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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Cel-018479
Ensembl Protein ID Y77E11A.13a
UniProt Accession Q9N4A7; Q9N4A6; SEC13_CAEEL
Genbank Protein ID CCD72599.1; CCD72600.1
Protein Name Protein SEC13 homolog; Nuclear pore complex protein 20
Genbank Nucleotide ID FO081581; FO081581
Gene Name npp-20; Y77E11A.13
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
WBGene00003806 Y77E11A.13a Y77E11A.13a
WBGene00003806 Y77E11A.13b Y77E11A.13b
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA
Protein-protein Interaction
IIDiRefIndexPINAMentha
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 3.90e-26 90.3 56 89
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf..sd..tllvsGsdDgtikvWDl 30
           gH+++v+ +++  +   +ll+s+s+D+++ +W+ 
   Q: 56   GHSGPVWKVSWahPKygGLLASASYDKKVIIWNE 89
           8***********9444699*************95 PP
   
Organism Caenorhabditis elegans
Functional Description
(View)

Functional Description


     Functions as a component of the nuclear pore complex (NPC) and the COPII coat.
 Functions as a component of the nuclear pore complex (NPC) and the COPII coat.
Protein Sequence
(Fasta)
MTTVRQRIDT QHRDAIHDAQ LNIYGSRLAT CGSDRLVKIF EVRPNGQSYP MAELVGHSGP 60
VWKVSWAHPK YGGLLASASY DKKVIIWNEQ QGRWQKAYEW AAHEASTTCV AFAPHQYGLM 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Cel-018479|E3,WD_repeat|Caenorhabditis elegans
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TTTCAGCTGA AAAATGACCA CGGTCCGCCA GAGAATCGAT ACACAACATC GTGACGCAAT 60
TGTAAGTCGG AAAATCTGAA TTTTAGCTAA GAAAATCTAT TTTTTTTTTT TAAATTCTGA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Cel-018479|E3,WD_repeat|Caenorhabditis elegans
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0968--Cytoplasmic vesicle
KW-0256--Endoplasmic reticulum
KW-0931--ER-Golgi transport
KW-0472--Membrane
KW-0509--mRNA transport
KW-0906--Nuclear pore complex
KW-0539--Nucleus
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0811--Translocation
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0005789--C:endoplasmic reticulum membrane
GO:0012507--C:ER to Golgi transport vesicle membrane
GO:0005643--C:nuclear pore
GO:0051028--P:mRNA transport
GO:0051169--P:nuclear transport
GO:0010973--P:positive regulation of barrier septum assembly
GO:0015031--P:protein transport
GO:0016192--P:vesicle-mediated transport
KEGG cel:CELE_Y77E11A.13
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000671 Aegilops tauschii 36.54 1.00e-52 198.00
IUUC-Aml-001832 Ailuropoda melanoleuca 40.69 2.00e-69 254.00
IUUC-Atr-002914 Amborella trichopoda 39.86 2.00e-56 211.00
IUUC-Apl-003992 Anas platyrhynchos 42.95 1.00e-66 244.00
IUUC-Aca-005283 Anolis carolinensis 42.36 2.00e-70 258.00
IUUC-Aly-005654 Arabidopsis lyrata 39.26 5.00e-59 219.00
IUUC-Ath-006816 Arabidopsis thaliana 39.33 3.00e-57 213.00
IUUC-Ago-007827 Ashbya gossypii 39.66 1.00e-58 218.00
IUUC-Acl-008205 Aspergillus clavatus 39.53 3.00e-58 217.00
IUUC-Afl-008748 Aspergillus flavus 38.94 9.00e-60 222.00
IUUC-Afu-008791 Aspergillus fumigatus 38.98 3.00e-57 213.00
IUUC-Ani-009152 Aspergillus nidulans 39.60 2.00e-59 221.00
IUUC-Ang-009765 Aspergillus niger 39.27 3.00e-59 220.00
IUUC-Aor-009927 Aspergillus oryzae 38.85 6.00e-58 216.00
IUUC-Ate-010248 Aspergillus terreus 38.94 1.00e-59 221.00
IUUC-Ame-011478 Astyanax mexicanus 41.72 2.00e-70 257.00
IUUC-Bgr-012276 Blumeria graminis 43.51 6.00e-61 226.00
IUUC-Bta-012700 Bos taurus 41.32 3.00e-69 253.00
IUUC-Bci-013722 Botrytis cinerea 39.53 3.00e-56 210.00
IUUC-Bdi-014112 Brachypodium distachyon 37.50 9.00e-54 202.00
IUUC-Bol-015779 Brassica oleracea 38.93 2.00e-57 214.00
IUUC-Bra-017934 Brassica rapa 38.93 5.00e-57 213.00
IUUC-Cja-019956 Callithrix jacchus 42.14 9.00e-64 235.00
IUUC-Cfa-020752 Canis familiaris 41.32 6.00e-70 256.00
IUUC-Cpo-021871 Cavia porcellus 41.85 6.00e-70 256.00
IUUC-Cre-022797 Chlamydomonas reinhardtii 39.60 5.00e-59 219.00
IUUC-Csa-023393 Chlorocebus sabaeus 41.96 2.00e-70 258.00
IUUC-Cho-024786 Choloepus hoffmanni 31.75 7.00e-45 173.00
IUUC-Cin-025332 Ciona intestinalis 39.87 2.00e-67 247.00
IUUC-Csv-025926 Ciona savignyi 39.87 2.00e-66 244.00
IUUC-Cgl-026413 Colletotrichum gloeosporioides 40.07 1.00e-56 211.00
IUUC-Cne-027054 Cryptococcus neoformans 34.81 4.00e-48 183.00
IUUC-Cme-027165 Cyanidioschyzon merolae 33.24 3.00e-40 159.00
IUUC-Dre-027782 Danio rerio 41.08 1.00e-67 248.00
IUUC-Dno-029628 Dasypus novemcinctus 40.63 1.00e-68 251.00
IUUC-Dor-030650 Dipodomys ordii 37.11 2.00e-54 204.00
IUUC-Dse-031206 Dothistroma septosporum 38.46 4.00e-54 203.00
IUUC-Dme-031854 Drosophila melanogaster 42.76 2.00e-67 248.00
IUUC-Ete-032618 Echinops telfairi 28.01 1.00e-31 129.00
IUUC-Eca-033268 Equus caballus 41.46 3.00e-69 253.00
IUUC-Fca-035918 Felis catus 41.64 6.00e-71 259.00
IUUC-Fal-037551 Ficedula albicollis 42.14 4.00e-61 226.00
IUUC-Fox-037763 Fusarium oxysporum 40.54 1.00e-58 218.00
IUUC-Fso-038341 Fusarium solani 39.80 5.00e-56 209.00
IUUC-Gmo-038638 Gadus morhua 40.89 2.00e-68 250.00
IUUC-Ggr-039865 Gaeumannomyces graminis 41.95 2.00e-62 231.00
IUUC-Gga-040193 Gallus gallus 42.99 3.00e-71 260.00
IUUC-Gma-043518 Glycine max 38.26 5.00e-56 209.00
