DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome TRIM43 3'UTR bd1841a620 BA113691 NM_138800 chr2:95623892-95629198:+ TRIM43 5'UTR bd1841a620 CA178482 NM_138800 chr2:95621493-95628702:+

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004553 hsa-miR-7-1* 129868 TRIM43 auaccgucugacacUAAACAac |||||| cuauuaaauaaaaaAUUUGUaa 3 9 120 141 [hg19:2:96265441-96265462:+] 0.5216 120 0 -2.51 -0.1955 MIMAT0004554 hsa-miR-7-2* 129868 TRIM43 aauccaucugacccUAAACAac |||||| cuauuaaauaaaaaAUUUGUaa 3 9 120 141 [hg19:2:96265441-96265462:+] 0.5216 120 0 -2.51 -0.1937 MIMAT0002849 hsa-miR-524-5p 129868 TRIM43 cucuuucacgaagggAAACAUc |||||| cuauuaaauaaaaaaUUUGUAa 2 8 120 141 [hg19:2:96265441-96265462:+] 0.5216 120 6 -5.13 -0.2746 MIMAT0002855 hsa-miR-520d-5p 129868 TRIM43 cuuucccgaagggAAACAUc |||||| auuaaauaaaaaaUUUGUAa 2 8 122 141 [hg19:2:96265443-96265462:+] 0.5216 120 6 -6.15 -0.2794 MIMAT0004777 hsa-miR-513a-3p 129868 TRIM43 ggaagagucuuuccacUUUAAAu |||||| auugcuauuaaauaaaAAAUUUg 2 8 116 138 [hg19:2:96265437-96265459:+] 0.5216 120 6 -7.08 -0.1171 MIMAT0003223 hsa-miR-559 129868 TRIM43 aaaaccacguauaaAUGAAAu |||||| uucaggcuuuuuugUACUUUa 2 8 80 100 [hg19:2:96265401-96265421:+] 0.5216 120 6 -7.68 -0.1235 MIMAT0003238 hsa-miR-573 129868 TRIM43 gacuaGUCAAUGUGUAGUGAAGUc :| || :::|||||||| uuuugUACUUUAGUGUCACUUCAu 2 20 89 112 [hg19:2:96265410-96265433:+] 0.5216 155 7 -13.78 -1.2239 MIMAT0004798 hsa-miR-548b-5p 129868 TRIM43 ccgguuuugguguuaAUGAAAa |||||| guucaggcuuuuuugUACUUUa 2 8 79 100 [hg19:2:96265400-96265421:+] 0.5216 120 6 -7.03 -0.1235 MIMAT0003264 hsa-miR-596 129868 TRIM43 gggcuccucggcccGUCCGAa |||||| gaaaucauacuguuCAGGCUu 2 8 68 88 [hg19:2:96265389-96265409:+] 0.5216 120 6 -18.44 -0.1104 MIMAT0004803 hsa-miR-548a-5p 129868 TRIM43 ccauuuugagcguuaAUGAAAa |||||| guucaggcuuuuuugUACUUUa 2 8 79 100 [hg19:2:96265400-96265421:+] 0.5216 120 6 -7.08 -0.1235 MIMAT0004806 hsa-miR-548c-5p 129868 TRIM43 ccguuuuuggcguuaAUGAAAa |||||| guucaggcuuuuuugUACUUUa 2 8 79 100 [hg19:2:96265400-96265421:+] 0.5216 120 6 -7.29 -0.1235 MIMAT0003292 hsa-miR-623 129868 TRIM43 ugggUUGUCGGGGACGUUCCCUa ||| | : | ||||||| ugggAACUCCAUAUACAAGGGAg 2 20 25 47 [hg19:2:96265346-96265368:+] 0.5216 151 7 -16.35 -0.5245 MIMAT0003303 hsa-miR-633 129868 TRIM43 aaauaacaccaucuAUGAUAAUc |:|||||| ucacuucauuuuauUGCUAUUAa 2 10 104 126 [hg19:2:96265425-96265447:+] 0.5216 129 6 -4.85 -0.6383 MIMAT0003313 hsa-miR-643 129868 TRIM43 gauggaCUCGA-UCGUAUGUUCa || || :||||||| guuuggGAACUCCAUAUACAAGg 2 17 22 44 [hg19:2:96265343-96265365:+] 0.5216 143 7 -13.93 -0.3919 MIMAT0004812 hsa-miR-548d-5p 129868 TRIM43 ccguuuuugguguuaAUGAAAa |||||| guucaggcuuuuuugUACUUUa 2 8 79 100 [hg19:2:96265400-96265421:+] 0.5216 120 6 -5.84 -0.1235 MIMAT0005799 hsa-miR-1283 129868 TRIM43 ucuuucgcgaaaggAAACAUcu |||||| uauuaaauaaaaaaUUUGUAaa 3 9 121 142 [hg19:2:96265442-96265463:+] 0.5216 120 0 -3.78 -0.1210 MIMAT0005864 hsa-miR-1201 129868 TRIM43 agucucguacacaaauuAGUCCGa |||||| caaagaaaucauacuguUCAGGCu 2 8 64 87 [hg19:2:96265385-96265408:+] 0.5216 120 6 -13.63 -0.1195 MIMAT0005875 hsa-miR-548j 129868 TRIM43 ugguuucuggcguuaAUGAAAa |||||| guucaggcuuuuuugUACUUUa 2 8 79 100 [hg19:2:96265400-96265421:+] 0.5216 120 6 -7.48 -0.1223 MIMAT0005882 hsa-miR-548k 129868 TRIM43 ucGUUUUAGGCGUUCAUGAAAa ||:: |:: : ||||||| uuCAGGCUUU-UUUGUACUUUa 2 21 80 100 [hg19:2:96265401-96265421:+] 0.5216 142 7 -8.70 -1.2115 MIMAT0005889 hsa-miR-548l 129868 TRIM43 cuguUUUGGGCGUUUAUGAAAa |::|:: : :|||||| guucAGGCUUUUUUGUACUUUa 2 19 79 100 [hg19:2:96265400-96265421:+] 0.5216 130 6 -7.89 -0.1235 MIMAT0005928 hsa-miR-548h 129868 TRIM43 cuguuuuuggcgcuaAUGAAAa |||||| guucaggcuuuuuugUACUUUa 2 8 79 100 [hg19:2:96265400-96265421:+] 0.5216 120 6 -5.00 -0.1235 MIMAT0005934 hsa-miR-548p 129868 TRIM43 uuuCAUUGACGUCAAA-AACGAu || ||| || ||| ||||| aguGUCACUUCAUUUUAUUGCUa 2 20 100 122 [hg19:2:96265421-96265443:+] 0.5216 135 0 -11.41 -1.2933 MIMAT0005935 hsa-miR-548i 129868 TRIM43 ccguuuuaggcguuaAUGAAAa |||||| guucaggcuuuuuugUACUUUa 2 8 79 100 [hg19:2:96265400-96265421:+] 0.5216 120 6 -8.08 -0.1235 MIMAT0015037 hsa-miR-3163 129868 TRIM43 caGAAUGACG--GGAGUAAAAUAu :||| ||: |:||||||||| acUUUAGUGUCACUUCAUUUUAUu 2 21 95 118 [hg19:2:96265416-96265439:+] 0.5216 167 7 -15.90 -0.7697 MIMAT0015060 hsa-miR-548w 129868 TRIM43 uccguuuuuggcgucaAUGAAAa |||||| uguucaggcuuuuuugUACUUUa 2 8 78 100 [hg19:2:96265399-96265421:+] 0.5216 120 6 -8.67 -0.1235 MIMAT0016848 hsa-miR-4293 129868 TRIM43 gacaAGGAC-AGUCCGAc | ||| ||||||| aucaUACUGUUCAGGCUu 2 14 71 88 [hg19:2:96265392-96265409:+] 0.5216 148 7 -15.56 -1.0864 MIMAT0016912 hsa-miR-4282 129868 TRIM43 aggaccuacgUUUAAAau |||||| auuaaauaaaAAAUUUgu 3 9 122 139 [hg19:2:96265443-96265460:+] 0.5216 120 0 -0.85 -0.2390 MIMAT0016917 hsa-miR-4287 129868 TRIM43 uuucacgggaGUUCCCUCu |||||||| acuccauauaCAAGGGAGc 2 10 30 48 [hg19:2:96265351-96265369:+] 0.5216 145 7 -16.27 -0.2327 MIMAT0000436 hsa-miR-144 129868 TRIM43 ucauguagUAGAUAUGACAu ||| ||||||| acaaagaaAUC-AUACUGUu 2 13 63 81 [hg19:2:96265384-96265402:+] 0.5216 146 7 -10.42 -0.6567 MIMAT0003339 hsa-miR-421 129868 TRIM43 cgCGGGUUAAUUACAGACAACUa |||| || | ||||||| gaGCCC--UUCA---CUGUUGAu 2 22 45 62 [hg19:2:96265366-96265383:+] 0.5216 142 7 -16.00 -0.7348 MIMAT0003389 hsa-miR-542-3p 129868 TRIM43 aaagucaauaguuagACAGUGu |||||| uuuuuuguacuuuagUGUCACu 2 8 87 108 [hg19:2:96265408-96265429:+] 0.5216 120 6 -7.87 -0.1201

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G035843 TRIM43 Homo sapiens 129868

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End TRIM43 1 205 100 5.01 + chr2 96265321 96265526

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile TRIM43 hsa-miR-421 beg:44 end:63 pic:3' CGCGGGTTAATTACAGACAACTA 5'& |||| |||||||| &5' --GCCCTTCA-----CTGTTGAT 3' TRIM43 ebv-miR-BART11-5p beg:7 end:28 pic:3' GTTGATCGCGTGGTTTGACAGACT 5'& || ||. |||||.||. &5' -----AGAAAACTT-ACTGTTTGG 3' TRIM43 hcmv-miR-UL112 beg:94 end:110 pic:3' TCGGACCTAGAGTGGCAGTGAA 5'& .|.| .||||||| &5' ---------TTTAGTGTCACTT 3' TRIM43 hsa-miR-203 beg:96 end:118 pic:3' GATCACCAG-GATTTGTAAAGTG 5'& |||| ||| || |||||.|. &5' -TAGT-GTCACTT--CATTTTAT 3' TRIM43 hsa-miR-2052 beg:12 end:32 pic:3' TGTAATGACAATAGTTTTGT 5'& || |||||||| | ..||| &5' AC-TTACTGTT-TGGGAAC- 3' TRIM43 hsa-miR-3158 beg:39 end:53 pic:3' CAGGACGTCTCTCCTTCGGGAA 5'& |||.||||||| &5' -----------AGGGAGCCCTT 3' TRIM43 hsa-miR-3163 beg:96 end:118 pic:3' CAGAATGACG--GGAGTAAAATAT 5'& .||| ||. |.||||||||| &5' --TTTAGTGTCACTTCATTTTAT- 3' TRIM43 hsa-miR-3184 beg:40 end:55 pic:3' TTTTCGAGCCAGACTC-CGGGGAGT 5'& |.| ||||.||| &5' -------------GGGAGCCCTTCA 3' TRIM43 hsa-miR-371-5p beg:13 end:29 pic:3' TCACGGGGGTGTCAAACTCA 5'& |..|| |||||.| &5' ------CTTACTGTTTGGG- 3' TRIM43 hsa-miR-4288 beg:23 end:43 pic:3' CCTTTGAGTCGTCTGTT 5'& ||.||||| .| |||| &5' GGGAACTCCATATACAA 3' TRIM43 hsa-miR-454 beg:74 end:98 pic:3' TGGGATA--TTCGTTATAACGTGAT 5'& ||.| |.|| | |||.||| &5' ---CTGTTCAGGCTTTTTTGTACT- 3' TRIM43 hsa-miR-488star beg:18 end:29 pic:3' AACTCTCACGGTAATAGACCC 5'& |.|.|||| &5' -------------TGTTTGGG 3' TRIM43 hsa-miR-520d-5p beg:81 end:96 pic:3' CTTTCCCGAAGGGAAACATC 5'& |||||. |||||| &5' -----GGCTTT--TTTGTA- 3' TRIM43 hsa-miR-573 beg:95 end:117 pic:3' GACTAGTCAATGTGTAGTGAAGTC 5'& |.||| ||| |||.||.| &5' ----TTAGTGTCACTTCATTTTA- 3' TRIM43 hsa-miR-623 beg:28 end:47 pic:3' TGGGTTGTCGGGGAC---GTTCCCTA 5'& |.|| ||||||| &5' ---------CTCCATATACAAGGGA- 3' TRIM43 hsa-miR-7 beg:60 end:83 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& |||| .||||||. | ||| &5' ACAAAGAAATCATAC-TGTTC-- 3' TRIM43 sv40-miR-S1-5p beg:41 end:55 pic:3' TTCCGAGTAAAGTC-CGGGGAGT 5'& .| ||||.||| &5' ------------GGAGCCCTTCA 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region TRIM43 High_conserved miR-138/138ab chr2:96257814 7-mer-A1 2 5pUTR TRIM43 High_conserved miR-141/200a chr2:96265156 7-mer-m8 4 CDS TRIM43 High_conserved miR-142-3p chr2:96264995 7-mer-m8 13 CDS TRIM43 High_conserved miR-142-3p chr2:96265166 7-mer-A1 0 CDS TRIM43 High_conserved miR-144 chr2:96265402 7-mer-m8 7 3pUTR TRIM43 High_conserved miR-148ab-3p/152 chr2:96257823 7-mer-m8 2 5pUTR TRIM43 High_conserved miR-150/5127 chr2:96263087 8-mer 13 CDS TRIM43 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr2:96263646 7-mer-m8 4 CDS TRIM43 High_conserved miR-181abcd/4262 chr2:96265237 7-mer-m8 11 CDS TRIM43 High_conserved miR-196abc chr2:96259837 7-mer-m8 9 CDS TRIM43 High_conserved miR-199ab-5p chr2:96263697 7-mer-A1 7 CDS TRIM43 High_conserved miR-199ab-5p chr2:96265312 7-mer-m8 4 CDS TRIM43 High_conserved miR-203 chr2:96265131 8-mer 4 CDS TRIM43 High_conserved miR-216b/216b-5p chr2:96262067 7-mer-m8 7 CDS TRIM43 High_conserved miR-218/218a chr2:96265073 7-mer-A1 7 CDS TRIM43 High_conserved miR-22/22-3p chr2:96260171 7-mer-m8 7 CDS TRIM43 High_conserved miR-26ab/1297/4465 chr2:96262122 7-mer-A1 4 CDS TRIM43 High_conserved miR-27abc/27a-3p chr2:96257826 7-mer-m8 4 5pUTR TRIM43 High_conserved miR-27abc/27a-3p chr2:96263666 7-mer-A1 11 CDS TRIM43 High_conserved miR-103a/107/107ab chr2:96263648 7-mer-A1 2 CDS TRIM43 High_conserved miR-103a/107/107ab chr2:96264958 7-mer-A1 9 CDS TRIM43 High_conserved miR-425/425-5p/489 chr2:96262157 8-mer 4 CDS TRIM43 High_conserved miR-128/128ab chr2:96257825 8-mer 4 5pUTR TRIM43 Medium_conserved miR-504/4725-5p chr2:96264974 7-mer-m8 4 CDS TRIM43 Medium_conserved miR-542-3p chr2:96259852 7-mer-m8 7 CDS TRIM43 Medium_conserved miR-758 chr2:96260146 7-mer-A1 4 CDS TRIM43 Medium_conserved miR-873 chr2:96260030 7-mer-A1 11 CDS TRIM43 Medium_conserved miR-149 chr2:96264970 7-mer-m8 4 CDS TRIM43 Medium_conserved miR-326/330/330-5p chr2:96262084 7-mer-A1 4 CDS TRIM43 Medium_conserved miR-329/329ab/362-3p chr2:96265197 7-mer-m8 20 CDS TRIM43 Medium_conserved miR-335/335-5p chr2:96265139 7-mer-A1 7 CDS TRIM43 Medium_conserved miR-342-3p chr2:96257827 7-mer-A1 4 5pUTR TRIM43 Medium_conserved miR-342-3p chr2:96264901 7-mer-A1 13 CDS TRIM43 Medium_conserved miR-342-3p chr2:96265225 7-mer-m8 11 CDS TRIM43 Medium_conserved miR-421 chr2:96265383 7-mer-m8 7 3pUTR TRIM43 Medium_conserved miR-125a-3p/1554 chr2:96259816 7-mer-m8 7 CDS TRIM43 Medium_conserved miR-486-5p/3107 chr2:96263710 7-mer-m8 2 CDS

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score TRIM43 RAID00522867 hsa-miR-144-3p miRNA MIMAT0000436 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID00714713 hsa-miR-542-3p miRNA MIMAT0003389 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID00750062 hsa-miR-573 miRNA MIMAT0003238 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID00807562 hsa-miR-3117-5p miRNA MIMAT0019197 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID00831238 hsa-miR-4703-5p miRNA MIMAT0019801 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID00913466 hsa-miR-421 miRNA MIMAT0003339 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID01294273 hsa-miR-8054 miRNA MIMAT0030981 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID01465953 hsa-miR-6780b-3p miRNA MIMAT0027573 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID01622264 hsa-miR-3942-5p miRNA MIMAT0018358 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID01836891 hsa-miR-548av-5p miRNA MIMAT0022303 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID02832053 hsa-miR-548k miRNA MIMAT0005882 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID03129574 hsa-miR-4766-3p miRNA MIMAT0019918 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID03332739 hsa-miR-4293 miRNA MIMAT0016848 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID03360644 hsa-miR-3616-5p miRNA MIMAT0017995 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID03604463 hsa-miR-3662 miRNA MIMAT0018083 TRIM43 mRNA 129868 Prediction 0.1828 TRIM43 RAID03723349 hsa-miR-6844 miRNA MIMAT0027589 TRIM43 mRNA 129868 Prediction 0.1828