ATXN3L
DNA & RNA Element - AREsite
Gene NameMotifCDS AreaARE AreaEvidence
ATXN3L; ATX3L; MJDLATTTA466-15331548-1552;1734-1738
ATXN3L; ATX3L; MJDLWWATTTAWW466-15331732-1740
ATXN3L; ATX3L; MJDLWWWATTTAWWW466-15331731-1741
ATXN3L; ATX3L; MJDLWWWWATTTAWWWW466-15331730-1742
DNA & RNA Element - miRTarBase
Target Gene (Entrez ID)miRTarBase IDmiRNASpecies (miRNA)Target GeneSpecies (Target Gene)ExperimentsSupport TypeReferences (PMID)
MIRT644937hsa-miR-514b-3pHomo sapiensATXN3L92552Homo sapiensHITS-CLIPFunctional MTI (Weak)23824327
MIRT644938hsa-miR-514a-3pHomo sapiensATXN3L92552Homo sapiensHITS-CLIPFunctional MTI (Weak)23824327
MIRT644939hsa-miR-1238-3pHomo sapiensATXN3L92552Homo sapiensHITS-CLIPFunctional MTI (Weak)23824327
MIRT644940hsa-miR-670-3pHomo sapiensATXN3L92552Homo sapiensHITS-CLIPFunctional MTI (Weak)23824327
MIRT644941hsa-miR-4753-3pHomo sapiensATXN3L92552Homo sapiensHITS-CLIPFunctional MTI (Weak)23824327
MIRT644942hsa-miR-130b-5pHomo sapiensATXN3L92552Homo sapiensHITS-CLIPFunctional MTI (Weak)23824327
MIRT644943hsa-miR-6891-3pHomo sapiensATXN3L92552Homo sapiensHITS-CLIPFunctional MTI (Weak)23824327
MIRT644944hsa-miR-6072Homo sapiensATXN3L92552Homo sapiensHITS-CLIPFunctional MTI (Weak)23824327
MIRT644945hsa-miR-548g-3pHomo sapiensATXN3L92552Homo sapiensHITS-CLIPFunctional MTI (Weak)23824327
MIRT644946hsa-miR-548e-5pHomo sapiensATXN3L92552Homo sapiensHITS-CLIPFunctional MTI (Weak)23824327
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0004505hsa-miR-32*92552ATXN3LuuuaUAGUGUGUGU-GAUUUAAc ||:| :| | :|||||| agcaAUUAAUUAAAUUUAAAUUa219188210[hg19:X:13336776-13336798:-]0.52021336-4.78-0.1640
MIMAT0004506hsa-miR-33a*92552ATXN3LcacuacgugacaccuUUGUAAc |||||| auagucauacuuuccAACAUUa282142[hg19:X:13336944-13336965:-]0.52151206-5.05-0.1472
MIMAT0004509hsa-miR-93*92552ATXN3LgcccUUCACGAUCGAGUCGUca |:| | | :|||||| gccaAGGAGACA-UUCAGCAau319173193[hg19:X:13336793-13336813:-]0.52341240-11.04-0.1216
MIMAT0000442hsa-miR-9*92552ATXN3LugaaagccAAUAGAUCGAAAua | | :||||||| auuaaauuUAAAUUAGCUUUc-315196216[hg19:X:13336770-13336790:-]0.52021300-7.22-0.4083
MIMAT0000444hsa-miR-126*92552ATXN3LgcgcaugguuuucaUUAUUAc |||||| ----ugccuuuaaaAAUAAUu28117[hg19:X:13336969-13336985:-]0.52151206-4.84-0.3003
MIMAT0004613hsa-miR-188-3p92552ATXN3LacguuugggacgUACACCCUc |||||||| augacgagagagAUGUGGGAc210128148[hg19:X:13336838-13336858:-]0.52341457-15.46-0.8568
MIMAT0004658hsa-miR-155*92552ATXN3LacaauUACGAUUAU-ACAUCCUc :|| | ||| ||||||| ccuguGUGAUUAUACUGUAGGAu2184466[hg19:X:13336920-13336942:-]0.52151567-12.11-0.5342
MIMAT0000721hsa-miR-369-3p92552ATXN3LuuUCUAGUUGG-UACA-UAAUAa | ||:| || :||| ||||| caACAUUAUCCUGUGUGAUUAUa2203557[hg19:X:13336929-13336951:-]0.52151260-7.99-0.7425
MIMAT0000771hsa-miR-32592552ATXN3LugUGAAUGACCUGUGGAUGAUCc | | |: | || ||||||| auAAUGAUCGUUCAACUACUAGc222152174[hg19:X:13336812-13336834:-]0.52341537-10.17-0.5474
MIMAT0001639hsa-miR-409-3p92552ATXN3LuccccaaGUGGCUCGUUGUAAg :||: ||||||| auagucaUACUUUCCAACAUUa2162142[hg19:X:13336944-13336965:-]0.52151437-9.09-1.1405
MIMAT0005457hsa-miR-518a-5p92552ATXN3LcuuucccgaagggAAACGUc |||||| ggcuuuuagacagUUUGCAa28103122[hg19:X:13336864-13336883:-]0.52341206-10.31-0.1200
MIMAT0002862hsa-miR-52792552ATXN3LcuuucccgaagggAAACGUc |||||| ggcuuuuagacagUUUGCAa28103122[hg19:X:13336864-13336883:-]0.52341206-10.31-0.1200
MIMAT0004777hsa-miR-513a-3p92552ATXN3LggaaGAGUCUUU--CCACUUUAAAu :|||| || | |||||| gacaUUCAGCAAUUAAUUAAAUUUa220181205[hg19:X:13336781-13336805:-]0.52341226-7.42-0.5029
MIMAT0003247hsa-miR-582-5p92552ATXN3LucauuGACCAACUUGU-UGACAUu ||| ||| :| |||||| uuaucCUGUGUGAUUAUACUGUAg2194063[hg19:X:13336923-13336946:-]0.52151266-13.57-0.6136
MIMAT0004798hsa-miR-548b-5p92552ATXN3LccGGUUUUGGUGUUAAU-GAAAa ::||| ::| ||||| |||| aaUUAAAUUUA-AAUUAGCUUUc221195216[hg19:X:13336770-13336791:-]0.52021260-5.56-1.3098
MIMAT0004803hsa-miR-548a-5p92552ATXN3LccAUUUUGAGCGUUAAU-GAAAa | |||:|: ||||| |||| aaUUAAAUUU-AAAUUAGCUUUc221195216[hg19:X:13336770-13336791:-]0.52021260-5.29-1.3098
MIMAT0003278hsa-miR-61092552ATXN3LagggucgugugUAAAUCGAGu | ||||||: aauuaaauuuaAAUUAGCUUu211195215[hg19:X:13336771-13336791:-]0.52021260-6.23-0.1879
MIMAT0004806hsa-miR-548c-5p92552ATXN3LccguuUUUGGCGUUAAU-GAAAa |||:: ||||| |||| uaauuAAAUUUAAAUUAGCUUUc218194216[hg19:X:13336770-13336792:-]0.52021250-4.75-1.3098
MIMAT0004809hsa-miR-628-5p92552ATXN3LggaGAUCAUUUAUACAGUCGUa | || |:| | |||||| agcCAAGGAGACA-UUCAGCAa220172192[hg19:X:13336794-13336814:-]0.52341216-9.73-0.1928
MIMAT0004812hsa-miR-548d-5p92552ATXN3LccguuUUUGGUGUUAAU-GAAAa |||:: ||||| |||| uaauuAAAUUUAAAUUAGCUUUc218194216[hg19:X:13336770-13336792:-]0.52021250-4.77-1.3098
MIMAT0004909hsa-miR-450b-5p92552ATXN3LauAAGUCCUUGUAUAACGUUUu ||:|| ||| ||||||| cuUUUAG--ACAGUUUGCAAAc221105124[hg19:X:13336862-13336881:-]0.52341577-9.01-0.8179
MIMAT0004987hsa-miR-94492552ATXN3LgaguaggcuacaUGUUAUUAAa | ||||||| ----ugccuuuaAAAAUAAUUu211118[hg19:X:13336968-13336985:-]0.52151427-5.88-1.0077
MIMAT0005593hsa-miR-123892552ATXN3LccCCGUCUGUCUGCUCCUUc | || | |||:|||||| cuGUCAAAGAGAUGAGGAAa2198099[hg19:X:13336887-13336906:-]0.52341506-17.26-0.1170
MIMAT0005889hsa-miR-548l92552ATXN3LcuguuuugggcguuUAUGAAAa ||||||| uaauuuagauagucAUACUUUc291334[hg19:X:13336952-13336973:-]0.52151407-6.00-0.3693
MIMAT0005896hsa-miR-124492552ATXN3LuuGGUAGAGUA-UGUUUGGUUGAUGAa |:| | || |: : :|||||||| gaCUAAAUAAUGAUCGUUCAACUACUa225146172[hg19:X:13336814-13336840:-]0.52341557-15.54-0.6919
MIMAT0005908hsa-miR-125792552ATXN3LccagucuuggguaGUAAGUga |||||| cuagccaaggagaCAUUCAgc39170190[hg19:X:13336796-13336816:-]0.52341200-7.84-0.1090
MIMAT0005912hsa-miR-548g92552ATXN3LcaUGUUUUCAUUA-AUGUCAAAa |:||:: | | ||||||| aaAUAAGGCUUUUAGACAGUUUg22197119[hg19:X:13336867-13336889:-]0.52341477-9.26-0.4851
MIMAT0005913hsa-miR-126192552ATXN3LuucGGUUUCGGAAUAGGua |||| | |||||| uuuCCAA--CAUUAUCCug3173147[hg19:X:13336939-13336955:-]0.52151290-10.28-0.1130
MIMAT0005917hsa-miR-548m92552ATXN3LguuUUUGGUGUUUAUGGAAAc |||:: || || |||| auuAAAUUUAAAUUAGCUUUc219196216[hg19:X:13336770-13336790:-]0.52021260-3.76-0.1609
MIMAT0005932hsa-miR-302f92552ATXN3LuuUGUACCUUCGUUAAu |||| ||||||| agACAU-UCAGCAAUUa216180195[hg19:X:13336791-13336806:-]0.52341457-11.83-1.1551
MIMAT0005935hsa-miR-548i92552ATXN3LccguUUUAGGCGUUAAU-GAAAa ||||:: ||||| |||| aauuAAAUUU-AAAUUAGCUUUc219195216[hg19:X:13336770-13336791:-]0.52021240-4.84-1.3098
MIMAT0005940hsa-miR-128292552ATXN3LuucGUCU-UUUUCCGUUUGcu :||| |: |||||| uuuUAGACAGUUUGCAAACaa318106126[hg19:X:13336860-13336880:-]0.52341240-8.45-0.1413
MIMAT0005788hsa-miR-513b92552ATXN3LuauuuacUGUGG-AGGA-ACACUu |||:: |||| ||||| cuuuccaACAUUAUCCUGUGUGAu2163053[hg19:X:13336933-13336956:-]0.52151220-14.49-0.9589
MIMAT0011156hsa-miR-211492552ATXN3LcuggcgaaguuccuuCCCUGAu |||||| ugacgagagagauguGGGACUa28129150[hg19:X:13336836-13336857:-]0.52341206-18.42-0.1064
MIMAT0015071hsa-miR-318992552ATXN3LgaugggguagucugGGUUCCc |||||| cguucaacuacuagCCAAGGa28160180[hg19:X:13336806-13336826:-]0.52341206-13.64-0.1172
MIMAT0016912hsa-miR-428292552ATXN3LaggaccUACGUUUAAAau || :|||||| caauuaAU-UAAAUUUaa313190206[hg19:X:13336780-13336796:-]0.52341220-1.00-0.4569
MIMAT0000250hsa-miR-139-5p92552ATXN3LgaccucugugcACGUGACAUCu | :||||||| uccugugugauUAUACUGUAGg2124364[hg19:X:13336922-13336943:-]0.52151437-17.48-0.7331
MIMAT0000422hsa-miR-12492552ATXN3LccguaaguggcgcACGGAAu |||||| -------------UGCCUUu2817[hg19:X:13336979-13336985:-]0.52151206-7.83-0.3248
MIMAT0000429hsa-miR-13792552ATXN3LgaugcgcauaagAAUUCGUUAuu || |||||| gccaaggagacaUUCAGCAAUua312173195[hg19:X:13336791-13336813:-]0.52341270-6.19-0.2084
MIMAT0000436hsa-miR-14492552ATXN3LucAUGUAGUAGAUAUGACAu |:::| || |||||||| ccUGUGUGAU-UAUACUGUa2194462[hg19:X:13336924-13336942:-]0.52151567-12.56-1.0637
MIMAT0000458hsa-miR-19092552ATXN3LuggAUUAU-AUAGUUUGU-AUAGu | ||| | || |||| |||| uagUCAUACUUUCCAACAUUAUCc2202245[hg19:X:13336941-13336964:-]0.52151260-4.80-0.5954
MIMAT0000510hsa-miR-320a92552ATXN3LagcgggaGAGUUGGGUCGAAAa :|:|| ::|||||| aauuaaaUUUAAAUUAGCUUUc216195216[hg19:X:13336770-13336791:-]0.52021396-10.73-0.4734
MIMAT0000730hsa-miR-37792552ATXN3LuguUUUCAACGGAAACACACUa || || :| ||||||| uccAACAUUAUC-CUGUGUGAu2203353[hg19:X:13336933-13336953:-]0.52151457-12.19-0.8570
MIMAT0002878hsa-miR-50692552ATXN3LagaugagucuucccACGGAAu |||||| --------------UGCCUUu2817[hg19:X:13336979-13336985:-]0.52151206-6.78-0.3248
MIMAT0003328hsa-miR-65392552ATXN3LgucAUCUCUAACAAA-GUUGUg ||| || ||| ||||| agaUAGUCAUACUUUCCAACAu2191940[hg19:X:13336946-13336967:-]0.52151220-7.04-0.8858
MIMAT0005792hsa-miR-320b92552ATXN3LaacgggaGAGUUGGGUCGAAAa :|:|| ::|||||| aauuaaaUUUAAAUUAGCUUUc216195216[hg19:X:13336770-13336791:-]0.52021396-10.73-0.4734
MIMAT0005793hsa-miR-320c92552ATXN3LugggaGAGUUGGGUCGAAAa :|:|| ::|||||| uuaaaUUUAAAUUAGCUUUc216197216[hg19:X:13336770-13336789:-]0.52021396-10.73-0.4734
MIMAT0004929hsa-miR-190b92552ATXN3LuuGGGUUAUAGUUUGU-AUAGu | :| | || |||| |||| guCAUACUUUCCAACAUUAUCc2202445[hg19:X:13336941-13336962:-]0.52151230-6.78-0.5918
MIMAT0006764hsa-miR-320d92552ATXN3LaggaGAGUUGGGUCGAAAa :|:|| ::|||||| uaaaUUUAAAUUAGCUUUc216198216[hg19:X:13336770-13336788:-]0.52021396-10.73-0.4734
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G035583ATXN3LHomo sapiens92552
DNA & RNA Element - TargetScan
Gene NameUTR Region StartUTR Region EndAIRTotal Normalized 3P-seq-tags & PseudocountsStrandhg19_chromosomeGenome StartGenome End
ATXN3L; ATX3L; MJDL12161005.01-chrX1333676913336985
ATXN3L; ATX3L; MJDL2172180.25.01-chrX1333676713336769
DNA & RNA Element - miRcode
Gene NameTypemicroRNASeed PositionSeed TypeTotal Cons%Tr Region
ATXN3LHigh_conservedmiR-7/7abchrX:133372537-mer-A111CDS
ATXN3LHigh_conservedmiR-9/9abchrX:133372497-mer-A19CDS
ATXN3LHigh_conservedmiR-96/507/1271chrX:133384577-mer-A1115pUTR
ATXN3LHigh_conservedmiR-139-5pchrX:133369227-mer-m823pUTR
ATXN3LHigh_conservedmiR-144chrX:133369248-mer23pUTR
ATXN3LHigh_conservedmiR-17/17-5p/20ab/20b-5p/93/106ab/427/518a-3p/519dchrX:133382817-mer-A1185pUTR
ATXN3LHigh_conservedmiR-182chrX:133384577-mer-A1115pUTR
ATXN3LHigh_conservedmiR-183chrX:133381097-mer-A195pUTR
ATXN3LHigh_conservedmiR-194chrX:133381438-mer45pUTR
ATXN3LHigh_conservedmiR-199ab-5pchrX:133376637-mer-m811CDS
ATXN3LHigh_conservedmiR-199ab-5pchrX:133376937-mer-m820CDS
ATXN3LHigh_conservedmiR-19abchrX:133379417-mer-A118CDS
ATXN3LHigh_conservedmiR-203chrX:133377708-mer13CDS
ATXN3LHigh_conservedmiR-26ab/1297/4465chrX:133376537-mer-A113CDS
ATXN3LHigh_conservedmiR-27abc/27a-3pchrX:133375358-mer11CDS
ATXN3LHigh_conservedmiR-101/101abchrX:133369247-mer-A123pUTR
ATXN3LHigh_conservedmiR-34ac/34bc-5p/449abc/449c-5pchrX:133381117-mer-A195pUTR
ATXN3LHigh_conservedmiR-128/128abchrX:133375367-mer-A111CDS
ATXN3LHigh_conservedmiR-129-5p/129ab-5pchrX:133381847-mer-m805pUTR
ATXN3LMedium_conservedmiR-539/539-5pchrX:133384747-mer-m845pUTR
ATXN3LMedium_conservedmiR-590-3pchrX:133374667-mer-A17CDS
ATXN3LMedium_conservedmiR-758chrX:133382297-mer-m8135pUTR
ATXN3LMedium_conservedmiR-185/882/3473/4306/4644chrX:133384717-mer-m845pUTR
ATXN3LMedium_conservedmiR-320abcd/4429chrX:133382637-mer-m845pUTR
ATXN3LMedium_conservedmiR-370chrX:133371768-mer11CDS
ATXN3LMedium_conservedmiR-374abchrX:133377047-mer-A118CDS
ATXN3LMedium_conservedmiR-377chrX:133369337-mer-m8183pUTR
ATXN3LMedium_conservedmiR-378/422a/378bcdefhichrX:133376327-mer-A111CDS
ATXN3LMedium_conservedmiR-485-5p/1698/1703/1962chrX:133379497-mer-A17CDS
ATXN3LMedium_conservedmiR-486-5p/3107chrX:133370477-mer-m89CDS
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
ATXN3LRAID00007895hsa-miR-124-3pmiRNAMIMAT0000422ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID00248798hsa-miR-190bmiRNAMIMAT0004929ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID00335767hsa-miR-144-3pmiRNAMIMAT0000436ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID00381067hsa-miR-653-5pmiRNAMIMAT0003328ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID00427623hsa-miR-377-3pmiRNAMIMAT0000730ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID00485208hsa-miR-514a-3pmiRNAMIMAT0002883ATXN3LmRNA92552CLIP-seq0.5483
ATXN3LRAID00784612hsa-miR-1238-3pmiRNAMIMAT0005593ATXN3LmRNA92552CLIP-seq0.5483
ATXN3LRAID00862726hsa-miR-137miRNAMIMAT0000429ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID00962802hsa-miR-548e-5pmiRNAMIMAT0026736ATXN3LmRNA92552CLIP-seq0.5483
ATXN3LRAID01729825hsa-miR-4735-5pmiRNAMIMAT0019860ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID01732475hsa-miR-4753-3pmiRNAMIMAT0019891ATXN3LmRNA92552CLIP-seq0.5483
ATXN3LRAID01790962hsa-miR-190a-5pmiRNAMIMAT0000458ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID01793595hsa-miR-139-5pmiRNAMIMAT0000250ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID01852073hsa-miR-320cmiRNAMIMAT0005793ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID02332323hsa-miR-302fmiRNAMIMAT0005932ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID02357797hsa-miR-4781-3pmiRNAMIMAT0019943ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID02358607hsa-miR-320dmiRNAMIMAT0006764ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID02489503hsa-miR-212-5pmiRNAMIMAT0022695ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID02700135hsa-miR-6891-3pmiRNAMIMAT0027683ATXN3LmRNA92552CLIP-seq0.5483
ATXN3LRAID03024117hsa-miR-320amiRNAMIMAT0000510ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID03077050hsa-miR-514b-3pmiRNAMIMAT0015088ATXN3LmRNA92552CLIP-seq0.5483
ATXN3LRAID03374534hsa-miR-6072miRNAMIMAT0023697ATXN3LmRNA92552CLIP-seq0.5483
ATXN3LRAID03504596hsa-miR-130b-5pmiRNAMIMAT0004680ATXN3LmRNA92552CLIP-seq0.5483
ATXN3LRAID03508259hsa-miR-6768-5pmiRNAMIMAT0027436ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID03566374hsa-miR-548g-3pmiRNAMIMAT0005912ATXN3LmRNA92552CLIP-seq0.5483
ATXN3LRAID03642084hsa-miR-506-3pmiRNAMIMAT0002878ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID03746547hsa-miR-320bmiRNAMIMAT0005792ATXN3LmRNA92552Prediction0.1828
ATXN3LRAID04048159hsa-miR-670-3pmiRNAMIMAT0026640ATXN3LmRNA92552CLIP-seq0.5483