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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Sce-106146
UUCD1 version UUC-SaC-00034
Ensembl Protein ID YJL047C
UniProt Accession P47050; D6VWD7; CUL8_YEAST
Genbank Protein ID AAQ91376.1; CAA89338.1; DAA08753.1
Protein Name Cullin-8; Cullin-C; Regulator of Ty1 transposition protein 101
Genbank Nucleotide ID AY387707; Z49322; BK006943
Gene Name RTT101; CUL8; YJL047C; J1166
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
YJL047C YJL047C YJL047C
Annotation
mRNA Expression
GEOFFGED
Protein-protein Interaction
IIDiRefIndexHINTMentha
Post-translational Modifications (PTMs)
dbPAFBioGRID
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
E3 adaptor/Cullin RING/Cullin Cullin_N_terminal 20634314; 18704118
Organism Saccharomyces cerevisiae
Functional Description
(View)

Functional Description



     Core component of multiple cullin-RING-based E3 ubiquitin-protein ligase complexes (CRLs), which mediate the ubiquitination of target proteins. As a scaffold protein may contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. The CRL associates with CDC34 as the E2 ubiquitin-conjugating enzyme. The functional specificity of the CRL depends on the type of the associated substrate receptor protein. RTT101(MMS1-MMS22) promotes fork progression through damaged DNA or natural pause sites by stabilizing replication proteins like the replication fork-pausing complex (FPC) and leading-strand polymerase at stalled replication forks. RTT101(MMS1-MMS22) ubiquitinates the acetylated histones H3K56ac-H4 at lysine residues H3K121, H3K122 and H3K125. Ubiquitination is required for efficient histone deposition during replication-coupled nucleosome assembly, probably by facilitating the transfer of H3-H4 from ASF1 to other chaperones involved in histone deposition. RTT101(MMS1-CRT10) may regulate nucleotide synthesis through transcriptional regulation of ribonucleotide reductase. RTT101(MMS1) is also involved in the non-functional rRNA decay (NRD) of 25S rRNA through the selective, ubiquitination-dependent degradation of nonfunctional ribosomal particles. Ubiquitinates the FACT (facilitiates chromatin transcription) complex subunit SPT16 in an MMS1-independent manner. Involved in regulation of Ty1 transposition and protects the genome from Ty1 integration upstream of tRNA genes.
Core component of multiple cullin-RING-based E3 ubiquitin-protein ligase complexes (CRLs), which mediate the ubiquitination of target proteins. As a scaffold protein may contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. The CRL associates with CDC34 as the E2 ubiquitin-conjugating enzyme. The functional specificity of the CRL depends on the type of the associated substrate receptor protein. RTT101(MMS1-MMS22) promotes fork progression through damaged DNA or natural pause sites by stabilizing replication proteins like the replication fork-pausing complex (FPC) and leading-strand polymerase at stalled replication forks. RTT101(MMS1-MMS22) ubiquitinates the acetylated histones H3K56ac-H4 at lysine residues H3K121, H3K122 and H3K125. Ubiquitination is required for efficient histone deposition during replication-coupled nucleosome assembly, probably by facilitating the transfer of H3-H4 from ASF1 to other chaperones involved in histone deposition. RTT101(MMS1-CRT10) may regulate nucleotide synthesis through transcriptional regulation of ribonucleotide reductase. RTT101(MMS1) is also involved in the non-functional rRNA decay (NRD) of 25S rRNA through the selective, ubiquitination-dependent degradation of nonfunctional ribosomal particles. Ubiquitinates the FACT (facilitiates chromatin transcription) complex subunit SPT16 in an MMS1-independent manner. Involved in regulation of Ty1 transposition and protects the genome from Ty1 integration upstream of tRNA genes.
Protein Sequence
(Fasta)
MINESVSKRE GFHESISRET SASNALGLYN KFNDERNPRY RTMIAELHEF FHLTLAETIT 60
ETDVKELECN KEKAAKFRKL MPKMLNNCRE LTQRKSYIPY NSEFNGNDEK QKKFQLLHQH 120
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Protein Fasta Sequence



>IUUC-Sce-106146|E3,Cullin|Saccharomyces cerevisiae
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Nucleotide Sequence
(Fasta)
ATGATAAATG AGAGCGTTTC CAAGAGAGAA GGATTCCACG AGTCTATAAG CAGAGAGACG 60
AGTGCAAGCA ACGCTTTAGG ACTATACAAT AAATTTAACG ATGAGCGAAA TCCCAGGTAT 120
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Nucleotide Fasta Sequence



>IUUC-Sce-106146|E3,Cullin|Saccharomyces cerevisiae
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Sequence Source Ensembl
Keyword

KW-0131--Cell cycle
KW-0132--Cell division
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0227--DNA damage
KW-0234--DNA repair
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway

Interpro

IPR016158--Cullin_homology
IPR001373--Cullin_N
IPR019559--Cullin_neddylation_domain
IPR011991--WHTH_DNA-bd_dom

PROSITE

PS50069--CULLIN_2

Pfam

PF00888--Cullin

SMART

SM00884--Cullin_Nedd8

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0035361--C:Cul8-RING ubiquitin ligase complex
GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0031625--F:ubiquitin protein ligase binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0007049--P:cell cycle
GO:0051301--P:cell division
GO:0006974--P:cellular response to DNA damage stimulus
GO:0006281--P:DNA repair
GO:0010526--P:negative regulation of transposition, RNA-mediated
GO:0070651--P:nonfunctional rRNA decay
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0007088--P:regulation of mitotic nuclear division
GO:0031297--P:replication fork processing
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG sce:YJL047C
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ago-007919 Ashbya gossypii 28.79 4.00e-26 111.00
IUUC-Fox-037798 Fusarium oxysporum 23.94 3.60e-02 31.20
IUUC-Ptt-103765 Puccinia triticina 28.72 5.00e-03 30.80
Created Date 25-Jun-2017

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