TRIM47
DNA & RNA Element - UTRdb
Gene NameTypeASPicDBUTRaspicRefseq IDGenome
TRIM473'UTRaff99231daBA113699NM_033452chr17:71381840-71386223:-
TRIM473'UTRc1e65d44eaNM_033452chr17:71381840-71385871:-
TRIM473'UTR8edcc57d83NM_033452chr17:71381840-71384939:-
TRIM473'UTR17828d6e25NM_033452chr17:71384110-71386223:-
TRIM473'UTRcccab0ec4aNM_033452chr17:71383517-71384167:-
TRIM473'UTR6cbd6f2855NM_033452chr17:71381840-71383266:-
TRIM473'UTR3cf01a7dfaNM_033452chr17:71381840-71382567:-
TRIM475'UTRaff99231daCA178507NM_033452chr17:71382160-71386251:-
DNA & RNA Element - circBase
circRNA IDChromStartEndStrand
hsa_circ_0045731chr177387024473871204-
DNA & RNA Element - CircNet
Circ IDGITPositionExpressSymbolEntrezCategoryStrandRefered Name
hsa-circ-TRIM47-antisense.1NM_033452Tchr17:73874074-73874551expressedTRIM4791107protein-coding+not_available
hsa-circ-TRIM47-overlap.1NM_033452Tchr17:73872342-73874618expressedTRIM4791107protein-coding-not_available
hsa-circ-TRIM47.1NM_033452Tchr17:73870244-73871204expressedTRIM4791107protein-coding-hsa_circ_0045731
DNA & RNA Element - miRTarBase
Target Gene (Entrez ID)miRTarBase IDmiRNASpecies (miRNA)Target GeneSpecies (Target Gene)ExperimentsSupport TypeReferences (PMID)
MIRT025905hsa-miR-7-5pHomo sapiensTRIM4791107Homo sapiensMicroarrayFunctional MTI (Weak)19073608
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0004499hsa-miR-26a-1*91107TRIM47gcacGUUCAUUGGUUCUUAUCc ||:|| :| ||||||| uuccCAGGU-UUCUAGAAUAGu219256276[hg19:17:73870288-73870308:-]0.54781527-14.64-0.5462
MIMAT0004681hsa-miR-26a-2*91107TRIM47cuuuGUUCAUUAGUUCUUAUCc ||:|| || ||||||| uuccCAGGU-UUCUAGAAUAGu219256276[hg19:17:73870288-73870308:-]0.54781567-13.48-0.5462
MIMAT0004702hsa-miR-339-3p91107TRIM47gccgagacagcagcUCCGCGAGu :||||||| ----ugccgggcacGGGCGCUCc210119[hg19:17:73870545-73870563:-]0.59091417-20.90-0.1564
MIMAT0002805hsa-miR-48991107TRIM47cgACGGCAUAUACA-CUAC-AGUg || | |:|| || |||| ||| ucUGGCAUGUA-GUAGAUGCUCAa221278300[hg19:17:73870264-73870286:-]0.60071210-15.34-1.1232
MIMAT0002851hsa-miR-517*91107TRIM47ucuGUCACGAAG-GU--AGAUCUCc ||| |||| || ||||||| accCAG-CCUUCUCAUUUCUAGAGg220100123[hg19:17:73870441-73870464:-]0.44081517-21.70-0.3018
MIMAT0003232hsa-miR-56891107TRIM47cacacauauguAAAUAUGUa |||||||| gcuuccaccuuUUUAUACAc210123142[hg19:17:73870422-73870441:-]0.46151457-5.21-0.5227
MIMAT0003263hsa-miR-59591107TRIM47ucuguguggugccgUGUGAAg |||||| uagaugcucaauaaACACUUg28290310[hg19:17:73870254-73870274:-]0.60071206-12.83-0.1700
MIMAT0004804hsa-miR-615-5p91107TRIM47cuAGGCUCGUGGCC-CCUGGGGg ||| || :| || ||||||| ucUCCCAG-GCAGGAGGACCCCc221154175[hg19:17:73870389-73870410:-]0.48851577-29.39-0.2780
MIMAT0004807hsa-miR-62491107TRIM47ucCAU-UAUG-GUUA--UG-GAACAc ||| ||:| |||| || ||||| uaGUAGAUGCUCAAUAAACACUUGUu220287312[hg19:17:73870252-73870277:-]0.60071240-13.89-1.0065
MIMAT0003296hsa-miR-62791107TRIM47agGAGAAAAGAAUCUCU-GAGUg || || | |: ||| |||| ccCUGUUCCCCUGCAGACCUCAc221179201[hg19:17:73870363-73870385:-]0.49491200-15.07-0.2501
MIMAT0003307hsa-miR-63791107TRIM47ugcGUCUCGGGCUUUCGGGGGUCa ||| || ||:: ||||||| uccCAG-GCAGGAGGACCCCCAGa222156178[hg19:17:73870386-73870408:-]0.48851597-28.81-0.1614
MIMAT0003324hsa-miR-66191107TRIM47ugcgcguccggucucuGGGUCCGu ||||||| acucagccuucccucuCCCAGGCa29141164[hg19:17:73870400-73870423:-]0.48851407-22.75-0.2460
MIMAT0003880hsa-miR-671-5p91107TRIM47gaggucGGGGAGGUC-CCGAAGGa | ::||:|| ||||||| ccuucuCAUUUCUAGAGGCUUCCa218106129[hg19:17:73870435-73870458:-]0.46151567-26.22-0.8819
MIMAT0003887hsa-miR-769-3p91107TRIM47uuggUUCUG-GGGCCU-CU-AGGGUc |||:| || | | || ||||| ugggAAGGCACCAGCAUGAGUCCCAc2207297[hg19:17:73870467-73870492:-]0.44491210-18.29-0.2328
MIMAT0010364hsa-miR-76191107TRIM47acacagucaaaGUG-GGACGACg |:| ||||||| ccgggcacgggCGCUCCUGCUGc212325[hg19:17:73870539-73870561:-]0.59091427-24.90-0.1341
MIMAT0004910hsa-miR-450b-3p91107TRIM47auaCCUACGUUUUACU-AGGGUu || ||: |||| ||||| gaaGGCACCAGCAUGAGUCCCAc2207597[hg19:17:73870467-73870489:-]0.44491230-15.34-0.2328
MIMAT0005869hsa-miR-120591107TRIM47gaguuucguuuGGGACGUCu |||||||| agacccuguucCCCUGCAGa210176195[hg19:17:73870369-73870388:-]0.49491457-17.93-0.3081
MIMAT0005884hsa-miR-129491107TRIM47ucuguuguuACGGUUGGAGUGu ||| :||||||| cuguuccccUGCAGACCUCACu214181202[hg19:17:73870362-73870383:-]0.49491537-15.97-0.1145
MIMAT0005893hsa-miR-130591107TRIM47agagaggguaaucuCAACUUuu |||||| cucaauaaacacuuGUUGAAug39296317[hg19:17:73870247-73870268:-]0.60071200-9.60-0.1025
MIMAT0007883hsa-miR-190991107TRIM47gccacUCGUGGGCC--GGGGACGc || |||| | ||||||| cccccAG-ACCCUGUUCCCCUGCa218171193[hg19:17:73870371-73870393:-]0.49491507-21.76-0.5272
MIMAT0007890hsa-miR-1914*91107TRIM47ggAGGGUC-A-CGCCCUGGGGAGg ||| || | | ||||||| gcUCCAAGCUACCCUAACCCCUCc221231254[hg19:17:73870310-73870333:-]0.49491427-24.84-0.2986
MIMAT0011163hsa-miR-548q91107TRIM47ggcgguaaugaaaaCGUGGUCg ||||||| cuucgucugggaagGCACCAGc296586[hg19:17:73870478-73870499:-]0.44491407-21.74-0.1610
MIMAT0015005hsa-miR-313791107TRIM47ugggguaacgaggGUC-CGAUGUCu ||| ||||||| cacuucugggagaCAGAGCUACAGc212199223[hg19:17:73870341-73870365:-]0.49491467-20.97-0.1588
MIMAT0015026hsa-miR-315391107TRIM47uuuacaGGGAU----GAGCGAAAGGGg ||||| ||| ||||||| aagcuaCCCUAACCCCUC-CUUUCCCa218236261[hg19:17:73870303-73870328:-]0.49491507-23.98-0.4862
MIMAT0015048hsa-miR-317391107TRIM47acCGGACGGAUAAAGGAGGAAa ||: |||| ||||||| aaGCUACCCUAACCCCUCCUUu221236257[hg19:17:73870307-73870328:-]0.49491567-19.35-0.3093
MIMAT0015073hsa-miR-3190-5p91107TRIM47agAGACCGGCAGAU---GGAAGGUGu ||| :: |||| ||||||| cuUCUCAUU-UCUAGAGGCUUCCACc222107131[hg19:17:73870433-73870457:-]0.46151427-14.46-0.3175
MIMAT0015076hsa-miR-319291107TRIM47aagGUGA--C-GAUGUUGGAGGGUCu |||| | || | :||||||| auaCACUCAGCCUUCCCUCUCCCAGg221137162[hg19:17:73870402-73870427:-]0.48851507-23.42-0.1737
MIMAT0016845hsa-miR-429691107TRIM47acUCGGACUC-GGGUGUa ||| |||| |||||| ccAGCAUGAGUCCCACAc2168299[hg19:17:73870465-73870482:-]0.44491316-18.60-0.1480
MIMAT0016846hsa-miR-429791107TRIM47gugucuGUCCUUCCGu ::||||||| uucgucUGGGAAGGCa2116681[hg19:17:73870483-73870498:-]0.44901427-16.04-0.1270
MIMAT0016858hsa-miR-430691107TRIM47auGACGG-AAAGA-GAGGu ||||| | ||| |||| ugCUGCCGUCUCUGCUCCa2162038[hg19:17:73870526-73870544:-]0.41531220-21.47-0.1338
MIMAT0016873hsa-miR-432291107TRIM47gggGUGCGCG-ACUC-GGGUGUc ||| || |||| |||||| aggCACCAGCAUGAGUCCCACAc2197799[hg19:17:73870465-73870487:-]0.44491296-22.12-0.1509
MIMAT0016891hsa-miR-426591107TRIM47gggucUCG-ACUC-GGGUGUc ||| |||| |||||| gcaccAGCAUGAGUCCCACAc2157999[hg19:17:73870465-73870485:-]0.44491256-23.27-0.1495
MIMAT0016902hsa-miR-427291107TRIM47ugUUAGUGAUCAACUUAc || |||| ||||||| auAAACACUUGUUGAAUg217300317[hg19:17:73870247-73870264:-]0.60071647-17.35-1.0034
MIMAT0000256hsa-miR-181a91107TRIM47ugAG-UGGCUGU-CGCAACUUACaa || |: ||| :|||||||| gcUCAAUAAACACUUGUUGAAUG--322295317[hg19:17:73870247-73870269:-]0.60071350-18.05-0.1015
MIMAT0000257hsa-miR-181b91107TRIM47ugGGUGGCUGU-CGUUACUUACaa | |: ||| :: |||||| cuCAAUAAACACUUGUUGAAUG--322296317[hg19:17:73870247-73870268:-]0.60071240-11.45-0.1015
MIMAT0000258hsa-miR-181c91107TRIM47ugaguggcUGUCCAACUUACaa || |||||||| caauaaacACUUGUUGAAUG--315298317[hg19:17:73870247-73870266:-]0.60071340-11.33-0.1025
MIMAT0000430hsa-miR-13891107TRIM47gcCGGACUAAGUGUUGUGGUCGa |:|||: | ::||||||| ucGUCUGG--GAAGGCACCAGCa2226787[hg19:17:73870477-73870497:-]0.44491507-23.37-0.2851
MIMAT0000430hsa-miR-13891107TRIM47gcCGGACUAAGUGU-UGU-GGUCGa || ||| || || ||| ||||| caGCAUGAGUCCCACACACCCAGCc22283107[hg19:17:73870457-73870481:-]0.44491360-18.58-0.2993
MIMAT0000430hsa-miR-13891107TRIM47gccGGACUAAGUGUUGUG-GUCGa ||| ||:|: |||| |||| ccaCCU-UUUUAU-ACACUCAGCc221127148[hg19:17:73870416-73870437:-]0.48221200-17.62-0.3789
MIMAT0000455hsa-miR-18591107TRIM47aguccuUGACGG-AAAGA-GAGGu :||||| | ||| |||| gcuccuGCUGCCGUCUCUGCUCCa2171538[hg19:17:73870526-73870549:-]0.41531230-21.13-0.1351
MIMAT0002806hsa-miR-490-3p91107TRIM47gucguaccucAGGAGGUCCAAc |:: ||||||| uaaccccuccUUUCCCAGGUUu213245266[hg19:17:73870298-73870319:-]0.54781447-14.01-0.5016
MIMAT0002821hsa-miR-181d91107TRIM47ugGGUGGCUGU-UGUUACUUACaa | |: ||| :: |||||| cuCAAUAAACACUUGUUGAAUG--322296317[hg19:17:73870247-73870268:-]0.60071240-12.06-0.1015
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G049357TRIM47Homo sapiens91107
DNA & RNA Element - TargetScan
Gene NameUTR Region StartUTR Region EndAIRTotal Normalized 3P-seq-tags & PseudocountsStrandhg19_chromosomeGenome StartGenome End
TRIM47; GOA; RNF100131810010.576-chr177387024573870563
TRIM47; GOA; RNF10031932247.37110.576-chr177387024173870245
DNA & RNA Element - RepTar
Gene NamemiRNABeginEndProfile
TRIM47hsa-miR-1294beg:187end:202pic:3' TCTGTTGTTACGGTTGGAGTGT 5'& ||| .||||||| &5' ---------TGCAGACCTCAC- 3'
TRIM47hsa-miR-26a-1starbeg:257end:276pic:3' GCACGTTCATTGGTTCTTATCC 5'& ||.|| |. ||||||| &5' ----CAGGTTTCT-AGAATAG- 3'
TRIM47hsa-miR-26a-2starbeg:257end:276pic:3' CTTTGTTCATTAGTTCTTATCC 5'& ||.|| || ||||||| &5' ----CAGGTT-TCTAGAATAG- 3'
TRIM47kshv-miR-K12-9starbeg:217end:228pic:3' TCGCCCCAAATGCGTCGACCCA 5'& |||||||| &5' -------------CAGCTGGG- 3'
TRIM47hsa-miR-147beg:82end:102pic:3' CGTCTTCGTAAAGGTGTGTG 5'& ||| .||. |||||||| &5' GCATGAGTC---CCACACAC 3'
TRIM47hsa-miR-490-3pbeg:249end:266pic:3' GTCGTACCTCAGGA---GGTCCAAC 5'& |||| ||||||| &5' ----------TCCTTTCCCAGGTT- 3'
TRIM47hsa-miR-1909beg:174end:193pic:3' GCCACTCGTGGGCC-GGGGACGC 5'& || | ||.| ||||||| &5' ----GA-C-CCTGTTCCCCTGC- 3'
TRIM47hsa-miR-3173beg:240end:258pic:3' ACCGGACGGATAAAGGAGGAAA 5'& |||| |||||||| &5' -------CCTAACCCCTCCTTT 3'
TRIM47hsa-miR-1205beg:180end:196pic:3' GAGTTTCGTTTGGGACGTCT 5'& |. ||||||||| &5' ------GTTC-CCCTGCAGA 3'
TRIM47hsa-miR-761beg:7end:26pic:3' ACACAGTCAAAGTG-GGACGACG 5'& |.| |.| |||||||| &5' -----CGGG--CGCTCCTGCTGC 3'
TRIM47hsa-miR-4254beg:30end:41pic:3' CTCTACCACCTCATCGAGGTCCG 5'& |||||||| &5' --------------GCTCCAGG- 3'
TRIM47ebv-miR-BART17-3pbeg:68end:90pic:3' TGATTCCCCTGTGGTCCGTATGT 5'& ||..| |.||||| ||||. &5' -CTGGGAAGGCACCA-GCATG-- 3'
TRIM47ebv-miR-BART6-5pbeg:99end:110pic:3' GGATACCTAACCTGGTTGGAAT 5'& |||.|||| &5' -------------CCAGCCTT- 3'
TRIM47hsa-miR-548qbeg:76end:87pic:3' GGCGGTAATGAAAACGTGGTCG 5'& |||||||| &5' --------------GCACCAGC 3'
TRIM47hsa-miR-1976beg:158end:170pic:3' TGTCGTTCCTCCCGTCCTCC 5'& ||||||||| &5' -----------GGCAGGAGG 3'
TRIM47hsa-miR-4297beg:70end:82pic:3' GTGTCTGTCCTTCCGT 5'& .|||||||| &5' -------GGGAAGGCA 3'
TRIM47hsa-miR-103-2starbeg:26end:46pic:3' GTTCCGTCGT-GACAT--TTCTTCGA 5'& |. ||| |.|||||| &5' -------GTCTCTGCTCCAGGAAGCT 3'
TRIM47hsa-miR-1202beg:150end:172pic:3' GAGGGGGTGACGTCGACCGTG 5'& |||.|||| |||| || || &5' CTCTCCCAG-GCAGGAGG-AC 3'
TRIM47hsa-miR-1207-5pbeg:45end:66pic:3' GGGGAGGGTCGGAGGGACGGT 5'& |.||||. .||| |.|| || &5' CTCCTCTGGGCC-CTCT-CC- 3'
TRIM47hsa-miR-1237beg:158end:171pic:3' GACCCCCTGCCTCGTCTTCCT 5'& .||||.|||| &5' -----------GGCAGGAGGA 3'
TRIM47hsa-miR-1262beg:88end:105pic:3' TAGGAAGATGTTTAAGTGGGTA 5'& .||| ||| |||||| &5' GTCCC---ACA----CACCCA- 3'
TRIM47hsa-miR-1275beg:141end:161pic:3' CTGTCGGA---GAGGGGGTG 5'& |||||| |||.|||| &5' --CAGCCTTCCCTCTCCCA- 3'
TRIM47hsa-miR-1299beg:103end:123pic:3' AGGGAGTGTGTCTTAAGGTCTT 5'& ||.|| ||. |||.|||. &5' -CCTTCTCAT----TTCTAGAG 3'
TRIM47hsa-miR-1299beg:250end:273pic:3' AGGGAGTGTGTCTTAAGGTCTT 5'& |||.| | ||| |||.|||| &5' TCCTTTCC-CAGGTTTCTAGAA 3'
TRIM47hsa-miR-1299beg:22end:42pic:3' AGGGAGTG-TGTCTTAAGGTCTT 5'& || || | .| |||||.| &5' -CCGTCTCTGC-----TCCAGGA 3'
TRIM47hsa-miR-1302beg:81end:97pic:3' AAATCGTATTCATACAGGGTT 5'& |||||.| |||||| &5' ---AGCATGA----GTCCCA- 3'
TRIM47hsa-miR-1303beg:255end:272pic:3' TCTCGTTCTGGGG-CAGAGATTT 5'& ||| ||.||||.| &5' ---------CCCAGGTTTCTAGA 3'
TRIM47hsa-miR-1538beg:39end:60pic:3' TCCTTGTCGTCGTC--GGGCCCGGC 5'& ||| || .|.||||| &5' ------AGCTGCCTCCTCTGGGCC- 3'
TRIM47hsa-miR-1914beg:0end:14pic:3' GTCTTCACCCGGCCCGTGTCCC 5'& |||||||||.|| &5' ---------GCCGGGCACGGG- 3'
TRIM47hsa-miR-193bstarbeg:181end:200pic:3' AGTAGAGCGGGAGTTTTGGGGC 5'& .|| |||| |.|||.| &5' ----TTC-CCCTGCAGACCTC- 3'
TRIM47hsa-miR-196abeg:30end:50pic:3' GGGTTGTTGTACTTTGATGGAT 5'& | .| || |||.||.||| &5' --CTGCTCCAGGAAGCTGCCT- 3'
TRIM47hsa-miR-196bbeg:28end:50pic:3' GGGTTGTTGTCCTTTGATGGAT 5'& |.| .| ||||||.||.||| &5' CTCTGCTCCAGGAAGCTGCCT- 3'
TRIM47hsa-miR-196bbeg:154end:176pic:3' GGGTTGTTGTCCT-TTGATGGAT 5'& ||||. .||||| .|| || &5' CCCAG--GCAGGAGGACCCCC-- 3'
TRIM47hsa-miR-198beg:174end:198pic:3' CTTGGATAGAGGGGAGACCTGG 5'& || |||.| |||||| |||| &5' GACCCTGT-TCCCCTGCAGACC 3'
TRIM47hsa-miR-198beg:37end:60pic:3' CTTGGATAGAGGGGAGACCTGG 5'& ||| ||. | |.|||||||.|| &5' GAAGCTG-C-CTCCTCTGGGCC 3'
TRIM47hsa-miR-2114starbeg:106end:127pic:3' TTCAGGG-AACGAACTCCGAGC 5'& ||.| || || ||||||. &5' ---TCTCATTTCTAGAGGCTT- 3'
TRIM47hsa-miR-222beg:272end:291pic:3' TGGGTCATCGGTC-TACATCGA 5'& .|||. | | ||||||. &5' ---TAGTGTCTGGCATGTAGT- 3'
TRIM47hsa-miR-296-3pbeg:137end:152pic:3' CCTCTCGGAGGTGGGTTGGGAG 5'& |||.||.||.|| &5' ----------CACTCAGCCTTC 3'
TRIM47hsa-miR-296-3pbeg:87end:111pic:3' CCTCTCGGAG-GTGGGTTGGGAG 5'& ||| || | ||||||.||.|| &5' -GAGTCCCACACACCCAGCCTTC 3'
TRIM47hsa-miR-30bstarbeg:142end:162pic:3' CTTCATTTGT-AGGTGGAGGGTC 5'& |.| ||| .||||||| &5' ------AGCCTTCCCTCTCCCAG 3'
TRIM47hsa-miR-30c-1starbeg:142end:162pic:3' CCTCATTTGTT-GGGAGAGGGTC 5'& |.| ||||||||||| &5' ------AGCCTTCCCTCTCCCAG 3'
TRIM47hsa-miR-30c-1starbeg:249end:263pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& .|||.|||||| &5' -----------TCCTTTCCCAG 3'
TRIM47hsa-miR-30c-2starbeg:247end:263pic:3' TCTCATTTGTCGGA--AGAGGGTC 5'& ||| |.|||||| &5' -----------CCTCCTTTCCCAG 3'
TRIM47hsa-miR-30c-2starbeg:141end:162pic:3' TCTCATTTGTCGGA----AGAGGGTC 5'& |||||| |||||||| &5' --------CAGCCTTCCCTCTCCCAG 3'
TRIM47hsa-miR-3146beg:256end:287pic:3' GGTAAGAAAGATA-------GGATCGTAC 5'& ||| |||||| .||.||||| &5' CCAGG-TTTCTAGAATAGTGTCTGGCATG 3'
TRIM47hsa-miR-3153beg:239end:261pic:3' TTTACAGGGAT----GAGCGAAAGGGG 5'& ||||| ||| ||||||| &5' ------CCCTAACCCCTC-CTTTCCC- 3'
TRIM47hsa-miR-3172beg:163end:183pic:3' ATTCCTGACGTTTTGGGGT 5'& .||||| | |.||||. &5' -GAGGACCCCCAGACCCT- 3'
TRIM47hsa-miR-3179beg:57end:69pic:3' TGCAAATTTAAAGTGGGGAAGA 5'& | |.||||| &5' ------------CTCTCCTTC- 3'
TRIM47hsa-miR-3180-5pbeg:191end:229pic:3' GCTGC-------ACCC-C-GCCTCGCA---GACCTTC 5'& ||| |||| | | |||| ||||.| &5' -GACCTCACTTCTGGGAGACAGAGCTACAGCTGGGA- 3'
TRIM47hsa-miR-3180-5pbeg:65end:77pic:3' GCTGCACCCCGCCTCGCAGACCTTC 5'& |||||||.| &5' ---------------CGTCTGGGA- 3'
TRIM47hsa-miR-3191beg:165end:189pic:3' GACAGACC----GGTC-GATGCAGGGGT 5'& || |||| | .||.||| &5' ------GGACCCCCAGACCCTGTTCCC- 3'
TRIM47hsa-miR-3198beg:248end:270pic:3' AGAGGTAAGGGGTCCTGAGGTG 5'& |||| ||.|||||| .||.| &5' -CTCC-TTTCCCAGGTTTCTA- 3'
TRIM47hsa-miR-3202beg:248end:260pic:3' TAATTTCGAGAAGAGGGAAGGT 5'& ||||.|||| &5' ------------CTCCTTTCC- 3'
TRIM47hsa-miR-320cbeg:127end:148pic:3' TGGGAGAGT---TGGGTCGAAAA 5'& |||.|.|.| ||.|||| &5' ACCTTTTTATACACTCAGC---- 3'
TRIM47hsa-miR-320ebeg:128end:148pic:3' GGAAGAGT---TGGGTCGAAA 5'& ||||.|.| ||.|||| &5' CCTTTTTATACACTCAGC--- 3'
TRIM47hsa-miR-33bbeg:279end:297pic:3' CGTTACGTTGTCGTTACGTG 5'& || |||.|..|| |||| &5' GC-ATGTAGTAG--ATGC-- 3'
TRIM47hsa-miR-34bstarbeg:30end:50pic:3' GTTAGTCGATTA-CTGTGACGGAT 5'& ||| || .|||||| &5' ------GCTCCAGGAAGCTGCCT- 3'
TRIM47hsa-miR-377starbeg:96end:110pic:3' CTTAAGTGGTTCCCGTTGGAGA 5'& |||| ||.|||. &5' -----CACC-----CAGCCTT- 3'
TRIM47hsa-miR-384beg:67end:78pic:3' ATACTTGTTAAAGATCCTTA 5'& |||.|||| &5' -----------TCTGGGAA- 3'
TRIM47hsa-miR-4257beg:139end:156pic:3' GAGTCAGGGGTGGAGACC 5'& ||||| ||. ||||| &5' CTCAG-CCTTCCCTCT-- 3'
TRIM47hsa-miR-4260beg:25end:41pic:3' ACCCTGAGGTACGGGGTTC 5'& ||. |||.|||.| &5' ------TCTCTGCTCCAGG 3'
TRIM47hsa-miR-4270beg:44end:62pic:3' CGGGAGGGGACTGAGGGACT 5'& |||||.|||. |||| &5' --CCTCCTCTGGG-CCCT-- 3'
TRIM47hsa-miR-4271beg:239end:261pic:3' GGGG-TGGAAAAGAAGGGGG 5'& |||. ||| |||.||| &5' CCCTAACCCCTCCTTTCCC- 3'
TRIM47hsa-miR-4280beg:26end:51pic:3' CGAGACGA-GTCT--TGATGTGAG 5'& ||||||| |||. .||.| ||| &5' -CTCTGCTCCAGGAAGCTGC-CTC 3'
TRIM47hsa-miR-4296beg:81end:99pic:3' ACTCGGACTC-GGGTGTA 5'& ||| |||| |||||| &5' --AGCATGAGTCCCACA- 3'
TRIM47hsa-miR-4300beg:115end:130pic:3' CTTCATCAGGTCGAGGGT 5'& ||| .|||.||| &5' ----TAGA--GGCTTCCA 3'
TRIM47hsa-miR-4305beg:272end:283pic:3' CTTGACCTCCACAGATCC 5'& ||||||.| &5' ---------GTGTCTGG- 3'
TRIM47hsa-miR-4311beg:94end:118pic:3' GTGTGAGTCG--AGAG-AAAG 5'& ||||| |||| |||| |||| &5' CACACCCAGCCTTCTCATTTC 3'
TRIM47hsa-miR-4314beg:246end:264pic:3' GACAGGGT--AAAGGGTCTC 5'& ||| ||||||||. &5' ----CCCTCCTTTCCCAGG- 3'
TRIM47hsa-miR-4315beg:24end:45pic:3' CAGGT-CGA-GTCTTTCGCC 5'& |||. ||| |||.|||| &5' GTCTCTGCTCCAGGAAGC-- 3'
TRIM47hsa-miR-4316beg:77end:98pic:3' GTGGTCGA--TCGGAGTGG 5'& ||||||| ||.| ||| &5' CACCAGCATGAGTCCCAC- 3'
TRIM47hsa-miR-432beg:19end:42pic:3' GGTGGGTTACTGGATGAGGTTCT 5'& | || .||.|||||.|| &5' CTGCCGTC---TCTGCTCCAGGA 3'
TRIM47hsa-miR-4322beg:79end:99pic:3' GGGGTGCGCGACTC-GGGTGTC 5'& ||| || |||| |||||| &5' --CCA-GCA-TGAGTCCCACA- 3'
TRIM47hsa-miR-4326beg:66end:88pic:3' CAGACCC-TCTGTCTCCTTGT 5'& ||||||| ||.|| |.|| &5' GTCTGGGAAGGCACC--AGCA 3'
TRIM47hsa-miR-4326beg:200end:222pic:3' CAGACCCTCTGTCTCCTTGT 5'& |||||||||||||| ||| &5' -TCTGGGAGACAGAGCTACA 3'
TRIM47hsa-miR-432starbeg:157end:178pic:3' TCTGTACCTCCTCGGTAGGTC 5'& ||.|| |||||| || |||| &5' AGGCA-GGAGGA-CCC-CCAG 3'
TRIM47hsa-miR-449cbeg:28end:50pic:3' TGTCGGCGATCGTTATGTGACGGAT 5'& |.||| ||. .|||||| &5' ----CTGCTC-CAGGAAGCTGCCT- 3'
TRIM47hsa-miR-485-5pbeg:92end:110pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& || ||| |||||||. &5' -----CA-CACACCCAGCCTT- 3'
TRIM47hsa-miR-485-5pbeg:131end:151pic:3' CTTAAGTA-GTGCCGGTCGGAGA 5'& ||.|| ||| .||||||. &5' ---TTTATACAC--TCAGCCTT- 3'
TRIM47hsa-miR-500bbeg:154end:171pic:3' TGGGTCCATCGTTCCTAA 5'& |||||| || .|||| &5' -CCCAGGCAG-GAGGA-- 3'
TRIM47hsa-miR-516a-3pbeg:25end:45pic:3' TGGGAGACTT--TCCTTCGT 5'& .||||| ||||||| &5' --TCTCTGCTCCAGGAAGC- 3'
TRIM47hsa-miR-516bstarbeg:25end:45pic:3' TGGGAGACTT--TCCTTCGT 5'& .||||| ||||||| &5' --TCTCTGCTCCAGGAAGC- 3'
TRIM47hsa-miR-517starbeg:102end:124pic:3' TCTGTCACGAAGGT---AGATCTCC 5'& ||| ||||. |||||||| &5' ---CAGC-CTTCTCATTTCTAGAGG 3'
TRIM47hsa-miR-518cstarbeg:102end:124pic:3' GTCTTTCAC-GAAGGG---AGGTCTCT 5'& | ||||.| ||.||||. &5' --------GCCTTCTCATTTCTAGAGG 3'
TRIM47hsa-miR-518d-5pbeg:252end:272pic:3' GTCTTTCACGAAGGG-----AGATCTC 5'& .||||| |||||| &5' ---------TTTCCCAGGTTTCTAGA- 3'
TRIM47hsa-miR-518estarbeg:252end:272pic:3' GTCTTTCGCGAAGGG-----AGATCTC 5'& .||||| |||||| &5' ---------TTTCCCAGGTTTCTAGA- 3'
TRIM47hsa-miR-518fbeg:198end:219pic:3' GGAGATTTCTCT-TCGCGAAAG 5'& |.||| ..|||| || ||| &5' CTTCT-GGGAGACAGAGCT--- 3'
TRIM47hsa-miR-518fstarbeg:252end:272pic:3' CTCTTTCACGAAGGG-----AGATCTC 5'& .||||| |||||| &5' ---------TTTCCCAGGTTTCTAGA- 3'
TRIM47hsa-miR-519astarbeg:252end:272pic:3' GTCTTTCGCGAAGGG-----AGATCTC 5'& .||||| |||||| &5' ---------TTTCCCAGGTTTCTAGA- 3'
TRIM47hsa-miR-519b-5pbeg:252end:272pic:3' GTCTTTCGCGAAGGG-----AGATCTC 5'& .||||| |||||| &5' ---------TTTCCCAGGTTTCTAGA- 3'
TRIM47hsa-miR-519c-5pbeg:252end:272pic:3' GTCTTTCGCGAAGGG-----AGATCTC 5'& .||||| |||||| &5' ---------TTTCCCAGGTTTCTAGA- 3'
TRIM47hsa-miR-520a-5pbeg:192end:209pic:3' TCTTTCATGAAG-GGAGACCTC 5'& || || |.|||||. &5' -------ACCTCACTTCTGGG- 3'
TRIM47hsa-miR-520a-5pbeg:36end:58pic:3' TCTTTC-ATGAAGGGAGACCTC 5'& ||.||| |.| .|||||||. &5' AGGAAGCTGCC-TCCTCTGGG- 3'
TRIM47hsa-miR-520c-5pbeg:252end:272pic:3' GTCTTTCACGAAGGG-----AGATCTC 5'& .||||| |||||| &5' ---------TTTCCCAGGTTTCTAGA- 3'
TRIM47hsa-miR-522starbeg:252end:272pic:3' GTCTTTCGCGAAGGG-----AGATCTC 5'& .||||| |||||| &5' ---------TTTCCCAGGTTTCTAGA- 3'
TRIM47hsa-miR-523starbeg:252end:272pic:3' GTCTTTCGCGAAGGG-----AGATCTC 5'& .||||| |||||| &5' ---------TTTCCCAGGTTTCTAGA- 3'
TRIM47hsa-miR-525-5pbeg:35end:58pic:3' TCTTTC-ACGTAGGGAGACCTC 5'& ||.||| ||| .|||||||. &5' AGGAAGCTGCC-TCCTCTGGG- 3'
TRIM47hsa-miR-526abeg:252end:272pic:3' GTCTTTCACGAAGGG-----AGATCTC 5'& .||||| |||||| &5' ---------TTTCCCAGGTTTCTAGA- 3'
TRIM47hsa-miR-564beg:15end:36pic:3' CGGACGACTGT-GGCACGGA 5'& ||||||| |. |. |||. &5' -CCTGCTGCCGTCTCTGCT- 3'
TRIM47hsa-miR-575beg:12end:37pic:3' CGAGGACA--GGTT--GACCGAG 5'& ||||||| ||. || |||| &5' GCTCCTGCTGCCGTCTCT-GCTC 3'
TRIM47hsa-miR-601beg:44end:60pic:3' GAGGAGGTTGTTAGGATCTGGT 5'& ||||| .||.|.|| &5' --CCTCC------TCTGGGCC- 3'
TRIM47hsa-miR-601beg:248end:272pic:3' GAGGAGGTTGTT--AGGATCTGGT 5'& |||||.. ||. |.||||| &5' CTCCTTTCCCAGGTTTCTAGA--- 3'
TRIM47hsa-miR-615-5pbeg:155end:176pic:3' CTAGGCTCGTGGCC-CCTGGGGG 5'& || ||| || |||||||| &5' ---CCAGGCA--GGAGGACCCCC 3'
TRIM47hsa-miR-615-5pbeg:43end:63pic:3' CTAGGCTCGT-GGCC-CCTGGGGG 5'& || || ||.|||.| &5' -------GCCTCCTCTGGGCCCTC 3'
TRIM47hsa-miR-626beg:223end:234pic:3' TTCTGTAAAAGTCTGTCGA 5'& | .||||||| &5' ---------TGGGACAGCT 3'
TRIM47hsa-miR-627beg:105end:129pic:3' AGGAGAAAAGAATCTCTGAGTG 5'& |.||| |||| |||||.|| | &5' TTCTCATTTC-TAGAGGCTTCC 3'
TRIM47hsa-miR-631beg:251end:267pic:3' CGACTCCAGACCCGGTCCAGA 5'& || ||||||.| &5' --------CTTTCCCAGGTTT 3'
TRIM47hsa-miR-637beg:156end:178pic:3' TGCGTCTCGGGCTTTC-GGGGGTCA 5'& ||| || |.|.| ||||||| &5' ---CAG-GCA-GGAGGACCCCCAG- 3'
TRIM47hsa-miR-637beg:245end:263pic:3' TGCGTCTCGGGCTTTCGGGGGTCA 5'& ||| ..||||| &5' --------CCCCTCCTTTCCCAG- 3'
TRIM47hsa-miR-637beg:136end:162pic:3' TGCGTCTCGGGCTTTCGGGGGTCA 5'& || | ||||. |.||||| &5' ACACTCAGCCTTCCCTCTCCCAG- 3'
TRIM47hsa-miR-648beg:175end:197pic:3' TGGT-CAC-GGGACGTGTGAA 5'& ||| || ||||||| || &5' ACCCTGTTCCCCTGCAGAC-- 3'
TRIM47hsa-miR-650beg:32end:53pic:3' CAGGACTCTCGCGACGGAGGA 5'& ||| .|| |||||||||| &5' -TCCA-GGAA-GCTGCCTCCT 3'
TRIM47hsa-miR-661beg:247end:265pic:3' TGCGCGTCCGGTCTCT-GGGTCCGT 5'& || ||||||. &5' ---------CCTCCTTTCCCAGGT- 3'
TRIM47hsa-miR-671-5pbeg:241end:269pic:3' GAGGTCGGGGAGGTC-----CCGAAGGA 5'& |.| ||||||| ||.|||. &5' --CTAACCCCTCCTTTCCCAGGTTTCT- 3'
TRIM47hsa-miR-671-5pbeg:99end:129pic:3' GAGGTCGGG------GAGGTC-CCGAAGGA 5'& ||||||. .||.|| ||||||| &5' --CCAGCCTTCTCATTTCTAGAGGCTTCC- 3'
TRIM47hsa-miR-675starbeg:267end:290pic:3' ACTCGCCACTC-CCGTATGTC 5'& || ||| |||||..|| &5' -GAATAGTGTCTGGCATGTAG 3'
TRIM47hsa-miR-760beg:89end:108pic:3' AGGGGTGTCTGGGTCTCGGC 5'& .|||||| |||| |||| &5' -TCCCACACACCC--AGCC- 3'
TRIM47hsa-miR-875-3pbeg:255end:271pic:3' GTGTTGGAGTCACAAAGGTCC 5'& || ||| |||||.|| &5' -----CC-CAG-GTTTCTAG- 3'
TRIM47hsa-miR-877beg:48end:68pic:3' GGGACGCGGTAGAGGAGATG 5'& |.||| ||| ||||||. &5' CTCTGGGCCCTCTCCTT--- 3'
TRIM47hsa-miR-885-3pbeg:5end:27pic:3' ATAGGTGA-TGTG-GGGCGACGGA 5'& ||| .|.| ||.|||||| &5' ----CACGGGCGCTCCTGCTGCC- 3'
TRIM47hsa-miR-92a-1starbeg:88end:109pic:3' TCGTAACGTTGGCTA-GGGTTGGA 5'& |. | ||||.||| &5' ------GTCCCACACACCCAGCCT 3'
TRIM47hsa-miR-92bstarbeg:11end:33pic:3' GTGACGTGGCGCAGGGCAGGGA 5'& |.|| | |.|| | |||||.|| &5' CGCT-C-CTGC-TGCCGTCTCT 3'
TRIM47hsa-miR-939beg:167end:190pic:3' GTGGGGGTCTCGGAGTCGAGGGGT 5'& ||||||||| ||| |.||||| &5' -ACCCCCAGACCCT--GTTCCCC- 3'
TRIM47hsa-miR-98beg:40end:51pic:3' TTGTTATGTTGAATGATGGAGT 5'& .||.|||| &5' -------------GCTGCCTC- 3'
TRIM47hsv1-miR-H14-3pbeg:0end:12pic:3' CAGCGTGCGCGGGCCGTGTCT 5'& ||| |||||.| &5' ---------GCCGGGCACGG- 3'
TRIM47hsv1-miR-H4starbeg:156end:167pic:3' TGATCGCTCAATCTGTCCGTTC 5'& ||||||.| &5' --------------CAGGCAGG 3'
TRIM47hsv1-miR-H6-5pbeg:110end:132pic:3' ATGTGGGGGGA-CGGAAGGTGG 5'& ||. |. | |||||||| &5' --CATTTCTAGAGGCTTCCACC 3'
TRIM47hsv1-miR-H8beg:165end:185pic:3' CTTGGGGGACTGGGATATAT 5'& |.|||||| ||||||.| &5' GGACCCCCAGACCCTGT--- 3'
TRIM47hsv2-miR-H3beg:139end:162pic:3' GAGGGTTGGCGTCT-GAGGGTTT 5'& |.||.|| ||||||. &5' --CTCAGCCTTCCCTCTCCCAG- 3'
TRIM47kshv-miR-K12-10astarbeg:221end:241pic:3' TCACCACCATAGCGGGGTTCGG 5'& | ||| ||.||||||. &5' ---GCTGGGACAGCTCCAAGCT 3'
TRIM47kshv-miR-K12-12starbeg:47end:69pic:3' AGTTGGT--CCCGTGGGAGGGGGT 5'& || |||| |.||||..| &5' ----CCTCTGGGCCCTCTCCTTC- 3'
TRIM47kshv-miR-K12-12starbeg:140end:161pic:3' AGTTGGTCCCGTGGGAGGGGGT 5'& |||.|| |||||.|||| &5' TCAGCCTT----CCCTCTCCCA 3'
DNA & RNA Element - miRcode
Gene NameTypemicroRNASeed PositionSeed TypeTotal Cons%Tr Region
TRIM47High_conservedmiR-9/9abchr17:738711387-mer-m847CDS
TRIM47High_conservedmiR-138/138abchr17:738704778-mer293pUTR
TRIM47High_conservedmiR-150/5127chr17:738703537-mer-A1163pUTR
TRIM47High_conservedmiR-19abchr17:738728277-mer-A133CDS
TRIM47High_conservedmiR-214/761/3619-5pchr17:738705397-mer-m8113pUTR
TRIM47High_conservedmiR-214/761/3619-5pchr17:738709187-mer-m853CDS
TRIM47High_conservedmiR-216achr17:738710167-mer-A116CDS
TRIM47High_conservedmiR-216b/216b-5pchr17:738710167-mer-A116CDS
TRIM47High_conservedmiR-24/24ab/24-3pchr17:738715427-mer-m811CDS
TRIM47High_conservedmiR-24/24ab/24-3pchr17:738723987-mer-m829CDS
TRIM47High_conservedmiR-103a/107/107abchr17:738725207-mer-m84CDS
TRIM47High_conservedmiR-103a/107/107abchr17:738743977-mer-A142CDS
TRIM47High_conservedmiR-124/124ab/506chr17:738708047-mer-m84CDS
TRIM47High_conservedmiR-338/338-3pchr17:738720627-mer-m89CDS
TRIM47High_conservedmiR-490-3pchr17:738702987-mer-m8293pUTR
TRIM47Medium_conservedmiR-615-3pchr17:738743797-mer-m829CDS
TRIM47Medium_conservedmiR-134/3118chr17:738706807-mer-m818CDS
TRIM47Medium_conservedmiR-873chr17:738711577-mer-m842CDS
TRIM47Medium_conservedmiR-149chr17:738742507-mer-m816CDS
TRIM47Medium_conservedmiR-346chr17:738711667-mer-A144CDS
TRIM47Medium_conservedmiR-370chr17:738739717-mer-A147CDS
TRIM47Medium_conservedmiR-378/422a/378bcdefhichr17:738728207-mer-m813CDS
TRIM47Medium_conservedmiR-382chr17:738745467-mer-m858CDS
TRIM47Medium_conservedmiR-421chr17:738702497-mer-A1203pUTR
TRIM47Medium_conservedmiR-491-5pchr17:738709678-mer29CDS
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
TRIM47RAID00011498hsa-miR-6081miRNAMIMAT0023706TRIM47mRNA91107Prediction0.1828
TRIM47RAID00036388hsa-miR-3190-3pmiRNAMIMAT0022839TRIM47mRNA91107Prediction0.1828
TRIM47RAID00119916hsa-miR-661miRNAMIMAT0003324TRIM47mRNA91107Prediction0.1828
TRIM47RAID00243222hsa-miR-181c-5pmiRNAMIMAT0000258TRIM47mRNA91107CLIP-seq//Prediction0.6308
TRIM47RAID00273033hsa-miR-3153miRNAMIMAT0015026TRIM47mRNA91107Prediction0.1828
TRIM47RAID00457462hsa-miR-7851-3pmiRNAMIMAT0030426TRIM47mRNA91107Prediction0.1828
TRIM47RAID00550568hsa-miR-660-3pmiRNAMIMAT0022711TRIM47mRNA91107Prediction0.1828
TRIM47RAID00558689hsa-miR-5680miRNAMIMAT0022468TRIM47mRNA91107Prediction0.1828
TRIM47RAID00726991hsa-miR-6819-3pmiRNAMIMAT0027539TRIM47mRNA91107Prediction0.1828
TRIM47RAID01052490hsa-miR-95-3pmiRNAMIMAT0000094TRIM47mRNA91107CLIP-seq0.5483
TRIM47RAID01099317hsa-miR-4722-5pmiRNAMIMAT0019836TRIM47mRNA91107Prediction0.1828
TRIM47RAID01257240hsa-miR-138-5pmiRNAMIMAT0000430TRIM47mRNA91107Prediction0.1828
TRIM47RAID01356800hsa-miR-4505miRNAMIMAT0019041TRIM47mRNA91107Prediction0.1828
TRIM47RAID01540426hsa-miR-6877-3pmiRNAMIMAT0027655TRIM47mRNA91107Prediction0.1828
TRIM47RAID01627705hsa-miR-7977miRNAMIMAT0031180TRIM47mRNA91107Prediction0.1828
TRIM47RAID01770715hsa-miR-181d-5pmiRNAMIMAT0002821TRIM47mRNA91107CLIP-seq//Prediction0.6308
TRIM47RAID01844880hsa-miR-6770-5pmiRNAMIMAT0027440TRIM47mRNA91107Prediction0.1828
TRIM47RAID02022020hsa-miR-4713-5pmiRNAMIMAT0019820TRIM47mRNA91107Prediction0.1828
TRIM47RAID02124467hsa-miR-181a-5pmiRNAMIMAT0000256TRIM47mRNA91107CLIP-seq//Prediction0.6308
TRIM47RAID02302174hsa-miR-6733-5pmiRNAMIMAT0027367TRIM47mRNA91107Prediction0.1828
TRIM47RAID02663240hsa-miR-4646-5pmiRNAMIMAT0019707TRIM47mRNA91107Prediction0.1828
TRIM47RAID02672432hsa-miR-5787miRNAMIMAT0023252TRIM47mRNA91107Prediction0.1828
TRIM47RAID02721748hsa-miR-185-5pmiRNAMIMAT0000455TRIM47mRNA91107Prediction0.1828
TRIM47RAID02902085hsa-miR-490-3pmiRNAMIMAT0002806TRIM47mRNA91107CLIP-seq//Prediction0.6308
TRIM47RAID02979525hsa-miR-4455miRNAMIMAT0018977TRIM47mRNA91107Prediction0.1828
TRIM47RAID03179016hsa-miR-181b-5pmiRNAMIMAT0000257TRIM47mRNA91107CLIP-seq//Prediction0.6308
TRIM47RAID03288958hsa-miR-204-3pmiRNAMIMAT0022693TRIM47mRNA91107Prediction0.1828
TRIM47RAID03657874hsa-miR-7159-5pmiRNAMIMAT0028228TRIM47mRNA91107Prediction0.1828
TRIM47RAID03664920hsa-miR-7-5pmiRNAMIMAT0000252TRIM47mRNA91107Microarray0.5483
TRIM47RAID03909230hsa-miR-671-5pmiRNAMIMAT0003880TRIM47mRNA91107Prediction0.1828
TRIM47RAID03978266hsa-miR-6739-5pmiRNAMIMAT0027379TRIM47mRNA91107Prediction0.1828