IUUC-Ggo-045252 Gorilla gorilla 41.96 7.00e-71 259.00
IUUC-Hsa-046565 Homo sapiens 41.96 7.00e-71 259.00
IUUC-Hvu-047835 Hordeum vulgare 36.67 8.00e-54 202.00
IUUC-Itr-048587 Ictidomys tridecemlineatus 41.14 4.00e-69 253.00
IUUC-Kpa-049148 Komagataella pastoris 42.11 6.00e-62 229.00
IUUC-Lch-050421 Latimeria chalumnae 41.40 9.00e-70 255.00
IUUC-Lpe-050873 Leersia perrieri 37.87 3.00e-55 207.00
IUUC-Loc-052167 Lepisosteus oculatus 41.72 4.00e-70 256.00
IUUC-Lma-053250 Leptosphaeria maculans 41.44 1.00e-58 218.00
IUUC-Laf-054304 Loxodonta africana 40.95 1.00e-68 251.00
IUUC-Mcc-055519 Macaca mulatta 41.96 1.00e-70 258.00
IUUC-Meu-056439 Macropus eugenii 41.21 2.00e-69 254.00
IUUC-Mor-057241 Magnaporthe oryzae 40.91 5.00e-60 223.00
IUUC-Mpo-057373 Magnaporthe poae 37.41 8.00e-49 185.00
IUUC-Mtr-058412 Medicago truncatula 39.00 2.00e-55 207.00
IUUC-Mla-058966 Melampsora laricipopulina 36.67 7.00e-53 199.00
IUUC-Mga-060066 Meleagris gallopavo 42.95 1.00e-66 244.00
IUUC-Mvi-060290 Microbotryum violaceum 34.74 4.00e-47 182.00
IUUC-Mmr-060717 Microcebus murinus 41.08 6.00e-69 252.00
IUUC-Mdo-062496 Monodelphis domestica 41.40 5.00e-70 256.00
IUUC-Mmu-063490 Mus musculus 41.01 9.00e-70 255.00
IUUC-Mac-064736 Musa acuminata 37.71 2.00e-55 207.00
IUUC-Mpu-066601 Mustela putorius furo 41.32 6.00e-70 256.00
IUUC-Mlu-067501 Myotis lucifugus 41.14 3.00e-69 254.00
IUUC-Nfi-068360 Neosartorya fischeri 37.01 8.00e-46 175.00
IUUC-Ncr-068928 Neurospora crassa 43.46 3.00e-64 236.00
IUUC-Nle-069028 Nomascus leucogenys 41.96 8.00e-71 259.00
IUUC-Opr-070446 Ochotona princeps 41.53 6.00e-66 242.00
IUUC-Ont-071587 Oreochromis niloticus 40.89 4.00e-68 250.00
IUUC-Oan-073211 Ornithorhynchus anatinus 41.08 3.00e-69 254.00
IUUC-Ocu-074306 Oryctolagus cuniculus 42.21 6.00e-70 256.00
IUUC-Oba-075365 Oryza barthii 37.14 1.00e-55 208.00
IUUC-Obr-076010 Oryza brachyantha 39.20 4.00e-56 209.00
IUUC-Ogl-077855 Oryza glaberrima 37.14 1.00e-55 208.00
IUUC-Ogu-078216 Oryza glumaepatula 37.38 1.00e-55 208.00
IUUC-Oin-079940 Oryza indica 37.38 1.00e-55 208.00
IUUC-Olo-080759 Oryza longistaminata 38.21 6.00e-55 206.00
IUUC-Ome-081141 Oryza meridionalis 37.38 1.00e-55 208.00
IUUC-Oni-082228 Oryza nivara 37.38 1.00e-55 208.00
IUUC-Opu-084097 Oryza punctata 38.46 3.00e-55 207.00
IUUC-Oru-084940 Oryza rufipogon 37.38 1.00e-55 208.00
IUUC-Osa-085681 Oryza sativa 37.54 1.00e-52 198.00
IUUC-Ola-087226 Oryzias latipes 41.08 4.00e-69 253.00
IUUC-Olu-087893 Ostreococcus lucimarinus 37.54 1.00e-50 191.00
IUUC-Oga-088837 Otolemur garnettii 41.64 2.00e-70 257.00
IUUC-Oar-089594 Ovis aries 41.32 1.00e-69 254.00
IUUC-Ptr-091132 Pan troglodytes 41.96 5.00e-71 259.00
IUUC-Psi-093568 Pelodiscus sinensis 42.14 3.00e-66 243.00
IUUC-Pma-094756 Petromyzon marinus 55.66 5.00e-33 130.00
IUUC-Pno-094955 Phaeosphaeria nodorum 43.31 3.00e-59 220.00
IUUC-Ppa-095578 Physcomitrella patens 38.46 2.00e-59 221.00
IUUC-Pfo-096063 Poecilia formosa 41.08 6.00e-69 252.00
IUUC-Pab-098674 Pongo abelii 41.64 1.00e-70 258.00
IUUC-Pop-099402 Populus trichocarpa 38.59 3.00e-56 210.00
IUUC-Pca-100824 Procavia capensis 34.07 4.00e-50 190.00
IUUC-Ppe-101707 Prunus persica 37.58 2.00e-54 204.00
IUUC-Pva-103161 Pteropus vampyrus 39.75 3.00e-66 244.00
IUUC-Pgr-103573 Puccinia graminis 36.91 2.00e-51 194.00
IUUC-Ptt-103700 Puccinia triticina 36.33 2.00e-48 184.00
IUUC-Pte-104267 Pyrenophora teres 42.27 4.00e-56 210.00
IUUC-Pyt-104535 Pyrenophora triticirepentis 41.38 4.00e-54 203.00
IUUC-Rno-104833 Rattus norvegicus 41.01 1.00e-69 254.00
IUUC-Sce-106437 Saccharomyces cerevisiae 40.75 4.00e-57 213.00
IUUC-Sha-106611 Sarcophilus harrisii 41.21 2.00e-69 254.00
IUUC-Sja-107654 Schizosaccharomyces japonicus 41.32 3.00e-61 226.00
IUUC-Spo-108362 Schizosaccharomyces pombe 41.41 9.00e-62 228.00
IUUC-Smo-109674 Selaginella moellendorffii 40.88 5.00e-60 223.00
IUUC-Sit-109927 Setaria italica 37.79 1.00e-55 208.00
IUUC-Sly-111852 Solanum lycopersicum 38.23 1.00e-55 208.00
IUUC-Stu-112195 Solanum tuberosum 38.23 7.00e-56 209.00
IUUC-Sbi-114563 Sorghum bicolor 40.40 2.00e-58 217.00
IUUC-Sre-114898 Sporisorium reilianum 35.26 1.00e-50 192.00
IUUC-Ssc-115995 Sus scrofa 53.64 3.00e-44 169.00
IUUC-Tgu-116793 Taeniopygia guttata 42.17 5.00e-65 239.00
IUUC-Tru-117797 Takifugu rubripes 40.58 4.00e-68 249.00
IUUC-Tni-120366 Tetraodon nigroviridis 40.26 2.00e-67 247.00
IUUC-Tca-121242 Theobroma cacao 38.93 1.00e-55 208.00
IUUC-Tre-121899 Trichoderma reesei 39.46 1.00e-55 208.00
IUUC-Tvi-122380 Trichoderma virens 39.73 8.00e-57 212.00
IUUC-Tae-124286 Triticum aestivum 36.67 1.00e-53 202.00
IUUC-Tur-126202 Triticum urartu 36.33 6.00e-53 199.00
IUUC-Tme-127181 Tuber melanosporum 36.98 9.00e-55 206.00
IUUC-Ttr-128448 Tursiops truncatus 37.93 1.00e-50 191.00
IUUC-Uma-129661 Ustilago maydis 34.21 5.00e-50 190.00
IUUC-Vda-129666 Verticillium dahliae 41.61 3.00e-57 213.00
IUUC-Vpa-130318 Vicugna pacos 41.64 7.00e-70 256.00
IUUC-Vvi-130868 Vitis vinifera 38.59 2.00e-57 214.00
IUUC-Xtr-131859 Xenopus tropicalis 43.31 5.00e-71 259.00
IUUC-Xma-133898 Xiphophorus maculatus 41.08 3.00e-69 253.00
IUUC-Yli-134559 Yarrowia lipolytica 39.66 2.00e-57 214.00
Created Date 25-Jun-2017

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