iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007190

UUCD1 version

UUC-ArT-00951

Ensembl Protein ID

AT4G02440.1

UniProt Accession

Q8LEA8; O81289; Q0WMI9; EID1_ARATH

Genbank Protein ID

AAC19270.1; CAB80737.1; AEE82172.1; AAN72049.1; AAP42744.1; BAF01662.1; AAM62754.1

Protein Name

Phytochrome A-associated F-box protein; Empfindlicher im dunkelroten Licht protein 1

Genbank Nucleotide ID

AF069298; AL161494; CP002687; BT002038; BT008731; AK229833; AY085530

Gene Name

EID1; At4g02440; T14P8.22

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G02440	AT4G02440.1	AT4G02440.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 adaptor/Cullin RING/SCF/F-box	F-box	11316788

Classification

Family	E-value	Score	Start	End
E3 adaptor/Cullin RING/SCF/F-box	0.07	14.1	5	43

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/SCF/F-box

   S: 102  lldrlpeeilveilkll..dkeellraarvcrrwqelas 138
           +++ +pe+++++i+ +l  d+++  r+a+vc +++ + +
   Q: 5    VFSCIPEDVVFNIFFKLqdDPRNWARLACVCTKFSSIVR 43
           6788*************988999***********97776 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Negative regulator of the phyA signaling pathway that shifts the responsiveness of the phyA signaling system associated with hypocotyl elongation from red to far-red wavelength.

Protein Sequence
(Fasta)

MAESVFSCIP EDVVFNIFFK LQDDPRNWAR LACVCTKFSS IVRNVCCKTQ CYSAIPTVIS 60
DLLPLPPSAA ASASSSTAAD SSLTPPGGWA SLYKLAVCCP GLFHAGILLE NSDFGLEREL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TACGATGTCA TTTTCGAGAG CTGTTGCGCA TTACTTACTT GCCTTTGTGT GGGTGTTAGT 60
GAATCTGTGA CCCACCTTAA GAACAGTTAA GACTATTCCC GGTTTACGCG TACCGGACCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-0607--Phytochrome signaling pathway
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR001810--F-box_dom

Gene Ontology

GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0048366--P:leaf development
GO:0048573--P:photoperiodism, flowering
GO:0009585--P:red, far-red light phototransduction
GO:0010099--P:regulation of photomorphogenesis

KEGG

ath:AT4G02440

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003146	Amborella trichopoda	57.14	3.00e-66	244.00
IUUC-Aly-006192	Arabidopsis lyrata	90.36	5.00e-169	585.00
IUUC-Bdi-014111	Brachypodium distachyon	70.99	2.00e-48	185.00
IUUC-Bol-015332	Brassica oleracea	74.46	5.00e-96	343.00
IUUC-Bra-017993	Brassica rapa	65.07	4.00e-139	487.00
IUUC-Gac-041514	Gasterosteus aculeatus	30.77	4.10e-02	33.50
IUUC-Gma-044377	Glycine max	53.33	9.00e-89	319.00
IUUC-Hvu-047371	Hordeum vulgare	70.23	7.00e-54	203.00
IUUC-Lpe-051202	Leersia perrieri	66.67	6.00e-52	197.00
IUUC-Lma-053229	Leptosphaeria maculans	37.50	1.10e-01	26.90
IUUC-Mtr-057994	Medicago truncatula	46.57	5.00e-79	286.00
IUUC-Mac-065238	Musa acuminata	53.10	1.00e-90	325.00
IUUC-Oan-073525	Ornithorhynchus anatinus	33.96	4.80e-02	31.20
IUUC-Obr-076134	Oryza brachyantha	60.71	4.00e-28	114.00
IUUC-Ogu-078015	Oryza glumaepatula	68.18	3.00e-53	200.00
IUUC-Oin-079518	Oryza indica	64.86	5.00e-08	50.40
IUUC-Ome-081208	Oryza meridionalis	68.18	1.00e-52	199.00
IUUC-Oni-082680	Oryza nivara	68.94	2.00e-53	202.00
IUUC-Opu-084169	Oryza punctata	68.18	2.00e-53	201.00
IUUC-Oru-084629	Oryza rufipogon	68.94	2.00e-53	201.00
IUUC-Osa-085886	Oryza sativa	68.94	2.00e-53	201.00
IUUC-Ppa-095180	Physcomitrella patens	33.68	3.00e-49	188.00
IUUC-Pop-099458	Populus trichocarpa	61.24	1.00e-106	378.00
IUUC-Ppe-101460	Prunus persica	59.83	9.00e-118	415.00
IUUC-Smo-108886	Selaginella moellendorffii	59.18	2.00e-45	175.00
IUUC-Sit-110679	Setaria italica	65.69	4.00e-52	197.00
IUUC-Sly-111323	Solanum lycopersicum	58.24	9.00e-107	379.00
IUUC-Stu-112407	Solanum tuberosum	57.97	7.00e-101	359.00
IUUC-Sbi-113782	Sorghum bicolor	66.42	6.00e-54	204.00
IUUC-Tru-118670	Takifugu rubripes	30.77	7.30e-02	32.70
IUUC-Tca-121453	Theobroma cacao	60.69	3.00e-103	367.00
IUUC-Tae-123170	Triticum aestivum	70.99	1.00e-54	206.00
IUUC-Vvi-131404	Vitis vinifera	60.64	1.00e-115	409.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence