iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	2.20e-16	60.7	217	317

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 2    vrvkvsykgeirsfaldlekpgkfedLlkavrt.lt.........................elknsevalkYeDedGDlvtlksDedldkavsllask 73
           ++vkvs++g+++++++dl++++++ +L +a+++ +t                          l+++++ l+YeD+dGD++ l++D++++++++     
   Q: 217  LFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKmFTtftlgqcgsngaagkdmlsetklkdLLNGKDYVLTYEDKDGDWM-LVGDVPWEMFID----- 308
           58*******************************844688*********************99999***************.************..... PP
   S: 74   ksllrlliqk 83
             +++l i+k
   Q: 309  -VCKKLKIMK 317
           .688888876 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Protein Sequence
(Fasta)

MSPEEELQSN VSVASSSPTS NCISRNTLGG LKEHNYLGLS DCSSVGSSTL SPLAEDDKAT 60
ISLKATELTL GLPGSQSPAR DTELNLLSPA KLDEKPFFPL LPSKDEICSS SQKNNASGNK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TAGAATCGGA ATTTAATATT TGCAGACAAC CATCCCCTTT CGGGTGGAGC CAGAAAAGTG 60
GCATAATTTT GTTTAAAGAT CCGACTCCCG ACATTTGTAC ATCAACGGTT CATATCTGCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0043565--F:sequence-specific DNA binding
GO:0003700--F:transcription factor activity, sequence-specific DNA binding
GO:0009734--P:auxin-activated signaling pathway
GO:0009733--P:response to auxin
GO:0006351--P:transcription, DNA-templated

KEGG

ath:AT5G65670

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002452	Amborella trichopoda	50.00	9.00e-82	296.00
IUUC-Aly-005481	Arabidopsis lyrata	99.11	0.00e+00	627.00
IUUC-Bol-015732	Brassica oleracea	85.80	2.00e-151	527.00
IUUC-Bra-017890	Brassica rapa	73.46	6.00e-114	402.00
IUUC-Cel-018552	Caenorhabditis elegans	56.25	2.80e-01	27.30
IUUC-Gma-043823	Glycine max	65.43	1.00e-107	382.00
IUUC-Mtr-058323	Medicago truncatula	64.79	2.00e-109	388.00
IUUC-Mac-064563	Musa acuminata	50.97	6.00e-75	273.00
IUUC-Ome-081266	Oryza meridionalis	57.52	2.00e-48	184.00
IUUC-Opu-083799	Oryza punctata	62.68	1.00e-45	175.00
IUUC-Pop-099102	Populus trichocarpa	57.94	4.00e-98	350.00
IUUC-Ppe-101672	Prunus persica	60.53	4.00e-113	400.00
IUUC-Smo-109586	Selaginella moellendorffii	50.58	2.00e-41	162.00
IUUC-Sly-111221	Solanum lycopersicum	44.94	2.00e-60	224.00
IUUC-Stu-112219	Solanum tuberosum	59.36	5.00e-96	343.00
IUUC-Tca-121767	Theobroma cacao	65.05	3.00e-117	414.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence