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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-007169
UUCD1 version UUC-ArT-00524
Ensembl Protein ID AT1G56250.1
UniProt Accession Q9C7K0; VBF_ARATH
Genbank Protein ID AAG50907.1; AEE33369.1; AAQ62432.1; BAD43440.1
Protein Name F-box protein VBF; Protein PHLOEM PROTEIN 2-LIKE B14; VIP1-binding F-box protein
Genbank Nucleotide ID AC069159; CP002684; BT010431; AK175677
Gene Name VBF; PP2B14; At1g56250; F14G9.14
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G56250 AT1G56250.1 AT1G56250.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndexPINAHINT
Protein Expression/Proteomics
Status Reviewed
Details
Family Domain References (PMIDs)
E3 adaptor/Cullin RING/SCF/F-box F-box 23248273
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     Component of SCF(VBF) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins such as VIP1 and Agrobacterium virE2, after their implication in T-DNA translocation to the host nucleus (can functionally replace Agrobacterium VirF). Required during Agrobacterium-induced tumor formation.
Component of SCF(VBF) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins such as VIP1 and Agrobacterium virE2, after their implication in T-DNA translocation to the host nucleus (can functionally replace Agrobacterium VirF). Required during Agrobacterium-induced tumor formation.
Protein Sequence
(Fasta)
MMMLPEACIA NILAFTSPAD AFSSSEVSSV FRLAGDSDFV WEKFLPSDYK SLISQSTDHH 60
WNISSKKEIY RCLCDSLLID NARKLFKINK FSGKISYVLS ARDISITHSD HASYWSWSNV 120
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Protein Fasta Sequence



>IUUC-Ath-007169|E3,F-box|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
CAGAAATATG CCCAAGCATC ACTATATATT CTCACCATCT CTATCTCCAA GCATACTTCA 60
TCTATCATAG CTACAAAAAA TCAAAGCATC ATATTTACTC ACAAAACGAA ATTCTTCAAA 120
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Nucleotide Fasta Sequence



>IUUC-Ath-007169|E3,F-box|Arabidopsis thaliana
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Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0192--Crown gall tumor
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR001810--F-box_dom
IPR025886--PP2-like

PROSITE

PS50181--FBOX

Pfam

PF14299--PP2

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0030246--F:carbohydrate binding

KEGG ath:AT1G56250
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Bra-016946 Brassica rapa 82.56 1.00e-130 458.00
IUUC-Cel-018268 Caenorhabditis elegans 51.61 8.00e-02 32.70
IUUC-Lpe-050723 Leersia perrieri 35.34 4.00e-30 125.00
IUUC-Mtr-057681 Medicago truncatula 37.41 2.00e-32 132.00
IUUC-Ogu-078061 Oryza glumaepatula 35.79 7.00e-35 143.00
IUUC-Ome-081894 Oryza meridionalis 38.31 9.00e-31 128.00
IUUC-Oni-083091 Oryza nivara 35.79 5.00e-35 143.00
IUUC-Oru-085096 Oryza rufipogon 35.79 5.00e-35 143.00
Created Date 25-Jun-2017

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