iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Zma-134941

Ensembl Protein ID

Zm00001d035752_T001

UniProt Accession

B4FRD9; B4FRD9_MAIZE

Genbank Protein ID

ACF84682.1; ACG32155.1; AQK79615.1

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Genbank Nucleotide ID

BT039677; EU960037; CM000782

Gene Name

ZEAMMB73_Zm00001d035752

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d035752	Zm00001d035752_T001	Zm00001d035752_T001
Zm00001d035752	Zm00001d035752_T002	Zm00001d035752_T002

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	38.78	3.00e-43	172.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Zea mays

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MATSPALLFP SPSSASSAPS SARVEAVVLF NVCDSYVRRP DQADRVIGTL LGSLLSDGTV 60
HVRNSYVVPH SESADQVAID IDYHHNMYAS HQKVNPKEVI VGWFSTGFGV SGGSTLIHEF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTAGCCCGCT ACCCCTGCCC CTTCTCTCTT CGTCGCGCCT CCGCCTCCGC CGTCGTAGCA 60
TCCTCCTCCG CCACCTCGGC CATGGCGACA TCCCCAGCGC TCCTCTTCCC TTCTCCCTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0003743--F:translation initiation factor activity
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation

KEGG

zma:100272886

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	77.02	4.00e-122	430.00
IUUC-Aml-001527	Ailuropoda melanoleuca	38.78	4.00e-55	207.00
IUUC-Atr-002686	Amborella trichopoda	70.57	4.00e-102	363.00
IUUC-Apl-003977	Anas platyrhynchos	38.01	1.00e-46	178.00
IUUC-Aca-004335	Anolis carolinensis	39.54	2.00e-57	215.00
IUUC-Aly-005945	Arabidopsis lyrata	71.70	8.00e-109	385.00
IUUC-Ath-007045	Arabidopsis thaliana	70.19	3.00e-106	377.00
IUUC-Acl-008365	Aspergillus clavatus	33.94	4.00e-43	167.00
IUUC-Afl-008742	Aspergillus flavus	34.56	1.00e-41	163.00
IUUC-Afu-009030	Aspergillus fumigatus	33.94	2.00e-43	169.00
IUUC-Ani-009212	Aspergillus nidulans	33.94	1.00e-42	166.00
IUUC-Ang-009712	Aspergillus niger	34.30	9.00e-43	167.00
IUUC-Aor-009885	Aspergillus oryzae	34.93	5.00e-43	167.00
IUUC-Ate-010315	Aspergillus terreus	33.94	2.00e-41	162.00
IUUC-Ame-010801	Astyanax mexicanus	49.40	9.00e-20	90.10
IUUC-Bgr-011982	Blumeria graminis	34.80	9.00e-42	163.00
IUUC-Bta-012804	Bos taurus	38.78	4.00e-55	207.00
IUUC-Bci-013891	Botrytis cinerea	33.21	2.00e-35	142.00
IUUC-Bdi-014328	Brachypodium distachyon	83.77	1.00e-122	431.00
IUUC-Bol-015446	Brassica oleracea	70.94	2.00e-109	387.00
IUUC-Bra-016862	Brassica rapa	70.19	5.00e-108	383.00
IUUC-Cel-018171	Caenorhabditis elegans	26.41	6.00e-25	107.00
IUUC-Cja-019335	Callithrix jacchus	38.78	4.00e-55	207.00
IUUC-Cfa-020138	Canis familiaris	38.40	1.00e-54	206.00
IUUC-Cpo-022109	Cavia porcellus	35.56	4.00e-45	174.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	43.01	2.00e-63	235.00
IUUC-Csa-023994	Chlorocebus sabaeus	38.78	4.00e-55	207.00
IUUC-Cho-024351	Choloepus hoffmanni	29.66	1.00e-31	129.00
IUUC-Cin-025801	Ciona intestinalis	37.88	1.00e-52	199.00
IUUC-Csv-025805	Ciona savignyi	38.26	1.00e-52	199.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	29.96	2.00e-34	138.00
IUUC-Cne-026868	Cryptococcus neoformans	30.31	7.00e-24	103.00
IUUC-Cme-027328	Cyanidioschyzon merolae	26.10	4.00e-19	88.20
IUUC-Dre-028085	Danio rerio	40.75	1.00e-56	212.00
IUUC-Dno-030099	Dasypus novemcinctus	38.78	5.00e-55	207.00
IUUC-Dor-030324	Dipodomys ordii	34.98	7.00e-46	177.00
IUUC-Dse-031314	Dothistroma septosporum	35.04	1.00e-44	172.00
IUUC-Dme-031926	Drosophila melanogaster	39.70	3.00e-53	201.00
IUUC-Ete-032569	Echinops telfairi	38.55	4.00e-51	194.00
IUUC-Eca-033502	Equus caballus	36.88	5.00e-50	191.00
IUUC-Eeu-034883	Erinaceus europaeus	31.87	2.00e-25	108.00
IUUC-Fca-035873	Felis catus	38.78	4.00e-55	207.00
IUUC-Fal-036921	Ficedula albicollis	39.92	6.00e-57	213.00
IUUC-Fox-037765	Fusarium oxysporum	29.60	1.00e-27	116.00
IUUC-Fso-038240	Fusarium solani	29.96	8.00e-29	120.00
IUUC-Gmo-038864	Gadus morhua	40.38	2.00e-57	215.00
IUUC-Ggr-039862	Gaeumannomyces graminis	28.52	3.00e-29	122.00
IUUC-Gga-040952	Gallus gallus	39.92	7.00e-57	213.00
IUUC-Gac-041677	Gasterosteus aculeatus	41.13	1.00e-60	225.00
IUUC-Gma-043061	Glycine max	73.96	1.00e-104	372.00
IUUC-Ggo-045591	Gorilla gorilla	38.78	4.00e-55	207.00
IUUC-Hsa-046860	Homo sapiens	38.78	4.00e-55	207.00
IUUC-Hvu-047410	Hordeum vulgare	85.81	1.00e-72	264.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	39.16	1.00e-55	209.00
IUUC-Lch-049410	Latimeria chalumnae	36.45	1.00e-36	145.00
IUUC-Lpe-051102	Leersia perrieri	87.98	5.00e-127	446.00
IUUC-Loc-052016	Lepisosteus oculatus	37.74	3.00e-47	181.00
IUUC-Lma-053157	Leptosphaeria maculans	33.94	6.00e-45	174.00
IUUC-Laf-054568	Loxodonta africana	38.78	8.00e-55	207.00
IUUC-Mcc-054613	Macaca mulatta	38.78	4.00e-55	207.00
IUUC-Meu-056832	Macropus eugenii	23.44	2.00e-16	78.60
IUUC-Mor-057104	Magnaporthe oryzae	28.88	6.00e-30	124.00
IUUC-Mtr-058445	Medicago truncatula	73.58	1.00e-120	424.00
IUUC-Mla-059038	Melampsora laricipopulina	31.23	2.00e-34	139.00
IUUC-Mga-059548	Meleagris gallopavo	38.77	4.00e-49	187.00
IUUC-Mvi-060520	Microbotryum violaceum	24.92	2.00e-19	89.00
IUUC-Mdo-062376	Monodelphis domestica	39.25	9.00e-56	209.00
IUUC-Mmu-063254	Mus musculus	39.16	5.00e-56	211.00
IUUC-Mac-065635	Musa acuminata	71.58	5.00e-110	389.00
IUUC-Mpu-066314	Mustela putorius furo	38.78	3.00e-55	207.00
IUUC-Mlu-067512	Myotis lucifugus	39.16	6.00e-56	210.00
IUUC-Nfi-068262	Neosartorya fischeri	33.94	2.00e-43	169.00
IUUC-Ncr-068872	Neurospora crassa	29.14	8.00e-31	127.00
IUUC-Nle-070118	Nomascus leucogenys	38.78	4.00e-55	207.00
IUUC-Opr-071228	Ochotona princeps	37.44	1.00e-47	182.00
IUUC-Ont-072600	Oreochromis niloticus	40.00	2.00e-59	221.00
IUUC-Oan-073584	Ornithorhynchus anatinus	37.89	2.00e-48	184.00
IUUC-Ocu-074542	Oryctolagus cuniculus	38.78	1.00e-55	209.00
IUUC-Oba-075923	Oryza barthii	85.66	2.00e-130	457.00
IUUC-Obr-076313	Oryza brachyantha	88.76	2.00e-126	444.00
IUUC-Ogl-076932	Oryza glaberrima	85.66	2.00e-130	457.00
IUUC-Ogu-078152	Oryza glumaepatula	85.66	2.00e-130	457.00
IUUC-Oin-079528	Oryza indica	85.66	2.00e-130	457.00
IUUC-Olo-080401	Oryza longistaminata	85.66	2.00e-130	457.00
IUUC-Ome-081553	Oryza meridionalis	85.66	2.00e-130	457.00
IUUC-Oni-082090	Oryza nivara	85.66	2.00e-130	457.00
IUUC-Opu-083583	Oryza punctata	89.15	7.00e-127	445.00
IUUC-Oru-084492	Oryza rufipogon	85.66	2.00e-130	457.00
IUUC-Osa-085383	Oryza sativa	85.66	2.00e-130	457.00
IUUC-Ola-086835	Oryzias latipes	40.75	2.00e-59	221.00
IUUC-Olu-087716	Ostreococcus lucimarinus	36.67	2.00e-43	168.00
IUUC-Oga-088886	Otolemur garnettii	38.40	4.00e-55	207.00
IUUC-Oar-090079	Ovis aries	38.78	3.00e-55	208.00
IUUC-Ptr-091457	Pan troglodytes	38.78	4.00e-55	207.00
IUUC-Pan-092317	Papio anubis	34.07	1.00e-30	125.00
IUUC-Psi-093129	Pelodiscus sinensis	36.86	4.00e-50	191.00
IUUC-Pma-094488	Petromyzon marinus	41.44	6.00e-61	226.00
IUUC-Pno-095049	Phaeosphaeria nodorum	34.31	4.00e-46	177.00
IUUC-Ppa-095341	Physcomitrella patens	59.25	8.00e-101	359.00
IUUC-Pfo-096286	Poecilia formosa	40.00	7.00e-59	219.00
IUUC-Pab-097765	Pongo abelii	38.78	4.00e-55	207.00
IUUC-Pop-099131	Populus trichocarpa	73.58	2.00e-114	404.00
IUUC-Pca-100524	Procavia capensis	31.42	6.00e-32	130.00
IUUC-Ppe-101934	Prunus persica	75.09	3.00e-123	434.00
IUUC-Pva-102577	Pteropus vampyrus	39.16	1.00e-55	209.00
IUUC-Pgr-103521	Puccinia graminis	30.03	8.00e-34	137.00
IUUC-Pte-104304	Pyrenophora teres	34.31	4.00e-46	177.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	34.31	9.00e-46	176.00
IUUC-Rno-105717	Rattus norvegicus	39.16	6.00e-56	210.00
IUUC-Sha-107190	Sarcophilus harrisii	38.61	8.00e-55	206.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	33.70	4.00e-41	160.00
IUUC-Spo-108355	Schizosaccharomyces pombe	32.49	4.00e-40	157.00
IUUC-Smo-109374	Selaginella moellendorffii	62.26	1.00e-104	371.00
IUUC-Sit-110119	Setaria italica	95.09	2.00e-137	481.00
IUUC-Sly-111570	Solanum lycopersicum	74.34	8.00e-103	365.00
IUUC-Stu-112308	Solanum tuberosum	72.45	2.00e-110	391.00
IUUC-Sar-113515	Sorex araneus	35.79	2.00e-14	71.60
IUUC-Sbi-114605	Sorghum bicolor	95.45	2.00e-139	488.00
IUUC-Sre-114906	Sporisorium reilianum	35.58	7.00e-43	166.00
IUUC-Tgu-117087	Taeniopygia guttata	38.33	8.00e-49	186.00
IUUC-Tru-117700	Takifugu rubripes	41.13	5.00e-61	227.00
IUUC-Tni-120470	Tetraodon nigroviridis	40.38	4.00e-59	220.00
IUUC-Tca-121109	Theobroma cacao	74.72	2.00e-106	377.00
IUUC-Tre-122095	Trichoderma reesei	30.11	3.00e-29	122.00
IUUC-Tvi-122580	Trichoderma virens	29.75	2.00e-28	119.00
IUUC-Tae-125129	Triticum aestivum	85.16	5.00e-129	452.00
IUUC-Tur-126658	Triticum urartu	75.74	7.00e-117	412.00
IUUC-Tme-127043	Tuber melanosporum	35.16	2.00e-44	172.00
IUUC-Tbe-127927	Tupaia belangeri	38.78	4.00e-55	207.00
IUUC-Ttr-129231	Tursiops truncatus	38.78	2.00e-55	208.00
IUUC-Uma-129578	Ustilago maydis	35.58	6.00e-42	163.00
IUUC-Vda-129730	Verticillium dahliae	30.69	3.00e-34	138.00
IUUC-Vpa-130677	Vicugna pacos	55.17	1.00e-02	33.90
IUUC-Vvi-130968	Vitis vinifera	74.24	3.00e-113	400.00
IUUC-Xtr-132203	Xenopus tropicalis	39.16	6.00e-54	203.00
IUUC-Xma-133972	Xiphophorus maculatus	40.00	9.00e-59	219.00
IUUC-Yli-134553	Yarrowia lipolytica	32.10	1.00e-34	139.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence