iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

SNP - dbSNP
dbSNP	Type	Alleles	Het	Se(het)	Fxn-class	Gene Name	Assembly	Chr-pos	Sequence	Entrez Gene
rs12516	snp	C/T	0.493918	0.0548094	BRCA1	17	allele_origin=T(unknown)/C(germline)	17:43044391	CTTCCCTAGCCCCCC[C/T]AGTGTGCAAGGGCAG	672
rs16940	snp	C/T	0.450049	0.149935	BRCA1	17	allele_origin=T(germline)/C(germline,somatic)	17:43093220	AGTAGCAGTATTTCA[C/T]TGGTACCTGGTACTG	672
rs16941	snp	A/G	0.450618	0.149173	BRCA1	17	allele_origin=G(inherited)/A(germline)/C(inherited)	17:43092418	AAAATGTTTTTAAAG[A/G]AGCCAGCTCAAGCAA	672
rs16942	snp	A/G	0.454401	0.143945	BRCA1	17	allele_origin=G(germline)/A(germline)	17:43091983	GCAAAAGCGTCCAGA[A/G]AGGAGAGCTTAGCAG	672
rs709630	snp	A/T			intron-variant	BRCA1	GRCh38.p7	17:43100655	atataacatatatat[A/T]acatatatatatata	672
rs799901	snp	G/T			intron-variant	BRCA1	GRCh38.p7	17:43121305	gcctgaacccgggag[G/T]cggagctggcagtga	672
rs799902	snp	C/T	0.496034	0.0443518	intron-variant	BRCA1	GRCh38.p7	17:43121331	agtgagccaagatcg[C/T]gccactgcactccag	672
rs799903	snp	A/G	0.496348	0.0425753	intron-variant	BRCA1	GRCh38.p7	17:43122889	gcctctactaaaaaa[A/G]aaaaaaaaatacaaa	672
rs799905	snp	C/G	0.499242	0.0194585	BRCA1, NBR2	17	allele_origin=G(germline)/C(unknown)	17:43125170	CCGCCCCTACCCCCC[C/G]TCAAAGAATACCCAT	672
rs799906	snp	C/T	0.49998	0.00319482	upstream-variant-2KB, intron-variant	BRCA1, NBR2	GRCh38.p7	17:43126099	CTGGGGCAAGTAGTC[C/T]TGTAAGGTCAGTGGC	672
rs799907	snp	C/G	0.253824	0.249971	upstream-variant-2KB, intron-variant	BRCA1, NBR2	GRCh38.p7	17:43126708	ctcgctcgctctcgg[C/G]gcctcctcggccttg	672
rs799908	snp	A/G	0.49998	0.00319482	upstream-variant-2KB, intron-variant	BRCA1, NBR2	GRCh38.p7	17:43126899	gccagcgcgagttcc[A/G]ggtgggcgcgggctc	672
rs799909	snp	A/G	0.0154538	0.0865337	upstream-variant-2KB, intron-variant	BRCA1, NBR2	GRCh38.p7	17:43127210	gagaggagtgcaggc[A/G]cccggcacagccctg	672
rs799911	snp	G/T			intron-variant	BRCA1	GRCh38.p7	17:43104565	accaacaatgtaagt[G/T]gcactattatttcgt	672
rs799912	snp	C/T	0.495291	0.0482933	BRCA1	17	allele_origin=T(germline)/C(unknown)	17:43105117	GTATAAACCGTGTGA[C/T]GGCAGTGATTTAGTA	672
rs799913	snp	C/T	0.221439	0.248363	intron-variant	BRCA1	GRCh38.p7	17:43106929	ctcaccacaaagcta[C/T]agtaatcaagaaagt	672
rs799914	snp	C/T	0.0718919	0.175435	intron-variant	BRCA1	GRCh38.p7	17:43107764	aatgaaattatactc[C/T]tatctcacaccaaat	672
rs799916	snp	A/C	0.499989	0.00239614	BRCA1	17	allele_origin=A(germline)/C(somatic)	17:43091173	TATAAAAGCAAATCC[A/C]GGTGTCCCAAAGCAA	672
rs799917	snp	C/T	0.483818	0.0884827	BRCA1	17	allele_origin=G(inherited)/T(inherited)/A(inherited)/C(germline)	17:43092919	GCCAGTCATTTGCTC[C/T]GTTTTCAAATCCAGG	672
rs799918	snp	C/G	0.154329	0.23097	intron-variant	BRCA1	GRCh38.p7	17:43098010	TTGAGAGCCCAGTTT[C/G]AATTCTGAGCTCAGC	672
rs799919	snp	C/T	0.495368	0.0478996	intron-variant	BRCA1	GRCh38.p7	17:43098906	cactgcaacctctgc[C/T]tcctgggttcaagcg	672
rs799921	snp	C/T	0	0	intron-variant	BRCA1	GRCh38.p7	17:43099080	cgcccacctcggcct[C/T]ccaaagtgctgggat	672
rs799922	snp	C/T	0	0	intron-variant	BRCA1	GRCh38.p7	17:43099203	ATCCATCATGTTTTT[C/T]CTTATTGCTACTCTC	672
rs799923	snp	A/G	0.287174	0.247221	BRCA1	17	allele_origin=G(germline)/A(germline)	17:43099914	AACAGTCAAGCAATT[A/G]TTGGCCAGTTCTGTG	672
rs799924	snp	A/G	0.10237	0.201756	intron-variant	BRCA1	GRCh38.p7	17:43100560	tgtgtgtgtgtgtgt[A/G]tatatatatataaca	672
rs799925	snp	A/G	0.204496	0.245824	intron-variant	BRCA1	GRCh38.p7	17:43100594	atataacatatatat[A/G]ttatatatatataac	672
rs799926	snp	A/T			intron-variant	BRCA1	GRCh38.p7	17:43100633	aacatatatatatgt[A/T]atatatatataacat	672
rs808955	snp	A/T			intron-variant	BRCA1	GRCh38.p7	17:43100510	ctatgcctggctaat[A/T]tgtgtGTGTGTGTGt	672
rs966018	snp	G/T	0	0	intron-variant	BRCA1	GRCh38.p7	17:43056633	caggccagagtgcag[G/T]ggtgcgatctcagct	672
rs1060915	snp	C/T	0.450766	0.148973	BRCA1	17	allele_origin=T(germline)/C(germline,somatic)	17:43082453	CATCATAAGTGACTC[C/T]TCTGCCCTTGAGGAC	672
rs1060920	snp	A/G			utr-variant-3-prime, nc-transcript-variant	BRCA1	GRCh38.p7	17:43044784	ATGAAACTAGAAGAG[A/G]TTTCTAAAAGTCTGA	672
rs1060921	snp	A/T			utr-variant-3-prime, nc-transcript-variant	BRCA1	GRCh38.p7	17:43044778	CTAGAAGAGATTTCT[A/T]AAAGTCTGAGATATA	672
rs1709432	snp	C/T			intron-variant	BRCA1	GRCh38.p7	17:43112934	tgcctgtaatcccag[C/T]tacttgggaggctga	672
rs1709437	snp	G/T			intron-variant	BRCA1	GRCh38.p7	17:43114423	agtctccctcttgtc[G/T]cccaggctggaatgc	672
rs1709438	snp	A/G	0.0198	0.0975087	intron-variant	BRCA1	GRCh38.p7	17:43114435	gtcgcccaggctgga[A/G]tgcagtggcatgatc	672
rs1709440	snp	C/G			intron-variant	BRCA1	GRCh38.p7	17:43104579	ttgcactattatttt[C/G]tgtatcactaagaaa	672
rs1709441	snp	C/G			intron-variant	BRCA1	GRCh38.p7	17:43116661	cgtggtggcgcacgc[C/G]tgtagttccaactac	672
rs1793979	snp	A/T	0	0	intron-variant	BRCA1	GRCh38.p7	17:43116695	ccaactctactaaaa[A/T]tacgaaaaatcagcc	672
rs1793980	snp	C/T			intron-variant	BRCA1	GRCh38.p7	17:43114462	TCCATAATTTTCATC[C/T]Gagtgagctaagatc	672
rs1793981	snp	A/C			intron-variant	BRCA1	GRCh38.p7	17:43114290	TGAACTGTATGTTTT[A/C]TGGTCAGCTTGAGTA	672
rs1793982	snp	G/T			intron-variant	BRCA1	GRCh38.p7	17:43114288	AACTGTATGTTTTAT[G/T]GTCAGCTTGAGTAAC	672
rs1793984	snp	C/G			intron-variant	BRCA1	GRCh38.p7	17:43112844	tgcactccagcctgg[C/G]cgacaagagtgaaaa	672
rs1793986	snp	A/C			intron-variant	BRCA1	GRCh38.p7	17:43104841	ATATCCCAAGAATGA[A/C]ACTCAAGTGCTGTCC	672
rs1793989	snp	A/C			intron-variant	BRCA1	GRCh38.p7	17:43123452	tgaggcaggagaatc[A/C]cttgaaccaggaggc	672
rs1799736	in-del	-/T			intron-variant	BRCA1	GRCh38.p7	17:43097295	TTTTGGGGGGAAATT[-/T]TTTAGGATCTGATTC	672
rs1799949	snp	C/T	0.453953	0.144579	BRCA1	17	allele_origin=T(germline,somatic)/C(germline)	17:43093449	TAAAAGACATGACAG[C/T]GATACTTTCCCAGAG	672
rs1799950	snp	A/G	0.0842568	0.187161	BRCA1	17	allele_origin=G(germline)/A(germline)	17:43094464	AAGAATGGAATAAGC[A/G]GAAACTGCCATGCTC	672
rs1799965	snp	C/T	0.00293366	0.0381867	BRCA1	17	allele_origin=T(germline)/C(germline)	17:43097246	TAAGGCAACTTATTG[C/T]AGGTGAGTCAAAGAG	672
rs1799966	snp	A/G	0.454828	0.143493	BRCA1	17	allele_origin=G(inherited)/T(inherited)/A(germline)	17:43071077	GCAGAATCTGCCCAG[A/G]GTCCAGCTGCTGCTC	672
rs1799967	snp	A/G	0.0346163	0.126925	BRCA1	17	allele_origin=G(germline)/A(germline)	17:43070958	CAAAAGAATGTCCAT[A/G]GTGGTGTCTGGCCTG	672
rs1800062	snp	A/G/T	0.00824027	0.0636571	BRCA1	17	allele_origin=G(germline)/T(germline)/A(germline)	17:43115746	ACCTGTCTCCACAAA[A/G/T]TGTGACCACATATTT	672
rs1800063	snp	A/G	0.0016954	0.0290659	BRCA1	17	allele_origin=G(germline)/A(germline)	17:43094550	TGGAAGTAAGGAAAC[A/G]TGTAATGATAGGCGG	672
rs1800064	snp	A/G/T	4.94907e-05	0.00497422	BRCA1	17	allele_origin=G(germline)/T(germline)/A(germline)	17:43093665	CAGGCATATTCATGC[A/G/T]CTTGAACTAGTAGTC	672
rs1800704	snp	A/G	0.00171478	0.029231	BRCA1	17	allele_origin=G(germline)/A(germline)	17:43092507	TGAGGAACATTCAAT[A/G]TCACCTGAAAGAGAA	672
rs1800707	snp	G/T	0.0122029	0.0771528	missense, nc-transcript-variant	BRCA1	GRCh38.p7	17:43082543	ACATAACCTGATAAA[G/T]CTCCAGCAGGAAATG	672
rs1800709	snp	C/T	0.00343882	0.0413229	BRCA1	17	allele_origin=T(germline)/C(germline)	17:43093010	GAAGTTAACCACAGT[C/T]GGGAAACAAGCATAG	672
rs1800726	snp	A/C/G	0	0	BRCA1	17	allele_origin=G(germline)/A(germline)	17:43070993	AAGCCAGAATTGACA[A/C/G]CTTCAACAGAAAGGG	672
rs1800740	snp	A/G	0.0016959	0.0290702	BRCA1	17	allele_origin=G(germline)/A(germline)	17:43092798	GGAAGAAAATCAAGG[A/G]AAGAATGAGTCTAAT	672
rs1800744	snp	G/T	0.00429257	0.0461287	BRCA1	17	allele_origin=G(germline)/T(germline)	17:43074471	GGTGGTACATGCACA[G/T]TTGCTCTGGGAGTCT	672
rs1800747	snp	A/C/G/T			splice-acceptor-variant	BRCA1	GRCh38.p7	17:43063952	GTTTTTCATTCTGCA[A/C/G/T]ATGCTGAGTTTGTGT	672
rs1800751	snp	C/G/T	0	0	BRCA1	17	allele_origin=G(germline)/C(germline)	17:43047676	ATTGTGGTTGTGCAG[C/G/T]CAGATGCCTGGACAG	672
rs1800757	snp	C/T	0.000153988	0.00877328	missense, nc-transcript-variant	BRCA1	GRCh38.p7	17:43051069	CCCTTCACCAACATG[C/T]CCACAGGTAAGAGCC	672
rs2070833	snp	A/C	0.140581	0.224783	intron-variant	BRCA1	GRCh38.p7	17:43090832	TTTGAATTAATGGCA[A/C]AATTGTTTGTGGTTC	672
rs2070834	snp	A/C	0.456568	0.140818	intron-variant	BRCA1	GRCh38.p7	17:43090268	ACTCTGCATAGCTCC[A/C]TTTTAAGAATATGCC	672
rs2187603	snp	A/G	0.438246	0.16451	intron-variant	BRCA1	GRCh38.p7	17:43061876	TTTTATAGGCCAGGC[A/G]TGGTGGCTCATGCCT	672
rs2227945	snp	A/G	0.00620014	0.055332	BRCA1	17	allele_origin=G(germline)/A(germline)	17:43092113	CAGCCTATGGGAAGT[A/G]GTCATGCATCTCAGG	672
rs2236762	snp	A/T	0.499989	0.00239614	intron-variant	BRCA1	GRCh38.p7	17:43074658	GACTTCTAGGCTGTC[A/T]TGCGGGCTCTTTTTT	672
rs2236763	snp	A/C	0.00318978	0.0398085	intron-variant	BRCA1	GRCh38.p7	17:43074016	TAATCCCAGTACTCC[A/C]GGAGGCCGAGGCAGG	672
rs2355967	snp	C/T			intron-variant	BRCA1	GRCh38.p7	17:43072897	CCCCACCCCCCtttt[C/T]atagagatcaggtct	672
rs2671874	snp	A/G	0.251014	0.249998	intron-variant	BRCA1	GRCh38.p7	17:43113938	aaattagctgggtgt[A/G]gtggcagatgcctgt	672
rs2854689	snp	A/G	0	0	intron-variant	BRCA1	GRCh38.p7	17:43114175	gaggccaaggcagga[A/G]gatcacttaaggcca	672
rs3092986	snp	A/G	0.0425829	0.139564	upstream-variant-2KB, intron-variant	BRCA1, NBR2	GRCh38.p7	17:43125979	ACAACACTCCAGTCC[A/G]TAACTGTTGACAAGT	672
rs3092987	snp	A/G	0.447162	0.153712	intron-variant	BRCA1	GRCh38.p7	17:43070706	GAGAAAATAATTATT[A/G]AATATTAGTGGAAAA	672
rs3092988	snp	A/G	0.438806	0.163867	intron-variant	BRCA1	GRCh38.p7	17:43049685	CTGAGTCTCTAACCA[A/G]GATAACATGTATTTT	672
rs3092994	snp	A/G	0.450357	0.149522	BRCA1	17	allele_origin=G(germline)/A(germline,somatic)	17:43063808	ATTTTTACACCTAAC[A/G]TTTAACACCTAAGGT	672
rs3092995	snp	C/G/T	0.00970359	0.0689765	BRCA1	17	allele_origin=G(germline)/C(germline)	17:43045642	AGAGCCACAGGACCC[C/G/T]AAGAATGAGCTTACA	672
rs3220757	microsatellite	(CA)17/19/20/21/22/23/24/25	0.826062	0.0733934	intron-variant	BRCA1	GRCh38.p7	17:43052782	ACAGACGGACAGAAA[(CA)17/19/20/21/22/23/24/25]TCTTACTTTACCACC	672
rs3737559	snp	A/G	0.120326	0.21374	BRCA1	17	allele_origin=G(germline)/A(unknown)	17:43082287	CTTGCTCAGCACATG[A/G]GTAATTATGGAGCCT	672
rs3765640	snp	C/T	0.457154	0.139954	BRCA1, NBR2	17	allele_origin=T(germline)/C(germline)	17:43124230	TTCTTTGGTTTGTAT[C/T]ATTCTAAAACCTTCC	672
rs3785546	snp	C/T	0.44858	0.151875	intron-variant	BRCA1	GRCh38.p7	17:43064916	GCTCACGGCAAGCTC[C/T]GCCTCCTGGGTTCAT	672
rs3950989	snp	A/G	0.456568	0.140818	intron-variant	BRCA1	GRCh38.p7	17:43085936	AATAAGCCTAATCCA[A/G]ATACAAGCTGAAGTC	672
rs4239147	snp	C/T	0.499987	0.00259581	intron-variant	BRCA1	GRCh38.p7	17:43077795	ggtgagccaagatca[C/T]gccattgcactgcag	672
rs4239148	snp	C/T	0.495213	0.048687	intron-variant	BRCA1	GRCh38.p7	17:43077840	gctgaggcaggagaa[C/T]agcttgaacctggga	672
rs4318274	snp	A/T	0.495368	0.0478996	intron-variant	BRCA1	GRCh38.p7	17:43077891	aaaattagttgggcg[A/T]ggtggtgcatacctg	672
rs4438367	snp	A/G			synonymous-codon, missense, nc-transcript-variant	BRCA1	GRCh38.p7	17:43047677	AATTGTGGTTGTGCA[A/G]CCAGATGCCTGGACA	672
rs4792972	snp	C/T	0.345679	0.230967	intron-variant	BRCA1	GRCh38.p7	17:43048520	tttctctctctctct[C/T]tttttttttttttag	672
rs4792977	snp	A/G	0.456803	0.140473	intron-variant	BRCA1	GRCh38.p7	17:43108791	agaggtcaggagttc[A/G]agaccagcctgacca	672
rs4793190	snp	C/T	0.450483	0.149354	intron-variant	BRCA1	GRCh38.p7	17:43048092	gtagacatgaggtcc[C/T]actgtattgcccagg	672
rs4793191	snp	A/G	0.450609	0.149185	intron-variant	BRCA1	GRCh38.p7	17:43052360	ATCATAGCTTGCTGC[A/G]GTATTGAACTTCTGG	672
rs4793192	snp	C/T	0.450483	0.149354	intron-variant	BRCA1	GRCh38.p7	17:43052373	GCAGTATTGAACTTC[C/T]GGGCTCAAGCAATCC	672
rs4793193	snp	A/C	0.450483	0.149354	intron-variant	BRCA1	GRCh38.p7	17:43060321	TGCTGGGATTACAGG[A/C]ATGAGCCACCACACC	672
rs4793194	snp	A/G	0.457154	0.139954	intron-variant	BRCA1	GRCh38.p7	17:43066316	TGTTAAGACTATCTC[A/G]GAGCTGTTATCAGAC	672
rs4793195	snp	C/T	0.446118	0.155041	intron-variant	BRCA1	GRCh38.p7	17:43066555	agctgggattacagg[C/T]gcacaccaccacgcc	672
rs4793197	snp	A/G	0.44546	0.155869	intron-variant	BRCA1	GRCh38.p7	17:43079885	TCTTCTTACTACAAT[A/G]GGCCTCATGCAATGA	672
rs4793203	snp	C/T	0.00119737	0.0244387	intron-variant	BRCA1	GRCh38.p7	17:43117310	AGCCGGGCGTGGTGG[C/T]GCATGCCTGTGGTCT	672
rs4793204	snp	A/G	0.457504	0.139435	upstream-variant-2KB, intron-variant	BRCA1, NBR2	GRCh38.p7	17:43127281	agatggggacttgga[A/G]aacttttatgtctag	672
rs4986844	snp	A/G	0.0010381	0.0227591	BRCA1	17	allele_origin=G(germline)/A(germline)	17:43093422	AGAGCTGAAGTTAAC[A/G]AATGCACCTGGTTCT	672
rs4986845	snp	A/G	0.00113753	0.0238217	BRCA1	17	allele_origin=G(germline)/A(germline)	17:43093364	CTTAAAGAATTTGTC[A/G]ATCCTAGCCTTCCAA	672
rs4986846	snp	C/G/T	0.000313074	0.0125078	BRCA1	17	allele_origin=G(germline)/T(germline)/C(germline)	17:43093299	AGTGTCTAATAATGC[C/G/T]GAAGACCCCAAAGAT	672
rs4986847	snp	A/C/G	0.000214184	0.0103463	BRCA1	17	allele_origin=G(germline)/A(germline)/C(germline)	17:43092758	GTACAGACAGTTAAT[A/C/G]TCACTGCAGGCTTTC	672

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