iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007243

Ensembl Protein ID

AT4G21980.2

UniProt Accession

Q8LEM4; O65447; Q8S928; ATG8A_ARATH

Genbank Protein ID

AAM70188.1; BAB88387.1; CAA18101.1; CAB79153.1; AEE84537.1; AAN72035.1; AAP21330.1; AAM62580.1

Protein Name

Autophagy-related protein 8a; Autophagy-related ubiquitin-like modifier ATG8a

Genbank Nucleotide ID

AF492759; AB073175; AL022140; AL161556; CP002687; BT002024; BT006522; AY085349

Gene Name

ATG8A; APG8A; At4g21980; F1N20.80

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G21980	AT4G21980.2	AT4G21980.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
PINA	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/ATG8	2.00e-47	160.5	30	132

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/ATG8

   S: 2    rkeevekirdkfpdkiPvivekakkekipeldkkkylvPsdltvgqlvkiirkrlqlraedalfllvnnslvsvsatlaeiyeeekdedgflyvayas 99
           r++e+++ir+k+pd+iPviveka ++++p++dkkkylvP+dltvgq+v+++rkr++l ae+a+f++v n+l++++a +++iyee+kdedgfly++y++
   Q: 30   RMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSG 127
           889*********************************************************************************************** PP
   S: 100  eetfG 104
           e+tfG
   Q: 128  ENTFG 132
           ****9 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton.

Protein Sequence
(Fasta)

MIFACLKFAE TNRIAMAKSS FKISNPLEAR MSESSRIREK YPDRIPVIVE KAGQSDVPDI 60
DKKKYLVPAD LTVGQFVYVV RKRIKLGAEK AIFVFVKNTL PPTAALMSAI YEEHKDEDGF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTAGGAAAA CCCTAACTAA ATTCCATTAT TAATTTCTTT TATAATCCCT TTCTCTTGAC 60
ATTGACTTCT CTCTCTCGAT TCTTCTTCTC CAGTTTCAAT CAAACTCAAT TTCTTCTCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0072--Autophagy
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0206--Cytoskeleton
KW-0449--Lipoprotein
KW-0472--Membrane
KW-0493--Microtubule
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0833--Ubl conjugation pathway
KW-0926--Vacuole

Interpro

IPR004241--Atg8-like
IPR029071--Ubiquitin-rel_dom

Pfam

PF02991--Atg8

Gene Ontology

GO:0000421--C:autophagosome membrane
GO:0031410--C:cytoplasmic vesicle
GO:0005874--C:microtubule
GO:0006914--P:autophagy
GO:0015031--P:protein transport

KEGG

ath:AT4G21980

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006037	Arabidopsis lyrata	97.81	5.00e-76	275.00
IUUC-Bol-016295	Brassica oleracea	94.21	2.00e-65	239.00
IUUC-Bra-017293	Brassica rapa	94.21	1.00e-65	239.00
IUUC-Eeu-035131	Erinaceus europaeus	58.14	6.00e-28	114.00
IUUC-Gma-043147	Glycine max	81.06	6.00e-60	221.00
IUUC-Mac-065485	Musa acuminata	87.29	4.00e-53	198.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence