iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlrtg 33
           gHt +++cl+f   s++ll+sGs D++ik+W++  +
   Q: 264  GHTKGISCLRFfpiSGHLLLSGSMDNQIKIWEVYHD 299
           8*********99*9989***************8655 PP

UBD/Beta-Prp

   S: 85   kcvhtlkghedsvlslsfsp.sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtlt 176
           k + t+kgh++ + +l+f+p sg+ l+sGs d+ i++w++ ++  l  t++gh + ++ +++++dg+ + s s D+t++lWd + gk+l  + 
   Q: 257  KHIFTWKGHTKGISCLRFFPiSGHLLLSGSMDNQIKIWEVYHDRSLLRTFQGHARPIRDLSFSQDGRSFLSTSFDKTIKLWDTELGKCLNCFN 349
           567789999999999999997779999999999999999999999888999999999999999999999999999999999999999999997 PP
   S: 177  gghtdsvysls..fdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnss 266
           +  ++  ++++  +d+++ +e+++g  d+++  +d+++ ++v+++  h   ++s+ f++n++r+v++s+D s r+W + +  ++k ++  + +
   Q: 350  S--DRLTNCVKfqVDPDKpNEFLAGTADKRILQFDIRSPDIVQAYDHHLGGINSITFLENGKRFVTTSDDSSMRFWEYGTPVPIKFVADIAMH 440
           6..455555551155555889999999999999999999999999999999999999999999999999999999999999999999999977 PP
   S: 267  visvavlsfgdnvlvlgsedskvniwkl 294
           +++  +l+++++ ++  s d+++ +++ 
   Q: 441  SMPRVALRPNGKSIACQSLDNCIYVYSA 468
           7777777999999998888999988876 PP

Organism

Schizosaccharomyces pombe

Functional Description
(View)

Functions in the second step of pre-mRNA splicing. Involved in splicing intron which are longer than 200 nucleotides.

Protein Sequence
(Fasta)

MLVANYSSDS EEQENSQSPN IQPLLHTENL APAVVDNVKD DLIVSKGGNS RELARNVPVN 60
EMVQPALGPA NPFVTKEQDS IKNSITGYAE REYVPNFVFN QEYYANTHAI YGKRNFDDNE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGTCCAAAAG CCCTTCGTTA AATTAGAAGC TAAATCTACT AAACCAATTC TTGAATTTGA 60
ATTGACAAAG CTTGCTTTTC AAAGCTTTCT TCAAGAAAAA GTTTAATCAA CAAAAACTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0507--mRNA processing
KW-0508--mRNA splicing
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0747--Spliceosome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR032847--PRPF17
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0005634--C:nucleus
GO:0071014--C:post-mRNA release spliceosomal complex
GO:0000974--C:Prp19 complex
GO:0005681--C:spliceosomal complex
GO:0045292--P:mRNA cis splicing, via spliceosome

KEGG

spo:SPBC6B1.10

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000473	Aegilops tauschii	48.25	3.00e-100	357.00
IUUC-Aml-002243	Ailuropoda melanoleuca	40.48	2.00e-82	297.00
IUUC-Atr-002502	Amborella trichopoda	50.58	1.00e-106	378.00
IUUC-Apl-003885	Anas platyrhynchos	42.64	4.00e-122	429.00
IUUC-Aca-004854	Anolis carolinensis	32.71	7.00e-71	259.00
IUUC-Aly-006158	Arabidopsis lyrata	49.13	2.00e-104	370.00
IUUC-Ath-007474	Arabidopsis thaliana	48.84	6.00e-104	369.00
IUUC-Ago-007726	Ashbya gossypii	37.50	3.00e-72	263.00
IUUC-Acl-008220	Aspergillus clavatus	42.94	2.00e-123	434.00
IUUC-Afl-008473	Aspergillus flavus	40.89	7.00e-121	425.00
IUUC-Afu-008773	Aspergillus fumigatus	43.23	3.00e-124	437.00
IUUC-Ani-009323	Aspergillus nidulans	41.00	3.00e-106	377.00
IUUC-Ang-009851	Aspergillus niger	42.02	6.00e-124	436.00
IUUC-Aor-009950	Aspergillus oryzae	40.89	7.00e-121	425.00
IUUC-Ate-010372	Aspergillus terreus	41.45	1.00e-124	437.00
IUUC-Ame-011660	Astyanax mexicanus	41.70	2.00e-123	434.00
IUUC-Bgr-012230	Blumeria graminis	44.77	6.00e-129	452.00
IUUC-Bta-012568	Bos taurus	42.70	4.00e-123	432.00
IUUC-Bci-013646	Botrytis cinerea	42.78	3.00e-126	442.00
IUUC-Bdi-014199	Brachypodium distachyon	48.40	3.00e-101	360.00
IUUC-Bol-015695	Brassica oleracea	37.74	8.00e-105	372.00
IUUC-Bra-017923	Brassica rapa	37.76	4.00e-108	383.00
IUUC-Cel-018535	Caenorhabditis elegans	35.76	1.00e-98	352.00
IUUC-Cja-019071	Callithrix jacchus	42.02	4.00e-123	432.00
IUUC-Cfa-020559	Canis familiaris	42.70	9.00e-123	432.00
IUUC-Cpo-022356	Cavia porcellus	41.84	6.00e-123	432.00
IUUC-Cre-022594	Chlamydomonas reinhardtii	35.26	9.00e-59	218.00
IUUC-Csa-023125	Chlorocebus sabaeus	42.02	2.00e-123	433.00
IUUC-Cho-024676	Choloepus hoffmanni	46.87	3.00e-117	413.00
IUUC-Cin-025229	Ciona intestinalis	41.15	4.00e-117	412.00
IUUC-Cgl-026739	Colletotrichum gloeosporioides	41.32	3.00e-109	386.00
IUUC-Cne-026885	Cryptococcus neoformans	39.66	2.00e-110	390.00
IUUC-Dre-027631	Danio rerio	41.63	1.00e-121	427.00
IUUC-Dno-029815	Dasypus novemcinctus	38.64	1.00e-114	404.00
IUUC-Dor-030978	Dipodomys ordii	46.46	5.00e-110	389.00
IUUC-Dse-031520	Dothistroma septosporum	43.15	3.00e-106	377.00
IUUC-Dme-032050	Drosophila melanogaster	40.83	2.00e-118	417.00
IUUC-Ete-032866	Echinops telfairi	41.61	5.00e-118	416.00
IUUC-Eca-033384	Equus caballus	42.02	6.00e-122	429.00
IUUC-Eeu-034471	Erinaceus europaeus	34.64	3.00e-84	303.00
IUUC-Fca-035727	Felis catus	42.70	3.00e-123	433.00
IUUC-Fal-036774	Ficedula albicollis	42.91	2.00e-124	437.00
IUUC-Fox-037951	Fusarium oxysporum	41.95	7.00e-124	435.00
IUUC-Fso-038287	Fusarium solani	42.21	3.00e-123	433.00
IUUC-Gmo-039670	Gadus morhua	41.03	6.00e-122	429.00
IUUC-Ggr-039764	Gaeumannomyces graminis	42.28	2.00e-121	427.00
IUUC-Gga-040293	Gallus gallus	42.69	7.00e-124	435.00
IUUC-Gac-042159	Gasterosteus aculeatus	40.78	1.00e-122	431.00
IUUC-Gma-044299	Glycine max	48.54	7.00e-101	358.00
IUUC-Ggo-044864	Gorilla gorilla	41.84	1.00e-122	431.00
IUUC-Hsa-046602	Homo sapiens	41.84	1.00e-122	431.00
IUUC-Hvu-047431	Hordeum vulgare	26.67	3.00e-33	133.00
IUUC-Itr-047985	Ictidomys tridecemlineatus	47.60	5.00e-114	402.00
IUUC-Kpa-049318	Komagataella pastoris	42.15	7.00e-106	375.00
IUUC-Lch-049796	Latimeria chalumnae	38.07	1.00e-101	361.00
IUUC-Lpe-051153	Leersia perrieri	38.73	4.00e-102	363.00
IUUC-Loc-052467	Lepisosteus oculatus	42.01	5.00e-125	439.00
IUUC-Lma-053107	Leptosphaeria maculans	43.76	1.00e-114	404.00
IUUC-Laf-053787	Loxodonta africana	41.87	6.00e-126	442.00
IUUC-Mcc-055706	Macaca mulatta	42.02	2.00e-123	434.00
IUUC-Meu-056757	Macropus eugenii	50.00	1.00e-95	341.00
IUUC-Mor-057079	Magnaporthe oryzae	41.79	2.00e-121	427.00
IUUC-Mpo-057533	Magnaporthe poae	45.09	7.00e-113	398.00
IUUC-Mtr-057950	Medicago truncatula	48.55	2.00e-102	364.00
IUUC-Mla-058910	Melampsora laricipopulina	45.45	4.00e-110	390.00
IUUC-Mga-059366	Meleagris gallopavo	42.69	9.00e-124	434.00
IUUC-Mvi-060349	Microbotryum violaceum	45.57	8.00e-106	375.00
IUUC-Mmr-061209	Microcebus murinus	41.84	4.00e-125	439.00
IUUC-Mdo-062118	Monodelphis domestica	42.37	1.00e-125	441.00
IUUC-Mmu-063173	Mus musculus	42.52	1.00e-122	431.00
IUUC-Mac-065109	Musa acuminata	49.13	3.00e-103	367.00
IUUC-Mpu-066659	Mustela putorius furo	42.70	4.00e-123	432.00
IUUC-Mlu-067029	Myotis lucifugus	43.54	1.00e-123	434.00
IUUC-Nfi-068334	Neosartorya fischeri	43.20	7.00e-125	438.00
IUUC-Ncr-068675	Neurospora crassa	40.80	2.00e-108	384.00
IUUC-Nle-070113	Nomascus leucogenys	41.81	2.00e-124	437.00
IUUC-Opr-070685	Ochotona princeps	52.46	2.00e-114	404.00
IUUC-Ont-071680	Oreochromis niloticus	43.13	3.00e-124	436.00
IUUC-Oan-073573	Ornithorhynchus anatinus	42.91	1.00e-120	424.00
IUUC-Ocu-074074	Oryctolagus cuniculus	41.95	3.00e-125	439.00
IUUC-Oba-075625	Oryza barthii	48.54	2.00e-101	360.00
IUUC-Obr-076510	Oryza brachyantha	37.58	2.00e-103	367.00
IUUC-Ogl-077275	Oryza glaberrima	48.54	2.00e-101	360.00
IUUC-Ogu-078563	Oryza glumaepatula	48.54	2.00e-101	360.00
IUUC-Oin-079898	Oryza indica	48.10	3.00e-100	356.00
IUUC-Olo-081080	Oryza longistaminata	48.54	2.00e-101	360.00
IUUC-Ome-081794	Oryza meridionalis	29.88	2.00e-29	121.00
IUUC-Oni-083121	Oryza nivara	48.54	2.00e-101	360.00
IUUC-Opu-083329	Oryza punctata	48.54	2.00e-101	360.00
IUUC-Oru-084807	Oryza rufipogon	48.46	5.00e-88	316.00
IUUC-Osa-086039	Oryza sativa	48.69	4.00e-102	363.00
IUUC-Ola-087149	Oryzias latipes	42.94	3.00e-125	439.00
IUUC-Olu-087627	Ostreococcus lucimarinus	43.99	6.00e-88	315.00
IUUC-Oga-088359	Otolemur garnettii	42.52	2.00e-122	431.00
IUUC-Oar-089390	Ovis aries	42.70	1.00e-122	431.00
IUUC-Ptr-090894	Pan troglodytes	41.84	1.00e-122	431.00
IUUC-Pan-092476	Papio anubis	42.02	2.00e-123	434.00
IUUC-Psi-093527	Pelodiscus sinensis	41.49	8.00e-116	408.00
IUUC-Pno-094771	Phaeosphaeria nodorum	47.17	7.00e-113	398.00
IUUC-Ppa-095386	Physcomitrella patens	38.10	8.00e-106	375.00
IUUC-Pfo-096139	Poecilia formosa	41.59	7.00e-123	432.00
IUUC-Pab-097838	Pongo abelii	41.58	2.00e-108	384.00
IUUC-Pop-099962	Populus trichocarpa	37.24	3.00e-104	370.00
IUUC-Pca-100876	Procavia capensis	46.09	1.00e-93	335.00
IUUC-Ppe-101777	Prunus persica	48.83	1.00e-101	361.00
IUUC-Pva-102418	Pteropus vampyrus	42.02	5.00e-123	432.00
IUUC-Pgr-103456	Puccinia graminis	47.29	6.00e-115	405.00
IUUC-Ptt-103731	Puccinia triticina	35.71	1.00e-111	395.00
IUUC-Pte-104386	Pyrenophora teres	46.88	3.00e-110	389.00
IUUC-Pyt-104560	Pyrenophora triticirepentis	46.88	1.00e-110	390.00
IUUC-Rno-105694	Rattus norvegicus	40.89	2.00e-115	407.00
IUUC-Sce-106339	Saccharomyces cerevisiae	40.81	1.00e-83	301.00
IUUC-Sha-106709	Sarcophilus harrisii	42.34	3.00e-124	436.00
IUUC-Sja-107817	Schizosaccharomyces japonicus	59.41	0.00e+00	675.00
IUUC-Ssl-108530	Sclerotinia sclerotiorum	43.33	2.00e-114	404.00
IUUC-Smo-109326	Selaginella moellendorffii	36.33	7.00e-91	325.00
IUUC-Sit-110446	Setaria italica	48.98	2.00e-101	361.00
IUUC-Sly-111330	Solanum lycopersicum	49.42	2.00e-103	367.00
IUUC-Stu-112610	Solanum tuberosum	49.42	2.00e-103	367.00
IUUC-Sar-113065	Sorex araneus	38.62	4.00e-36	144.00
IUUC-Sbi-114005	Sorghum bicolor	49.27	8.00e-102	362.00
IUUC-Sre-114988	Sporisorium reilianum	42.19	2.00e-132	463.00
IUUC-Ssc-115760	Sus scrofa	42.20	5.00e-124	436.00
IUUC-Tgu-116493	Taeniopygia guttata	42.69	7.00e-126	442.00
IUUC-Tru-118489	Takifugu rubripes	39.69	1.00e-120	424.00
IUUC-Tsy-119332	Tarsius syrichta	41.67	5.00e-125	439.00
IUUC-Tni-120202	Tetraodon nigroviridis	39.73	2.00e-110	390.00
IUUC-Tca-121429	Theobroma cacao	47.97	3.00e-101	360.00
IUUC-Tre-122162	Trichoderma reesei	42.13	4.00e-122	429.00
IUUC-Tvi-122500	Trichoderma virens	42.03	3.00e-120	423.00
IUUC-Tae-125557	Triticum aestivum	48.10	5.00e-100	356.00
IUUC-Tur-126554	Triticum urartu	47.80	4.00e-98	349.00
IUUC-Tme-126919	Tuber melanosporum	43.27	3.00e-133	466.00
IUUC-Tbe-127968	Tupaia belangeri	39.33	1.00e-112	398.00
IUUC-Ttr-129215	Tursiops truncatus	41.61	3.00e-122	429.00
IUUC-Uma-129622	Ustilago maydis	42.03	1.00e-132	465.00
IUUC-Vda-129750	Verticillium dahliae	40.07	1.00e-121	427.00
IUUC-Vpa-130617	Vicugna pacos	42.42	3.00e-120	423.00
IUUC-Vvi-131505	Vitis vinifera	28.62	2.00e-36	144.00
IUUC-Xtr-131865	Xenopus tropicalis	42.50	6.00e-125	439.00
IUUC-Xma-133627	Xiphophorus maculatus	40.73	2.00e-122	430.00
IUUC-Yli-134390	Yarrowia lipolytica	45.45	4.00e-109	386.00
IUUC-Zma-134910	Zea mays	49.12	6.00e-101	359.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence