iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA	miRNAMap	RAID2
Protein-protein Interaction
IID	PINA
Post-translational Modifications (PTMs)
dbPAF	PHOSIDA
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.10e-20	72.3	330	368

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllks 38
           gHtd+v++ ++  s + ++sGs D tik WD+++ ++lks
   Q: 330  GHTDKVSSARLfqS-HNVISGSADRTIKNWDISSIRCLKS 368
           8********96654.679******************9986 PP

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MTDNRTSFRL EILNRLCKRE RQQRCVKDMF KNYSLLDEQL QQSHRSRSVS VNDEHFKGNV 60
NDRLAVMKEE MANVYRMKSK NDQDLIDANR KLADSESRYS LVSSQRDKLR IETDAIVKKM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGGATGACCG ACAATCGGAC TTCCTTTCGC TTGGAAATAC TGAATCGATT GTGCAAACGA 60
GAACGCCAGC AAAGATGTGT GAAAGACATG TTCAAAAATT ATTCGTTATT GGATGAACAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0072--Autophagy
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000421--C:autophagosome membrane
GO:0005737--C:cytoplasm
GO:0035973--P:aggrephagy
GO:0000045--P:autophagosome assembly
GO:0050830--P:defense response to Gram-positive bacterium

KEGG

cel:CELE_K06A1.5

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Cja-020002	Callithrix jacchus	32.32	5.00e-43	167.00
IUUC-Cho-024311	Choloepus hoffmanni	38.94	8.00e-42	163.00
IUUC-Cin-025260	Ciona intestinalis	28.39	4.00e-50	191.00
IUUC-Csv-025836	Ciona savignyi	36.36	2.00e-36	144.00
IUUC-Dor-030897	Dipodomys ordii	33.13	6.00e-50	191.00
IUUC-Dme-031595	Drosophila melanogaster	28.37	3.00e-56	211.00
IUUC-Ete-032969	Echinops telfairi	38.91	2.00e-56	211.00
IUUC-Gma-043452	Glycine max	27.10	8.00e-37	146.00
IUUC-Hvu-047655	Hordeum vulgare	26.82	3.00e-22	98.20
IUUC-Laf-053936	Loxodonta africana	37.95	5.00e-57	214.00
IUUC-Mtr-058062	Medicago truncatula	25.57	1.00e-31	129.00
IUUC-Opr-071039	Ochotona princeps	32.32	3.00e-46	178.00
IUUC-Oba-075619	Oryza barthii	25.23	3.00e-25	108.00
IUUC-Obr-076632	Oryza brachyantha	26.95	1.00e-25	109.00
IUUC-Ogl-077671	Oryza glaberrima	25.23	3.00e-25	108.00
IUUC-Ogu-078052	Oryza glumaepatula	25.00	7.00e-25	107.00
IUUC-Oin-079611	Oryza indica	25.83	7.00e-24	103.00
IUUC-Olo-080408	Oryza longistaminata	26.60	1.00e-24	106.00
IUUC-Ome-081560	Oryza meridionalis	25.00	5.00e-25	107.00
IUUC-Oni-082145	Oryza nivara	25.23	3.00e-25	108.00
IUUC-Opu-083918	Oryza punctata	26.34	4.00e-24	105.00
IUUC-Oru-084858	Oryza rufipogon	25.32	2.00e-23	102.00
IUUC-Osa-086277	Oryza sativa	25.83	5.00e-24	104.00
IUUC-Olu-087622	Ostreococcus lucimarinus	27.62	4.00e-36	144.00
IUUC-Pop-099116	Populus trichocarpa	24.94	2.00e-28	119.00
IUUC-Pca-100680	Procavia capensis	41.01	2.00e-45	176.00
IUUC-Ppe-101790	Prunus persica	24.85	5.00e-30	124.00
IUUC-Smo-109404	Selaginella moellendorffii	26.44	3.00e-37	148.00
IUUC-Sly-111009	Solanum lycopersicum	24.53	6.00e-33	134.00
IUUC-Stu-112370	Solanum tuberosum	25.46	3.00e-31	128.00
IUUC-Sar-113109	Sorex araneus	37.02	5.00e-31	127.00
IUUC-Sbi-114819	Sorghum bicolor	28.46	3.00e-27	115.00
IUUC-Vvi-130878	Vitis vinifera	25.56	4.00e-30	124.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence