348.00
IUUC-Tsy-119523 Tarsius syrichta 56.27 4.00e-89 319.00
IUUC-Tni-120477 Tetraodon nigroviridis 52.62 7.00e-97 345.00
IUUC-Tca-121802 Theobroma cacao 38.11 8.00e-61 226.00
IUUC-Tre-121994 Trichoderma reesei 37.26 6.00e-63 233.00
IUUC-Tvi-122631 Trichoderma virens 37.43 3.00e-60 223.00
IUUC-Tae-124794 Triticum aestivum 40.27 6.00e-63 233.00
IUUC-Tur-126390 Triticum urartu 38.78 2.00e-64 238.00
IUUC-Tme-127152 Tuber melanosporum 39.07 2.00e-64 238.00
IUUC-Tbe-127319 Tupaia belangeri 43.37 1.00e-52 198.00
IUUC-Ttr-129207 Tursiops truncatus 51.18 2.00e-97 347.00
IUUC-Uma-129342 Ustilago maydis 33.25 2.00e-48 184.00
IUUC-Vda-129865 Verticillium dahliae 39.07 4.00e-68 249.00
IUUC-Vpa-130076 Vicugna pacos 50.17 8.00e-79 285.00
IUUC-Vvi-131104 Vitis vinifera 38.89 2.00e-63 234.00
IUUC-Xtr-132917 Xenopus tropicalis 39.42 7.00e-59 219.00
IUUC-Xma-133615 Xiphophorus maculatus 52.34 1.00e-98 352.00
IUUC-Yli-134431 Yarrowia lipolytica 34.48 1.00e-55 208.00
IUUC-Zma-135142 Zea mays 38.59 4.00e-66 243.00
Created Date 25-Jun-2017

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