DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome USP43 3'UTR 2e8cbea6e6 NM_153210 chr17:9573033-9573729:+ USP43 3'UTR 3b445adfec BA117711 NM_153210 chr17:9573033-9573729:+ USP43 3'UTR f6bab7a57c NM_153210 chr17:9573033-9573729:+ USP43 5'UTR 3b445adfec CA184874 NM_153210 chr17:9489209-9520887:+

DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence USP43 ATTTA 1-3372 3659-3663;3934-3938;4020-4024 USP43 WWATTTAWW 1-3372 3932-3940;4018-4026 USP43 WWWATTTAWWW 1-3372 3931-3941;4017-4027 USP43 WWWWATTTAWWWW 1-3372 4016-4028

DNA & RNA Element - circBase circRNA ID Chrom Start End Strand hsa_circ_0042069 chr17 9578207 9580198 + hsa_circ_0042068 chr17 9559719 9615449 + hsa_circ_0042073 chr17 9615284 9615449 + hsa_circ_0042071 chr17 9590114 9615449 + hsa_circ_0042067 chr17 9559719 9570068 + hsa_circ_0042072 chr17 9613272 9615449 + hsa_circ_0042070 chr17 9580062 9605017 +

DNA & RNA Element - CircNet Circ ID GITPosition Express Symbol Entrez Category Strand Refered Name hsa-circ-USP43-antisense.2 NM_153210Tchr17:9548955-9549134 expressed USP43 124739 protein-coding - not_available hsa-circ-USP43-overlap.2 NM_153210Tchr17:9596443-9597569 expressed USP43 124739 protein-coding + hsa_circ_0107848 hsa-circ-USP43.1 NM_001267576Tchr17:9590114-9615449 expressed USP43 124739 protein-coding + hsa_circ_0042071 hsa-circ-USP43.10 NM_153210Tchr17:9615284-9615449 expressed USP43 124739 protein-coding + hsa_circ_0042073 hsa-circ-USP43.18 NM_153210Tchr17:9578207-9580198 expressed USP43 124739 protein-coding + hsa_circ_0042069 hsa-circ-USP43.19 NM_153210Tchr17:9580062-9605017 expressed USP43 124739 protein-coding + hsa_circ_0042070 hsa-circ-USP43.20 NM_001267576Tchr17:9603488-9605002 expressed USP43 124739 protein-coding x chr17:9603488-9605002_HeLa_S3_poly(A)- hsa-circ-USP43.21 NM_153210Tchr17:9559719-9596547 expressed USP43 124739 protein-coding + hsa_circ_0107843 hsa-circ-USP43.23 NM_153210Tchr17:9578207-9590226 expressed USP43 124739 protein-coding x chr17:9578207-9590226_H1_poly(A)- hsa-circ-USP43.26 NM_001267576Tchr17:9559719-9559851 expressed USP43 124739 protein-coding + not_available hsa-circ-USP43.28 NM_001267576Tchr17:9580062-9583683 expressed USP43 124739 protein-coding x chr17:9580062-9583683_H1_poly(A)- hsa-circ-USP43.29 NM_153210Tchr17:9580062-9596547 expressed USP43 124739 protein-coding x chr17:9580062-9596547_HepG2_poly(A)- hsa-circ-USP43.3 NM_153210Tchr17:9590114-9615449 expressed USP43 124739 protein-coding + hsa_circ_0042071 hsa-circ-USP43.31 NM_153210Tchr17:9578207-9596547 expressed USP43 124739 protein-coding + hsa_circ_0107844 hsa-circ-USP43.33 NM_153210Tchr17:9578207-9583683 expressed USP43 124739 protein-coding + not_available hsa-circ-USP43.5 NM_001267576Tchr17:9559719-9615449 expressed USP43 124739 protein-coding + hsa_circ_0042068 hsa-circ-USP43.6 NM_001267576Tchr17:9613272-9615449 expressed USP43 124739 protein-coding + hsa_circ_0042072 hsa-circ-USP43.8 NM_153210Tchr17:9559719-9615449 expressed USP43 124739 protein-coding + hsa_circ_0042068 hsa-circ-USP43.9 NM_153210Tchr17:9559719-9570068 none USP43 124739 protein-coding + hsa_circ_0042067

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004481 hsa-let-7a* 124739 USP43 cuUUCUGUCA--UCUAACAUAuc || |:| | | ||||||| uuAAUAUAUUAAAAAUUGUAUua 3 20 564 586 [hg19:17:9632871-9632893:+] 0.6452 134 0 -4.95 -0.4846 MIMAT0010195 hsa-let-7a-2* 124739 USP43 ccuuucgauccuccgACAUGUc |||||| uaaauaugagaucuaUGUACAa 2 8 651 672 [hg19:17:9632958-9632979:+] 0.5644 120 6 -7.58 -0.3424 MIMAT0004482 hsa-let-7b* 124739 USP43 cccuuccgucauccAACAUAuc |||||| uaauauauuaaaaaUUGUAUua 3 9 565 586 [hg19:17:9632872-9632893:+] 0.6452 120 0 -3.67 -0.4915 MIMAT0004486 hsa-let-7f-1* 124739 USP43 cccuuccguUAUCUAACAUAuc | | ||||||| uaauauauuAAAAAUUGUAUua 3 14 565 586 [hg19:17:9632872-9632893:+] 0.6452 129 0 -4.95 -0.4846 MIMAT0004489 hsa-miR-16-1* 124739 USP43 agUCGUCGUGUCAAUUAUGACc | :: ||:: ||||||| ucAAUGUCAUGUCAAAUACUGu 2 21 345 366 [hg19:17:9632652-9632673:+] 0.5176 144 7 -10.54 -0.7121 MIMAT0004513 hsa-miR-101* 124739 USP43 ucguagucgugacacUAUUGAc |||||| caagguauuuuaaaaAUAACUa 2 8 595 616 [hg19:17:9632902-9632923:+] 0.6797 120 6 -5.56 -0.6448 MIMAT0004518 hsa-miR-16-2* 124739 USP43 auUUCGUCGUGU-CA-UUAUAAcc :|| ||: || || |||||| cuGAG-AGUUCAGGUGAAUAUUua 3 21 544 566 [hg19:17:9632851-9632873:+] 0.6452 132 0 -9.35 -0.1620 MIMAT0004518 hsa-miR-16-2* 124739 USP43 auuucgucgUGUCAUUAUAAcc | | |||||| uggacuuaaAGAAAAAUAUUuu 3 14 408 429 [hg19:17:9632715-9632736:+] 0.4437 121 0 -2.61 -0.1138 MIMAT0004560 hsa-miR-183* 124739 USP43 aaUACCGGGAAGCCAUUAAGUg | | || ||: |||||:| aaAAGUCCAUUUUUUAAUUUAa 2 21 632 653 [hg19:17:9632939-9632960:+] 0.6220 140 0 -9.21 -0.1858 MIMAT0009198 hsa-miR-224* 124739 USP43 acaucagugaucccgUGGUAAAa ||:|||| gguauuuuaaaaauaACUAUUUu 2 9 598 620 [hg19:17:9632905-9632927:+] 0.6797 124 0 -6.76 -0.1048 MIMAT0009198 hsa-miR-224* 124739 USP43 acaucagugaucccguGGUAAAa |||||| auacuagaaaaaaaguCCAUUUu 2 8 622 644 [hg19:17:9632929-9632951:+] 0.6220 120 6 -11.87 -0.3403 MIMAT0004584 hsa-let-7g* 124739 USP43 cguuccgucaccggACAUGUc |||||| aaauaugagaucuaUGUACAa 2 8 652 672 [hg19:17:9632959-9632979:+] 0.5644 120 6 -6.98 -0.3424 MIMAT0000444 hsa-miR-126* 124739 USP43 gcGCAUGGUUUUCAUUAUUac :||| ||| |||||| uaUGUA-CAAUUUUAAUAAaa 3 20 664 683 [hg19:17:9632971-9632990:+] 0.5781 133 0 -6.89 -0.2024 MIMAT0004615 hsa-miR-195* 124739 USP43 ccUCGUCGUGU-CGGUUAUAAcc || ||: || |: |||||| ugAG-AGUUCAGGUGAAUAUUua 3 21 545 566 [hg19:17:9632852-9632873:+] 0.6452 133 0 -11.23 -0.1605 MIMAT0004615 hsa-miR-195* 124739 USP43 ccucgucgugucggUUAUAAcc |||||| uggacuuaaagaaaAAUAUUuu 3 9 408 429 [hg19:17:9632715-9632736:+] 0.4437 120 0 -5.74 -0.1161 MIMAT0004675 hsa-miR-219-2-3p 124739 USP43 uguCUACAGGUCGGUGUUAAGa || ||:| :||||||: uauGAGAUCUAUGUACAAUUUu 2 20 655 676 [hg19:17:9632962-9632983:+] 0.5644 139 0 -11.70 -0.1539 MIMAT0004677 hsa-miR-34c-3p 124739 USP43 ggaccggcacacCAAUCACUAa | ||||||| aaacaaaagaauGAUAGUGAUg 2 11 481 502 [hg19:17:9632788-9632809:+] 0.4832 142 7 -8.19 -0.7009 MIMAT0000705 hsa-miR-362-5p 124739 USP43 ugAGUGUGGAUCC--AAGGUUCC-UAa |:::|:: | | ||:||||| || aaUUGUAUUAAAGUUUUUCAAGGUAUu 2 23 577 603 [hg19:17:9632884-9632910:+] 0.6624 121 0 -10.92 -1.2781 MIMAT0009199 hsa-miR-365* 124739 USP43 ugucgacggggacUUUCAGGga ||||||| ugauacuagaaaaAAAGUCCau 3 10 620 641 [hg19:17:9632927-9632948:+] 0.6220 125 0 -11.03 -0.3733 MIMAT0000714 hsa-miR-302b* 124739 USP43 cuuucgugaagguacAAUUUCa |||||| uuuuaaauuguggacUUAAAGa 2 8 398 419 [hg19:17:9632705-9632726:+] 0.3831 120 6 -3.03 -0.1534 MIMAT0000714 hsa-miR-302b* 124739 USP43 cuuucgugaagguacAAUUUCa |||||| auauuaaaaauuguaUUAAAGu 2 8 569 590 [hg19:17:9632876-9632897:+] 0.6624 120 6 -4.81 -0.2110 MIMAT0004685 hsa-miR-302d* 124739 USP43 cguucacggagguacAAUUUCa |||||| uuuuaaauuguggacUUAAAGa 2 8 398 419 [hg19:17:9632705-9632726:+] 0.3831 120 6 -3.85 -0.1580 MIMAT0004685 hsa-miR-302d* 124739 USP43 cguucacggagguacAAUUUCa |||||| auauuaaaaauuguaUUAAAGu 2 8 569 590 [hg19:17:9632876-9632897:+] 0.6624 120 6 -4.89 -0.2189 MIMAT0000721 hsa-miR-369-3p 124739 USP43 uuUCUAGUUGGU-ACAUAAUaa | ||:|| | ||||||| auAUAUUAAAAAUUGUAUUAaa 3 20 567 588 [hg19:17:9632874-9632895:+] 0.6624 138 0 -6.51 -0.5124 MIMAT0000725 hsa-miR-373* 124739 USP43 ccuuucgcgggGGUAAAACUca |:||||||| uuuaaaaauaaCUAUUUUGAua 3 12 603 624 [hg19:17:9632910-9632931:+] 0.6797 131 0 -9.06 -0.3672 MIMAT0000751 hsa-miR-330-3p 124739 USP43 agaGACGU-CCGGCACACGAAACg ||||| ::| |||||||| uucCUGCAUCAUUGGGUGCUUUGc 2 21 200 223 [hg19:17:9632507-9632530:+] 0.5082 159 7 -24.14 -0.1650 MIMAT0004703 hsa-miR-335* 124739 USP43 ccaguccucGUUAU-UACUUUUu :|||| || |||| gugaauauuUAAUAUAUUAAAAa 2 14 556 578 [hg19:17:9632863-9632885:+] 0.6452 120 0 -2.18 -0.1984 MIMAT0000771 hsa-miR-325 124739 USP43 ugugaaugaccuguggAUGAUCc |||||| aaaauaacuauuuugaUACUAGa 2 8 607 629 [hg19:17:9632914-9632936:+] 0.6797 120 6 -7.78 -0.6426 MIMAT0002170 hsa-miR-412 124739 USP43 ugCCGAUCACCUGGUCCACUUca ||||: | :|||||||| auGGCUGAGAGUUCAGGUGAAua 3 22 540 562 [hg19:17:9632847-9632869:+] 0.6452 145 0 -23.14 -0.3817 MIMAT0002805 hsa-miR-489 124739 USP43 cgacGGCAUAUACACUACAGUg :| | |||| |||||| agaaUCUUCAAUGUCAUGUCAa 2 19 338 359 [hg19:17:9632645-9632666:+] 0.5176 130 6 -11.15 -0.1347 MIMAT0004764 hsa-miR-490-5p 124739 USP43 uggguggaccucUAGGUACc :|||||| uaauaaaauccuGUCCAUG- 2 9 676 694 [hg19:17:9632983-9633001:+] 0.5781 124 6 -12.55 -0.1023 MIMAT0004766 hsa-miR-146b-3p 124739 USP43 ggucuugacucagguGUCCCGu |||||| caguauuaccaguuuCAGGGCa 2 8 256 277 [hg19:17:9632563-9632584:+] 0.5625 120 6 -19.97 -0.1384 MIMAT0002813 hsa-miR-493* 124739 USP43 uuacuuucggauGGUACAUGUu |:||||||| uaaauaugagauCUAUGUACAa 2 11 651 672 [hg19:17:9632958-9632979:+] 0.5644 146 7 -16.45 -1.2764 MIMAT0002868 hsa-miR-522 124739 USP43 ugUGAGAUUUCCCUUGGUAAAa |:|:|||| |||:|||| guAUUUUAAAAAUAACUAUUUu 2 21 599 620 [hg19:17:9632906-9632927:+] 0.6797 152 0 -12.75 -0.1007 MIMAT0002868 hsa-miR-522 124739 USP43 ugugagauuucccuuGGUAAAa |||||| uacuagaaaaaaaguCCAUUUu 2 8 623 644 [hg19:17:9632930-9632951:+] 0.6220 120 6 -10.31 -0.3348 MIMAT0004777 hsa-miR-513a-3p 124739 USP43 ggaaGAGUCUU---UCCACUU-UAAAu || |||: ||||||| |||| auggCUGAGAGUUCAGGUGAAUAUUUa 2 20 540 566 [hg19:17:9632847-9632873:+] 0.6452 130 0 -18.77 -1.1991 MIMAT0002880 hsa-miR-508-3p 124739 USP43 agaugagguuuuccgAUGUUAGu ||||||: aauaugagaucuaugUACAAUUu 2 9 653 675 [hg19:17:9632960-9632982:+] 0.5644 124 0 -9.29 -0.1138 MIMAT0002888 hsa-miR-532-5p 124739 USP43 ugccAGGAUGUGAGUUCC--GUAc ||| |||| ||||| ||| gacuUCCAACACCCAAGGUCCAUa 2 19 157 180 [hg19:17:9632464-9632487:+] 0.4539 122 0 -15.92 -0.7293 MIMAT0004784 hsa-miR-455-3p 124739 USP43 cacauauacgGGUACCUGAcg :::|||||| uuuuuuuaaaUUGUGGACUua 3 12 395 415 [hg19:17:9632702-9632722:+] 0.3831 123 0 -8.59 -0.1442 MIMAT0003220 hsa-miR-556-5p 124739 USP43 gaGUAUAAUGUUACUCGAGUAg || | |::|: ||||||| agCA-ACUGUAGGCAGCUCAUg 2 21 49 69 [hg19:17:9632356-9632376:+] 0.5320 150 7 -11.64 -0.1321 MIMAT0003222 hsa-miR-558 124739 USP43 uaaaacCAUGUCGUCGAGu ||| :||||||| gcaacuGUA-GGCAGCUCa 2 14 50 67 [hg19:17:9632357-9632374:+] 0.5320 147 7 -16.52 -0.6677 MIMAT0003223 hsa-miR-559 124739 USP43 aaaacCACGU-AUAAAUGAAAu || || | |||| ||| aaaaaGUCCAUUUUUUAAUUUa 2 17 631 652 [hg19:17:9632938-9632959:+] 0.6220 123 0 -4.11 -0.1283 MIMAT0003234 hsa-miR-569 124739 USP43 ugaaaGGUCCUAAGUA-AUUGa ||| |:| ||| |||| aacacCCAAGGUCCAUAUAACc 2 17 164 185 [hg19:17:9632471-9632492:+] 0.4539 124 0 -9.49 -0.1277 MIMAT0003247 hsa-miR-582-5p 124739 USP43 ucAUUGACCAACUUGUUGACAUu |||: || || ||:|||| uuUAAUAUAUU-AAAAAUUGUAu 2 22 563 584 [hg19:17:9632870-9632891:+] 0.6452 139 0 -4.82 -0.1440 MIMAT0004797 hsa-miR-582-3p 124739 USP43 ccAAGUCA-ACAAGUUGGUCAAu || :|| || : ||||||| uaUUGGGUCAGUAUUACCAGUUu 2 21 248 270 [hg19:17:9632555-9632577:+] 0.5625 151 7 -17.81 -0.6526 MIMAT0003251 hsa-miR-548a-3p 124739 USP43 cgUUUUCAU-UAACGGUCAAAAc |||| |: ||| |||||| uaAAAAUUGUAUU-AAAGUUUUu 2 21 573 594 [hg19:17:9632880-9632901:+] 0.6624 125 6 -7.17 -0.2192 MIMAT0003252 hsa-miR-586 124739 USP43 ccuggAUUUUU--AUGUUAC-GUAu |||:|| | ||||| ||| uuuaaUAAGAAUCUUCAAUGUCAUg 2 18 331 355 [hg19:17:9632638-9632662:+] 0.5176 124 0 -11.59 -0.7754 MIMAT0003277 hsa-miR-609 124739 USP43 ucucuacucucuUUGUGGGa ||||||| aucuagacuuccAACACCCa 2 9 152 171 [hg19:17:9632459-9632478:+] 0.4539 140 7 -10.24 -0.2939 MIMAT0003284 hsa-miR-616* 124739 USP43 uucagugacUUCCCAAAACUca || |||||| uuuaaaaauAACUAUUUUGAua 3 14 603 624 [hg19:17:9632910-9632931:+] 0.6797 121 0 -1.91 -0.3585 MIMAT0003285 hsa-miR-548c-3p 124739 USP43 cgUUUUCAUUAACUCUAAAAAc |||| || || |||||| agAAAAAUAUUU--UAUUUUUa 2 21 417 436 [hg19:17:9632724-9632743:+] 0.4437 129 6 -2.92 -0.1357 MIMAT0003285 hsa-miR-548c-3p 124739 USP43 cguuuucauuaacucUAAAAAc |||||| cuagaaaaaaaguccAUUUUUu 2 8 625 646 [hg19:17:9632932-9632953:+] 0.6220 120 6 -3.63 -0.2330 MIMAT0003292 hsa-miR-623 124739 USP43 ugGGUUGUCGGGGACGUUCCCUa ::|| ||::::| ||||| | uaUUAA-AGUUUUU-CAAGGUAu 2 22 582 602 [hg19:17:9632889-9632909:+] 0.6624 121 0 -12.55 -0.2056 MIMAT0003297 hsa-miR-628-3p 124739 USP43 agcugacggugagaAUGAUCu |||||| aauaacuauuuugaUACUAGa 2 8 609 629 [hg19:17:9632916-9632936:+] 0.6797 120 6 -13.97 -0.6500 MIMAT0003298 hsa-miR-629* 124739 USP43 cgacccgaaugCAACCCUCUug | ||||||| uagcaaagagaGAUGGGAGAua 3 12 517 538 [hg19:17:9632824-9632845:+] 0.5536 127 0 -11.54 -0.1111 MIMAT0003303 hsa-miR-633 124739 USP43 aaAUAACACCAUCUA-UGAUAAuc |||| | | || |||||| ggUAUU-UUAAAAAUAACUAUUuu 3 22 598 620 [hg19:17:9632905-9632927:+] 0.6797 130 0 -4.03 -0.2938 MIMAT0004812 hsa-miR-548d-5p 124739 USP43 ccgUUUUUGGU-GUUAAUGAAAa |||: ||| : ||| ||| aaaAAAGUCCAUUUUUUAAUUUa 2 20 630 652 [hg19:17:9632937-9632959:+] 0.6220 122 0 -5.84 -0.1296 MIMAT0003323 hsa-miR-548d-3p 124739 USP43 cguuuucuuugacacCAAAAAc |||||| aaaaauuguauuaaaGUUUUUc 2 8 574 595 [hg19:17:9632881-9632902:+] 0.6624 120 6 -5.22 -0.2831 MIMAT0003331 hsa-miR-655 124739 USP43 uuUCUCCAAUUGGU-ACAUAAUa | | |||| | ||||||| uaAUAUAUUAAAAAUUGUAUUAa 2 21 565 587 [hg19:17:9632872-9632894:+] 0.6624 151 7 -5.79 -1.3426 MIMAT0003332 hsa-miR-656 124739 USP43 ucUCCAACUGACAUAUUAUAa ||| ||| | | |||||| ucAGG-UGAAUAUUUAAUAUa 2 20 552 571 [hg19:17:9632859-9632878:+] 0.6452 133 6 -8.06 -0.4148 MIMAT0003338 hsa-miR-660 124739 USP43 guUGAG-GCUAUACGUUACCCAu :||| :| |: | ||||||| caGCUCAUGUUGAG-AAUGGGUu 2 21 61 82 [hg19:17:9632368-9632389:+] 0.5320 149 7 -19.57 -0.2345 MIMAT0005795 hsa-miR-1323 124739 USP43 ucuuuuacggggagUCAAAACu ||||||| gauauuuacuaaagAGUUUUGg 2 9 284 305 [hg19:17:9632591-9632612:+] 0.4400 140 7 -9.22 -0.3523 MIMAT0005795 hsa-miR-1323 124739 USP43 ucUUUUACGGGGAGUCAAAAcu ||| ||: :: |||||| aaAAAUUGUAUUAAAGUUUUuc 3 21 574 595 [hg19:17:9632881-9632902:+] 0.6624 136 0 -5.42 -0.2372 MIMAT0004185 hsa-miR-802 124739 USP43 ugUUCCUACUUA-GAAACAAUGAc || || | | :|||| |||| uuAAAAAUAACUAUUUUGAUACUa 2 22 604 627 [hg19:17:9632911-9632934:+] 0.6797 128 0 -5.62 -0.1635 MIMAT0010357 hsa-miR-670 124739 USP43 gugguguauguGAGUCCCug :|||||| guauuaccaguUUCAGGGca 3 10 258 277 [hg19:17:9632565-9632584:+] 0.5625 121 0 -16.82 -0.1030 MIMAT0004917 hsa-miR-888* 124739 USP43 aaguggguuUCUC-CACAGUCAg :||| |||||||| --------uGGAGCGUGUCAGUa 2 14 1 15 [hg19:17:9632308-9632322:+] 0.5957 152 7 -18.10 -0.5062 MIMAT0004921 hsa-miR-889 124739 USP43 uguuaccaacaggcUAUAAUu |||||| ggugaauauuuaauAUAUUAa 2 8 555 575 [hg19:17:9632862-9632882:+] 0.6452 120 6 -3.60 -0.5836 MIMAT0004923 hsa-miR-875-3p 124739 USP43 guguuggaguCACAAAGGUCc | |||||||| uguugagaauGGGUUUCCAGg 2 12 68 88 [hg19:17:9632375-9632395:+] 0.5918 147 7 -17.55 -0.1267 MIMAT0004946 hsa-miR-744* 124739 USP43 ucCAACUCCAAUCACCG-UUGUc ||| || |: ||| |||| gaGUUUUGGAUGUGGGCAAACAa 2 21 297 319 [hg19:17:9632604-9632626:+] 0.3175 120 0 -12.56 -0.2446 MIMAT0004987 hsa-miR-944 124739 USP43 gaGUAGGCUACAU-GUUAUUAAa :||:: || || :|| |||| aaUAUUUAAUAUAUUAAAAAUUg 2 21 559 581 [hg19:17:9632866-9632888:+] 0.6452 127 0 -1.44 -0.1252 MIMAT0005828 hsa-miR-1183 124739 USP43 acgGGUGAGAGUGGUAGUGGAUGUCAc :||:| | |:: ||||||| gcaUCAUUGGGUGCUUUG-CUACAGUu 2 25 205 230 [hg19:17:9632512-9632537:+] 0.5625 142 7 -15.00 -0.2258 MIMAT0005584 hsa-miR-1229 124739 USP43 gacACCCUCCCGUCACC-ACUCUc |||||| | ||| ||||| agaUGGGAGAUAAAUGGCUGAGAg 2 21 527 550 [hg19:17:9632834-9632857:+] 0.6452 132 0 -24.72 -1.0799 MIMAT0005865 hsa-miR-1202 124739 USP43 gagggggugACGUCGACCGUg || ||||||| aguauugugUGACGCUGGCAu 2 13 12 32 [hg19:17:9632319-9632339:+] 0.4940 144 7 -16.36 -0.2431 MIMAT0005874 hsa-miR-548e 124739 USP43 acGUUUUCAUCAGA--GUCAAAAa :|||| | || | |||||| auUAAAAAUUGUAUUAAAGUUUUu 2 21 571 594 [hg19:17:9632878-9632901:+] 0.6624 127 6 -6.54 -0.2212 MIMAT0005880 hsa-miR-1290 124739 USP43 agggacuagguUUUUAGGu ||||||| acaauuuuaauAAAAUCCu 2 9 669 687 [hg19:17:9632976-9632994:+] 0.5781 140 7 -6.11 -1.2259 MIMAT0005880 hsa-miR-1290 124739 USP43 agggacuaggUUUUUAGGu ||||:||| auacuagaaaAAAAGUCCa 2 10 622 640 [hg19:17:9632929-9632947:+] 0.6220 129 0 -12.34 -0.2187 MIMAT0005882 hsa-miR-548k 124739 USP43 ucgUUUUAGGCGUU-CAUGAAAa ||: |:: ||| |||:||| uuaAAGUUUUUCAAGGUAUUUUa 2 20 584 606 [hg19:17:9632891-9632913:+] 0.6624 142 0 -10.30 -0.1651 MIMAT0005891 hsa-miR-1303 124739 USP43 ucucguucuggggcAGAGAUUu ||||||| ccguugucuuguaaUCUCUAAa 2 9 93 114 [hg19:17:9632400-9632421:+] 0.4661 140 7 -14.50 -1.1224 MIMAT0005895 hsa-miR-548f 124739 USP43 uuUUCAU-UAAUGUCAAAAa || |: |||| |||||| aaAAUUGUAUUAAAGUUUUu 2 18 575 594 [hg19:17:9632882-9632901:+] 0.6624 132 6 -6.84 -0.2212 MIMAT0005895 hsa-miR-548f 124739 USP43 uuuucAUUAAUGUCAAAAa || |||| |||| agaucUAUGUACAAUUUUa 2 15 659 677 [hg19:17:9632966-9632984:+] 0.5644 122 0 -2.09 -0.1380 MIMAT0005896 hsa-miR-1244 124739 USP43 uuggUAGAGUAUGUUUGGUUGAUGAa :| |: || ||| :|||||:| caagGUAUUUUA-AAAAUAACUAUUu 2 23 595 619 [hg19:17:9632902-9632926:+] 0.6797 144 0 -13.60 -0.1256 MIMAT0005898 hsa-miR-1246 124739 USP43 ggacgaggUUUUUAGGUAa ||||:||||| acuagaaaAAAAGUCCAUu 2 12 624 642 [hg19:17:9632931-9632949:+] 0.6220 139 0 -13.47 -0.1399 MIMAT0005912 hsa-miR-548g 124739 USP43 cauguuuucauuaAUGUCAAAa |||||||| uugggugcuuugcUACAGUUUg 2 10 211 232 [hg19:17:9632518-9632539:+] 0.5625 145 7 -9.35 -0.2505 MIMAT0005919 hsa-miR-548o 124739 USP43 cgUUUUCAUUGA--CGUCAAAACc :| | | ||| ||||||| cuGAUAUUUACUAAAGAGUUUUGg 2 21 282 305 [hg19:17:9632589-9632612:+] 0.4400 143 7 -12.44 -0.3438 MIMAT0005919 hsa-miR-548o 124739 USP43 cgUUUUCAU-UGACGUCAAAAcc |||| |: |:| |||||| uaAAAAUUGUAUUAAAGUUUUuc 3 21 573 595 [hg19:17:9632880-9632902:+] 0.6624 139 0 -5.17 -0.2329 MIMAT0005923 hsa-miR-1269 124739 USP43 ggucaucgugccgagUCAGGUc |||||| ugauacuagaaaaaaAGUCCAu 2 8 620 641 [hg19:17:9632927-9632948:+] 0.6220 120 6 -12.60 -0.4257 MIMAT0005935 hsa-miR-548i 124739 USP43 ccgUUUUAGG-CGUUAAUGAAAa |||:||| : ||| ||| aaaAAAGUCCAUUUUUUAAUUUa 2 20 630 652 [hg19:17:9632937-9632959:+] 0.6220 122 0 -6.29 -0.1283 MIMAT0005937 hsa-miR-1279 124739 USP43 ucuuucuucgUUAUACu |||||| uuuuaauuuaAAUAUGa 2 8 643 659 [hg19:17:9632950-9632966:+] 0.5644 120 6 -5.58 -0.2745 MIMAT0005953 hsa-miR-1322 124739 USP43 gucguagucGUCGUAGUAg | ||||||| aaaaccuucCUGCAUCAUu 2 11 194 212 [hg19:17:9632501-9632519:+] 0.5082 142 7 -9.69 -0.1933 MIMAT0009979 hsa-miR-2054 124739 USP43 uuAUUUAAUUUAAAUAUA-AUGUc ||||| :| | ||| |||| uuUAAAUAUGAGAUCUAUGUACAa 2 22 649 672 [hg19:17:9632956-9632979:+] 0.5644 125 0 -5.48 -1.2832 MIMAT0011159 hsa-miR-2115* 124739 USP43 gaucggagguacuUAAGACUAc |||:|||| uuuaaaaauaacuAUUUUGAUa 2 10 603 624 [hg19:17:9632910-9632931:+] 0.6797 129 0 -5.02 -0.1370 MIMAT0011161 hsa-miR-2116* 124739 USP43 cccucaagaaccgUACCCUCc ||||||| cuagcaaagagagAUGGGAGa 2 9 516 536 [hg19:17:9632823-9632843:+] 0.5536 140 7 -11.88 -0.8939 MIMAT0014981 hsa-miR-3119 124739 USP43 cgguaguuucaaUUUUCGGu |||||:| ugauacuagaaaAAAAGUCc 2 9 620 639 [hg19:17:9632927-9632946:+] 0.6220 124 0 -6.60 -0.1778 MIMAT0014983 hsa-miR-3121 124739 USP43 acaggaaacggaugaGAUAAAu |||||| guauuuuaaaaauaaCUAUUUu 2 8 599 620 [hg19:17:9632906-9632927:+] 0.6797 120 6 -4.86 -0.3417 MIMAT0014987 hsa-miR-548s 124739 USP43 uuuuAUUGACGUCAAAACCGGUa | :|| ||| |||||||| ugcuUUGCUACAG-UUUGGCCAc 2 20 216 237 [hg19:17:9632523-9632544:+] 0.5625 161 7 -17.65 -0.4379 MIMAT0014998 hsa-miR-3133 124739 USP43 uaACCCAAAAUUCUCAAGAAAu ||| |||| |||||| aaUGGCUUUUCCUUUUUCUUUc 2 21 368 389 [hg19:17:9632675-9632696:+] 0.5176 128 6 -6.91 -0.1781 MIMAT0014999 hsa-miR-378b 124739 USP43 aagacggaggUUCAGGUca ||||||| acuagaaaaaAAGUCCAuu 3 10 624 642 [hg19:17:9632931-9632949:+] 0.6220 125 0 -10.48 -0.4638 MIMAT0015005 hsa-miR-3137 124739 USP43 uggGGUAA-CGAGGGUCCGAUGUCu :|||| | | |: ||||||| gcaUCAUUGGGUGCUUUGCUACAGu 2 22 205 229 [hg19:17:9632512-9632536:+] 0.5625 156 7 -21.18 -0.6030 MIMAT0015008 hsa-miR-3140 124739 USP43 ugauggacuuaaggGUUUUCga |||||| aaagaaaaaaaaaaCAAAAGaa 3 9 470 491 [hg19:17:9632777-9632798:+] 0.4832 120 0 -5.98 -0.1414 MIMAT0015009 hsa-miR-548t 124739 USP43 guUUUUGGUGCUAGUGAAAAc |:| |:|:| || |||| ugAGAUCUAUGUACAAUUUUa 2 20 657 677 [hg19:17:9632964-9632984:+] 0.5644 127 0 -6.70 -0.1380 MIMAT0015015 hsa-miR-3144-3p 124739 USP43 auuucucuggcuugUCCAUAua |||||| auuaaaguuuuucaAGGUAUuu 3 9 583 604 [hg19:17:9632890-9632911:+] 0.6624 120 0 -9.56 -0.3699 MIMAT0015016 hsa-miR-3145 124739 USP43 guuAAGGUUUGUGAG--UUUUAUAGa ||| |:::|:|: |||||| | uuuUUCAAGGUAUUUUAAAAAUAACu 2 22 590 615 [hg19:17:9632897-9632922:+] 0.6797 132 0 -8.65 -0.1394 MIMAT0015016 hsa-miR-3145 124739 USP43 guUAAGGUUUGUGAGUUUUAUAga |||:: | |:|: |||||| ccAUUUUUUA-AUUU-AAAUAUga 3 23 638 659 [hg19:17:9632945-9632966:+] 0.5644 130 0 -3.81 -0.2195 MIMAT0015021 hsa-miR-3148 124739 USP43 uucguguguggUCAAAAAAGgu || |||||| aauuguauuaaAG-UUUUUCaa 3 12 577 597 [hg19:17:9632884-9632904:+] 0.6624 121 0 -7.88 -0.2534 MIMAT0015027 hsa-miR-3074 124739 USP43 gccacggaugaCUCGACUAUAg || ||||||| uuucagggcaaGAACUGAUAUu 2 12 268 289 [hg19:17:9632575-9632596:+] 0.5625 147 7 -13.07 -0.9913 MIMAT0015031 hsa-miR-3157 124739 USP43 ucugacgugaucggACCGACUu ||||||| agaugggagauaaaUGGCUGAg 2 9 527 548 [hg19:17:9632834-9632855:+] 0.6452 140 7 -15.73 -1.0564 MIMAT0015033 hsa-miR-3159 124739 USP43 caccggcugugaacaUUAGGAu |||||| guacaauuuuaauaaAAUCCUg 2 8 667 688 [hg19:17:9632974-9632995:+] 0.5781 120 6 -9.26 -0.1741 MIMAT0015037 hsa-miR-3163 124739 USP43 cagaaugacgggaGUAAAAUAu :||||||| acuuaaagaaaaaUAUUUUAUu 2 10 411 432 [hg19:17:9632718-9632739:+] 0.4437 141 7 -7.79 -1.0225 MIMAT0015037 hsa-miR-3163 124739 USP43 cagaAUGACGGGAGUAAAAUau || ||: | |||||| gaucUA-UGUAC-AAUUUUAau 3 19 660 679 [hg19:17:9632967-9632986:+] 0.5781 122 0 -5.01 -0.1891 MIMAT0015037 hsa-miR-3163 124739 USP43 cagaaugacgggaGUAAAAUau :|||||| aaguuuuucaaggUAUUUUAaa 3 10 587 608 [hg19:17:9632894-9632915:+] 0.6797 121 0 -5.09 -0.4472 MIMAT0015042 hsa-miR-3167 124739 USP43 ugugGUCAUAAAGACUUUAGGa || | || | |||||| uguaCAAUUUUAAUAAAAUCCu 2 19 666 687 [hg19:17:9632973-9632994:+] 0.5781 126 6 -9.33 -0.1334 MIMAT0015071 hsa-miR-3189 124739 USP43 gaugGGGUAGUCUGGGUUCCc :|||| |||||||| aaggUCCAUAUAACCCAAGGu 2 18 171 191 [hg19:17:9632478-9632498:+] 0.4539 157 7 -22.32 -0.6133 MIMAT0015071 hsa-miR-3189 124739 USP43 gauGGGGUAGUCUGGGUUCCc ::||| | |||||||| gacUUCCA--ACACCCAAGGu 2 19 157 175 [hg19:17:9632464-9632482:+] 0.4539 151 7 -18.60 -0.5160 MIMAT0015074 hsa-miR-3190-3p 124739 USP43 gagagaCCGGCAGAUGGAAGGu ||:|| ||||||| acccaaGGUCGAAAACCUUCCu 2 17 183 204 [hg19:17:9632490-9632511:+] 0.5082 152 7 -21.05 -0.4369 MIMAT0015081 hsa-miR-548x 124739 USP43 acUUUCAU-UAACGUCAAAAAu ||| |: ||| ||||||| aaAAAUUGUAUUAAAGUUUUUc 2 20 574 595 [hg19:17:9632881-9632902:+] 0.6624 158 7 -6.31 -1.2220 MIMAT0015085 hsa-miR-3200 124739 USP43 gucuggacucaucgcGUUCCAc |||||| uguauuaaaguuuuuCAAGGUa 2 8 580 601 [hg19:17:9632887-9632908:+] 0.6624 120 6 -9.03 -0.7015 MIMAT0015090 hsa-miR-1273d 124739 USP43 ugaCGUCGGAGUUGGA---GUACCCAAg |||| |||| :| ||||||| uagGCAG-CUCAUGUUGAGAAUGGGUUu 2 23 57 83 [hg19:17:9632364-9632390:+] 0.5320 151 7 -21.92 -0.3714 MIMAT0016847 hsa-miR-378c 124739 USP43 ggUGAGAAGACUGAGG-------UUCAGGUca ||| ||:|||: |: ||||||| uaACUAUUUUGAUACUAGAAAAAAAGUCCAuu 3 24 611 642 [hg19:17:9632918-9632949:+] 0.6220 134 0 -17.57 -0.4605 MIMAT0016860 hsa-miR-4307 124739 USP43 ccUUUGUCCUUUUUUGUaa ||: | |||||||| aaAAGAAAAAAAAAACAaa 3 18 469 487 [hg19:17:9632776-9632794:+] 0.5044 137 0 -6.48 -0.1682 MIMAT0016908 hsa-miR-4277 124739 USP43 cacAUGACACGAGUCUUGACg | | | || ||||||| aguUUCAGGGC-AAGAACUGa 2 19 266 285 [hg19:17:9632573-9632592:+] 0.5625 144 7 -12.17 -0.8276 MIMAT0016908 hsa-miR-4277 124739 USP43 caCAUGACACGAGUC-UUGACg | ||| ||| || ||||| ugGGACUUUGCCAAGCAACUGu 2 20 36 57 [hg19:17:9632343-9632364:+] 0.4640 127 0 -14.94 -0.2230 MIMAT0016912 hsa-miR-4282 124739 USP43 aggaccuacgUUUAAAAu ||||||| cucuaaaaaaAAAUUUUu 2 9 108 125 [hg19:17:9632415-9632432:+] 0.4661 140 7 -3.59 -1.1186 MIMAT0016912 hsa-miR-4282 124739 USP43 aggaccuacguUUAAAAu |||||| gaucuauguacAAUUUUa 2 8 660 677 [hg19:17:9632967-9632984:+] 0.5644 120 6 -7.98 -0.4158 MIMAT0000077 hsa-miR-22 124739 USP43 ugucaagaaGUUGA---CCGUCGAa ||||| ||||||| uuugccaagCAACUGUAGGCAGCUc 2 14 42 66 [hg19:17:9632349-9632373:+] 0.5320 148 7 -17.48 -0.5234 MIMAT0000082 hsa-miR-26a 124739 USP43 ucgGAUAGGACCUAAUGAACUu ||||::| || |||| || uaaCUAUUUU-GA-UACUAGAa 2 20 611 630 [hg19:17:9632918-9632937:+] 0.6797 127 0 -13.13 -0.1302 MIMAT0000083 hsa-miR-26b 124739 USP43 ugGAUAGGACUUAAUGAACUu ||||::||| |||| || aaCUAUUUUGA--UACUAGAa 2 20 612 630 [hg19:17:9632919-9632937:+] 0.6797 132 0 -14.78 -0.1302 MIMAT0000259 hsa-miR-182 124739 USP43 ucacacucAAGAUGGUAACGGUUu || : | ||||||| uggcauucUUGGGACUUUGCCAAg 2 17 27 50 [hg19:17:9632334-9632357:+] 0.4790 144 7 -13.54 -0.1138 MIMAT0000273 hsa-miR-216a 124739 USP43 aguGUCAACGGUCGACUCUAau :| || | |||||| uuuUAAUUUAAAUAUGAGAUcu 3 20 643 664 [hg19:17:9632950-9632971:+] 0.5644 123 0 -6.33 -0.2241 MIMAT0000318 hsa-miR-200b 124739 USP43 aguaguaAUGGUCC-GUCAUAAu ||:::|| ||||||| aggaugcUAUUGGGUCAGUAUUa 2 16 241 263 [hg19:17:9632548-9632570:+] 0.5625 154 7 -15.48 -0.7536 MIMAT0000318 hsa-miR-200b 124739 USP43 aguaguaaugguCCGUCAUAAu | ||||||| ----uggagcguGUCAGUAUUg 2 11 1 18 [hg19:17:9632308-9632325:+] 0.5957 142 7 -10.25 -0.2466 MIMAT0000428 hsa-miR-135a 124739 USP43 agUGU-AUCCUUAUUUUUC-GGUAu |:| || ||| |||||| |||| ugAUACUA-GAA-AAAAAGUCCAUu 2 22 620 642 [hg19:17:9632927-9632949:+] 0.6220 128 0 -12.03 -1.3173 MIMAT0000436 hsa-miR-144 124739 USP43 ucaUGUAGUAGA---UAUGACAu |::|||| | ||||||| ucaAUGUCAUGUCAAAUACUGUc 2 18 345 367 [hg19:17:9632652-9632674:+] 0.5176 152 7 -10.81 -0.8137 MIMAT0000456 hsa-miR-186 124739 USP43 ucggguuuuccucuuAAGAAAc |||||| aauggcuuuuccuuuUUCUUUc 2 8 368 389 [hg19:17:9632675-9632696:+] 0.5176 120 6 -4.44 -0.1921 MIMAT0000617 hsa-miR-200c 124739 USP43 agguaguaAUGGGCC-GUCAUAAu ||:: || ||||||| gaggaugcUAUUGGGUCAGUAUUa 2 16 240 263 [hg19:17:9632547-9632570:+] 0.5625 150 7 -14.87 -0.7536 MIMAT0000617 hsa-miR-200c 124739 USP43 agguaguaaUGGGCCGUCAUAAu :| :| ||||||| -----uggaGCGUGUCAGUAUUg 2 15 1 18 [hg19:17:9632308-9632325:+] 0.5957 146 7 -12.85 -0.2466 MIMAT0000646 hsa-miR-155 124739 USP43 uggGGAUAG-UGCUAAUCGUAAUu |:| || : ||| ||||||| augCUUUUCUGGGAUAAGCAUUAa 2 21 437 460 [hg19:17:9632744-9632767:+] 0.5044 159 7 -15.51 -1.0829 MIMAT0000720 hsa-miR-376c 124739 USP43 ugcaccuuaaaggAGAUACAa ||||||| uuuaaauaugagaUCUAUGUa 2 9 649 669 [hg19:17:9632956-9632976:+] 0.5644 140 7 -8.22 -1.2538 MIMAT0000729 hsa-miR-376a 124739 USP43 ugcaccuaaaaggAGAUACua |||||| uuuaaauaugagaUCUAUGua 3 9 649 669 [hg19:17:9632956-9632976:+] 0.5644 120 0 -7.49 -0.2146 MIMAT0000730 hsa-miR-377 124739 USP43 ugUUUUCAACGG--A-AACACACUa ::|: ||:| | |||||||| -uGGAGCGUGUCAGUAUUGUGUGAc 2 21 1 24 [hg19:17:9632308-9632331:+] 0.5957 146 7 -15.09 -0.1304 MIMAT0000732 hsa-miR-378 124739 USP43 ggAAGA-CUGAGGUUCAGGUca | || || ||||||| gaUACUAGAAAAAAAGUCCAuu 3 20 621 642 [hg19:17:9632928-9632949:+] 0.6220 126 0 -12.15 -0.4605 MIMAT0000736 hsa-miR-381 124739 USP43 ugucucucgaacgggAACAUAu |||||| uuaauauauuaaaaaUUGUAUu 2 8 564 585 [hg19:17:9632871-9632892:+] 0.6452 120 6 -7.52 -0.3436 MIMAT0000758 hsa-miR-135b 124739 USP43 agUGU-AUCCUUACUUUUC-GGUAu |:| ||| || ||||| |||| ugAUACUAGAAA--AAAAGUCCAUu 2 22 620 642 [hg19:17:9632927-9632949:+] 0.6220 125 0 -10.45 -1.3173 MIMAT0001339 hsa-miR-422a 124739 USP43 cggAAGA-CUGGGAUUCAGGUca | || || ||||||| ugaUACUAGAAAAAAAGUCCAuu 3 20 620 642 [hg19:17:9632927-9632949:+] 0.6220 126 0 -11.05 -0.4605 MIMAT0001536 hsa-miR-429 124739 USP43 ugCCAAAAUGGUCU-GUCAUAAu | | ||:::|: ||||||| agGAUGCUAUUGGGUCAGUAUUa 2 21 241 263 [hg19:17:9632548-9632570:+] 0.5625 151 7 -14.99 -0.7573 MIMAT0001536 hsa-miR-429 124739 USP43 ugccaaaaugguCUGUCAUAAu | ||||||| ----uggagcguGUCAGUAUUg 2 11 1 18 [hg19:17:9632308-9632325:+] 0.5957 142 7 -11.22 -0.2444 MIMAT0002172 hsa-miR-376b 124739 USP43 uuguaccuaaaaggAGAUACua |||||| auuuaaauaugagaUCUAUGua 3 9 648 669 [hg19:17:9632955-9632976:+] 0.5644 120 0 -10.45 -0.2146 MIMAT0004903 hsa-miR-300 124739 USP43 ucucucucagacgggAACAUAu |||||| uuaauauauuaaaaaUUGUAUu 2 8 564 585 [hg19:17:9632871-9632892:+] 0.6452 120 6 -5.35 -0.3464 MIMAT0004911 hsa-miR-874 124739 USP43 agccAGGGAGCCCGGUCCCGUc |: | | :||||||| aguaUUACCAGUUUCAGGGCAa 2 19 257 278 [hg19:17:9632564-9632585:+] 0.5625 142 7 -17.02 -1.1891 MIMAT0004922 hsa-miR-875-5p 124739 USP43 guggacuauuuugacUCCAUAu |||||| uauuaaaguuuuucaAGGUAUu 2 8 582 603 [hg19:17:9632889-9632910:+] 0.6624 120 6 -7.11 -0.3403 MIMAT0004924 hsa-miR-876-5p 124739 USP43 accacUAAGUGUUUCUUUAGGu |||: :|| |||||| guacaAUUU-UAAUAAAAUCCu 2 18 667 687 [hg19:17:9632974-9632994:+] 0.5781 123 6 -6.67 -0.1334

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G056491 USP43 Homo sapiens 124739

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End USP43 1 693 100 54.775 + chr17 9632307 9633000 USP43 694 701 14.594 54.775 + chr17 9633000 9633008 USP43 702 757 5.466 54.775 + chr17 9633008 9633064 USP43 758 783 2.742 54.775 + chr17 9633064 9633090

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile USP43 hsa-miR-609 beg:154 end:171 pic:3' TCTCTACTCTCT-TTGTGGGA 5'& || ||||||| &5' ------GACTTCCAACACCC- 3' USP43 hsa-miR-582-5p beg:46 end:60 pic:3' TCATTGACCAACTTGTTGACATT 5'& |.||||||||. &5' ------------AGCAACTGTAG 3' USP43 hsa-miR-3190-3p beg:186 end:204 pic:3' GAGAGACCGGCAGATGGAAGGT 5'& ||.|| ||||||| &5' ------GGTCGAAAACCTTCC- 3' USP43 hsa-miR-139-5p beg:47 end:61 pic:3' GACCTCTGTGCACG-TGACATCT 5'& || |||||||. &5' ------------GCAACTGTAGG 3' USP43 kshv-miR-K12-11 beg:444 end:461 pic:3' AGCCTGTGTCCGATTCGTAATT 5'& .|| |||||||||| &5' --------GGGATAAGCATTAA 3' USP43 hsa-miR-493star beg:653 end:673 pic:3' TTACTTTCGGATGGTACATGTT 5'& ||||.| |.|||||||| &5' -ATGAGAT----CTATGTACAA 3' USP43 hsa-miR-874 beg:261 end:278 pic:3' AGCCAGGGAGCCCGGTCCCGTC 5'& || | .||||||| &5' -----CCA--GTTTCAGGGCA- 3' USP43 hsa-miR-200b beg:245 end:264 pic:3' AGTAGTAATGGTCC-GTCATAAT 5'& ||. || |||||||| &5' -------TATTGGGTCAGTATTA 3' USP43 hsa-miR-200c beg:245 end:264 pic:3' AGGTAGTAATGGGCC-GTCATAAT 5'& ||.. || |||||||| &5' --------TATTGGGTCAGTATTA 3' USP43 hsa-miR-429 beg:245 end:264 pic:3' TGCCAAAATGGTCT-GTCATAAT 5'& ||. |. |||||||| &5' -------TATTGGGTCAGTATTA 3' USP43 hsa-miR-3074 beg:270 end:290 pic:3' GCCACGGATGACTCGACTATAG 5'& || || || |||||||. &5' -GG-GCAA---GAACTGATATT 3' USP43 ebv-miR-BART3star beg:202 end:217 pic:3' TCGTGTTGTGATTGTGATCCA 5'& |||. ||.|.||| &5' -GCAT--------CATTGGGT 3' USP43 hsa-miR-558 beg:53 end:68 pic:3' TAAAACCATGTCGTCGAGT 5'& ||| .|||||||| &5' ------GTA-GGCAGCTCA 3' USP43 hsa-miR-1202 beg:18 end:33 pic:3' GAGGGGGTGACGTCGACCGTG 5'& || |||||||. &5' ---------TGACGCTGGCAT 3' USP43 hsa-miR-22 beg:48 end:66 pic:3' TGTCAAGAAGTTGA---CCGTCGAA 5'& ||||| ||||||| &5' ---------CAACTGTAGGCAGCT- 3' USP43 hiv1-miR-TAR-5p beg:508 end:530 pic:3' AGTCTAGACCAGATTGG-TCTCTCT 5'& |||| ||||.| ||||||| &5' --AGAT----TCTAGCAAAGAGAGA 3' USP43 hsa-let-7astar beg:521 end:544 pic:3' CTTTCTGTCATCTAACATATC 5'& ||.|||..| |||| ||.| &5' GAGAGATGGGAGATAA-ATGG 3' USP43 hsa-miR-107 beg:211 end:235 pic:3' ACTATCGGGAC-ATGTTACGACGA 5'& |.| ||..|| ||||.| || &5' -GGT-GCTTTGCTACAGTTTGGC- 3' USP43 hsa-miR-1178 beg:301 end:316 pic:3' GATCCCTTCTTGTCACTCGTT 5'& |.|. |||.|||| &5' --------GGAT-GTGGGCAA 3' USP43 hsa-miR-1182 beg:506 end:518 pic:3' CAGTGTAGGGAGGGTTCTGGGAG 5'& |||||..|| &5' -------------CAAGATTCT- 3' USP43 hsa-miR-1207-3p beg:523 end:548 pic:3' CTTTACTCCCG----GTCGACT 5'& ||.|||.| | ..||||| &5' GAGATGGGAGATAAATGGCTGA 3' USP43 hsa-miR-1229 beg:131 end:144 pic:3' GACACCCTCCCGTCACCACTCTC 5'& ||||||.|.| &5' -------------GTGGTGGGGG 3' USP43 hsa-miR-1246 beg:622 end:643 pic:3' GGACGAGGTTTTTAGGTAA 5'& || ||||.|||||| &5' -CTAGAAAAAAAGTCCATT 3' USP43 hsa-miR-1252 beg:365 end:391 pic:3' ATTTACTT--AAGTT-AAAGGAAGA 5'& ||||. ||| ||||.|||| &5' --AATGGCTTTTCCTTTTTCTTTCT 3' USP43 hsa-miR-1256 beg:323 end:353 pic:3' TCGATCAC-----TCTTC--AGTTACGGA 5'& .|||.|| |||| ||||||.| &5' GGCTGGTTTAATAAGAATCTTCAATGTC- 3' USP43 hsa-miR-1257 beg:270 end:294 pic:3' CCAG-TCTTGGGTAGTAAGTGA 5'& || |||||. | .|||.||| &5' GGGCAAGAACTGA-TATTTACT 3' USP43 hsa-miR-125a-5p beg:264 end:276 pic:3' AGTGTCCAATTTCCCAGAGTCCCT 5'& ||.|||||| &5' --------------GTTTCAGGG- 3' USP43 hsa-miR-125b beg:264 end:276 pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& ||.|||||| &5' ------------GTTTCAGGG- 3' USP43 hsa-miR-1260b beg:131 end:143 pic:3' TACCACCGTCACCACCCTA 5'& ||||||||. &5' ---------GTGGTGGGG- 3' USP43 hsa-miR-1271 beg:451 end:470 pic:3' ACTCACGAACGATCCACGGTTC 5'& || || |||||| &5' -----GCATTAAAGATGCCAA- 3' USP43 hsa-miR-1280 beg:131 end:142 pic:3' CCCACCGTCGCCACCCT 5'& |.||||||. &5' --------GTGGTGGGG 3' USP43 hsa-miR-1282 beg:515 end:538 pic:3' TTCG--TCTTTTT-CCGTTTGCT 5'& ||| |||.|.| || |.|. &5' -AGCAAAGAGAGATGGGAGAT-- 3' USP43 hsa-miR-1290 beg:622 end:641 pic:3' AGGGACTAGGTTTTTAGGT 5'& |. || ||||.|||| &5' --CTAGAAA-AAAAGTCCA 3' USP43 hsa-miR-144 beg:347 end:367 pic:3' TCATGTAGTAGA---TATGACAT 5'& |..|||| | ||||||| &5' ---ATGTCATGTCAAATACTGT- 3' USP43 hsa-miR-145star beg:70 end:94 pic:3' TCTTGTCATAAAGGTCCTTAGG 5'& ||||..| .|||||||||| || &5' AGAATGG-GTTTCCAGGAAACC 3' USP43 hsa-miR-146b-3p beg:263 end:278 pic:3' GGTCTTGACTCAGGTGTCCCGT 5'& |||.. ||||||| &5' ---------AGTTT-CAGGGCA 3' USP43 hsa-miR-150 beg:521 end:537 pic:3' GTGACCATGTTCCCAACCCTCT 5'& .|| | ||||||| &5' ---------GAGAGATGGGAGA 3' USP43 hsa-miR-155 beg:439 end:461 pic:3' TGGGGATAGTGCTAATCGTAATT 5'& . ||. ||| |||||||| &5' -TTTCTGG---GATAAGCATTAA 3' USP43 hsa-miR-181cstar beg:487 end:505 pic:3' CAGGTGAGTTGCCA--GCTACCAA 5'& ||.| .|||||| &5' --------AATGATAGTGATGGT- 3' USP43 hsa-miR-182 beg:33 end:51 pic:3' TCACACTCAAGATGGTAACGGTTT 5'& ||.| ||. |||||||. &5' ----TGGG----ACT-TTGCCAAG 3' USP43 hsa-miR-190b beg:554 end:575 pic:3' TTGGGTTATAGTTTGTATAGT 5'& . |||||. ||.||||.| &5' ---TGAATATTTAATATATTA 3' USP43 hsa-miR-192 beg:239 end:259 pic:3' CCGACAGTTAAGTATCCAGTC 5'& || || | |.|||||| &5' GGATG-CTAT---TGGGTCAG 3' USP43 hsa-miR-193a-3p beg:240 end:260 pic:3' TGACCCTGAAAC-ATCCGGTCAA 5'& |||. |.||.|||| &5' ----GGATGCTATTGGGTCAGT- 3' USP43 hsa-miR-197 beg:131 end:140 pic:3' CGACCCACCTCTTCCACCACTT 5'& ||||||. &5' --------------GTGGTGG- 3' USP43 hsa-miR-200cstar beg:490 end:510 pic:3' GGTTTGTGACGACCCATTCTGC 5'& .|.| || ||||||.| &5' ---GATAGTGAT-GGTAAGGC- 3' USP43 hsa-miR-208b beg:86 end:105 pic:3' TGTTTGGAAAACAAGCAGAATA 5'& ||||| |.|||||.| &5' --AAACCCG----TTGTCTTGT 3' USP43 hsa-miR-2116 beg:55 end:78 pic:3' TCTGGAGGATACGATTCTTGG 5'& ||.| | |||.|.||||. &5' AGGCAGCTCATGTTGAGAAT- 3' USP43 hsa-miR-223 beg:270 end:288 pic:3' ACCCCATAAACTGTTTGACTGT 5'& ||| .||||||.| &5' -GGGCAA------GAACTGATA 3' USP43 hsa-miR-26a-2star beg:60 end:78 pic:3' CTTTGTTCATTAGTTCTTATCC 5'& |.| .| |||||.| &5' --AGCTCAT-GTTGAGAATGG- 3' USP43 hsa-miR-301a beg:214 end:239 pic:3' CGAAAC--TGTTATGATAACGTGAC 5'& |||||| |||.| .|. |||| &5' GCTTTGCTACAGT-TTGGC-CACT- 3' USP43 hsa-miR-302cstar beg:53 end:75 pic:3' GTCGTCCATGGGGGTACAATTT 5'& |.||| |.||||||.|. &5' --GTAGGCAG-CTCATGTTGAG 3' USP43 hsa-miR-3138 beg:670 end:694 pic:3' TGAGGGAGATGG-AGTGACAGGTGT 5'& |.|.. || || |||||||. &5' ATTTTAA-TAAAATC-CTGTCCAT- 3' USP43 hsa-miR-3173 beg:367 end:393 pic:3' ACCGGAC-GGATAAAGGAGGAAA 5'& ||||.| ||| ||||.|.|||| &5' TGGCTTTTCCTTTTTCTTTCTTT 3' USP43 hsa-miR-3180-5p beg:436 end:451 pic:3' GCTGCACCCCGCCTCGC--AGACCTTC 5'& || |||||.| &5' --------------GCTTTTCTGGGA- 3' USP43 hsa-miR-3187 beg:218 end:237 pic:3' GGCGC-GTCGGGGTACCGGTT 5'& .|| |||.. |||||| &5' -TGCTACAGTT---TGGCCA- 3' USP43 hsa-miR-3189 beg:170 end:191 pic:3' GATGGGGTAGTCTGGGTTCCC 5'& . .|||| |||||||| &5' --GGTCCATATAACCCAAGG- 3' USP43 hsa-miR-330-3p beg:200 end:224 pic:3' AGAGACGTCC-GGCACACGAAACG 5'& ||||| ..| ||||||||| &5' ---CTGCATCATTGGGTGCTTTGC 3' USP43 hsa-miR-331-5p beg:139 end:158 pic:3' CCTAGGGACCCT--GGTATGGATC 5'& ||| |||||.|||| &5' --------GGGTCTCCATATCTAG 3' USP43 hsa-miR-335star beg:54 end:77 pic:3' CCAGTCC-TCGT-TATTACTTTTT 5'& .||| ||| ||. |||.|| &5' ---TAGGCAGCTCATGTTGAGAA- 3' USP43 hsa-miR-4256 beg:338 end:359 pic:3' TGGAAGT---AGTCCAGTCTA 5'& |.||||| ||| |||| &5' ATCTTCAATGTCATGTCA--- 3' USP43 hsa-miR-4263 beg:267 end:282 pic:3' CCGGTTCCGTGAATCTTA 5'& .||.|||| |||| &5' --TCAGGGCA---AGAA- 3' USP43 hsa-miR-4264 beg:532 end:549 pic:3' TTACTGG-TACTGACTCA 5'& ||. |||.||||| &5' ---GATAAATGGCTGAG- 3' USP43 hsa-miR-4277 beg:264 end:285 pic:3' CACATGACA-CGAGTCTTGACG 5'& || || ||||||| &5' --GTTTCAGGGCA-AGAACTG- 3' USP43 hsa-miR-4294 beg:145 end:164 pic:3' GGGACGACATCTGAGGG 5'& || ||||||.|| &5' -CCATATCTAGACTTCC 3' USP43 hsa-miR-4309 beg:498 end:520 pic:3' ACC-TTAGGATCTGAGGTC 5'& ||| || | |||.||.|| &5' TGGTAAGGCAAGATTCTAG 3' USP43 hsa-miR-4319 beg:264 end:276 pic:3' CACCGAAAC-GAGTCCCT 5'& | .|||||| &5' --------GTTTCAGGG- 3' USP43 hsa-miR-4329 beg:264 end:275 pic:3' CACCTTGATCCCAGAGTCC 5'& ||.||||| &5' -----------GTTTCAGG 3' USP43 hsa-miR-449a beg:348 end:369 pic:3' TGGT-CGATTGTTATGTGACGGT 5'& .|| |. ||| |.||||.|| &5' -TCATGT---CAA-ATACTGTCA 3' USP43 hsa-miR-452star beg:540 end:560 pic:3' GTGAATGAAGAAAC-GTCTACTC 5'& .|| |||.||| &5' -----GCTGAGAGTTCAGGTGA- 3' USP43 hsa-miR-489 beg:345 end:359 pic:3' CGACGGCATATACACTACAGTG 5'& |||| |||||| &5' ----------ATGTCATGTCA- 3' USP43 hsa-miR-493 beg:326 end:348 pic:3' GGACCGTG-TGTCATC-TGGAAGT 5'& ||||. |.| || |.||||| &5' -CTGGTTTAATA--AGAATCTTCA 3' USP43 hsa-miR-511 beg:509 end:539 pic:3' ACTGA---CG----TCTC-GTTTTCTGTG 5'& ||.| || |||| . .|||.| &5' -GATTCTAGCAAAGAGAGATGGGAGATA- 3' USP43 hsa-miR-513c beg:56 end:76 pic:3' TATTTGCTGTGGAGG--AACTCTT 5'& |.|| ||| ||||||| &5' ------GGCAGCTCATGTTGAGAA 3' USP43 hsa-miR-514 beg:0 end:15 pic:3' AGATGAGTGTCTT-CACAGTTA 5'& .||. ||||||.| &5' ---------GGAGCGTGTCAGT 3' USP43 hsa-miR-514b-3p beg:0 end:15 pic:3' AGGTGAGTGTCTC-CACAGTTA 5'& .||| ||||||.| &5' ---------GGAGCGTGTCAGT 3' USP43 hsa-miR-514b-5p beg:57 end:76 pic:3' TACTAACGGAGGG-AGAACTCTT 5'& || |.| | ||||||| &5' ------GCAGCTCATGTTGAGAA 3' USP43 hsa-miR-548s beg:219 end:237 pic:3' TTTTATTGACGTCAAAACCGGTA 5'& .|| ||| |||||||| &5' ------GCTACAG-TTTGGCCA- 3' USP43 hsa-miR-561 beg:25 end:45 pic:3' TGAAGTTCCT--AGAA-TTTGAAAC 5'& || |||| ..|||||| &5' -------GGCATTCTTGGGACTTTG 3' USP43 hsa-miR-582-3p beg:249 end:270 pic:3' CCAAGTCAACAAGTTGGTCAAT 5'& || ||||| ||||||| &5' GGGTCAGTATT---ACCAGTT- 3' USP43 hsa-miR-583 beg:365 end:389 pic:3' CATTACCCT---GGAAGGAGAAAC 5'& ||||| ||||..||||| &5' --AATGGCTTTTCCTTTTTCTTT- 3' USP43 hsa-miR-588 beg:215 end:237 pic:3' CAAGAT-TGGG--TAACACCGGTT 5'& || .|. .|| |||||| &5' ---CTTTGCTACAGTT-TGGCCA- 3' USP43 hsa-miR-609 beg:522 end:546 pic:3' TCTCTACTCTCT--TTGTGGGA 5'& |||||||.|||| ||.. |. &5' AGAGATGGGAGATAAATGGCT- 3' USP43 hsa-miR-626 beg:47 end:65 pic:3' TTCTGTAAAAGTCTGTCGA 5'& .|| .||.||||| &5' ---GCAACTGTAGGCAGCT 3' USP43 hsa-miR-628-3p beg:611 end:630 pic:3' AGCTGACGGTGAGA--ATGATCT 5'& |.|.|.| ||||||| &5' -------CTATTTTGATACTAGA 3' USP43 hsa-miR-628-5p beg:251 end:262 pic:3' GGAGATCATTTATACAGTCGTA 5'& |||||.|| &5' --------------GTCAGTAT 3' USP43 hsa-miR-628-5p beg:0 end:17 pic:3' GGAGATCATTTATACAGTCGTA 5'& .|. ||||||.|| &5' --------GAGCGTGTCAGTAT 3' USP43 hsa-miR-664 beg:539 end:563 pic:3' ACATCCGACCCCTA---TTTACTTAT 5'& ||||| || |..|||||| &5' ----GGCTGA-GAGTTCAGGTGAATA 3' USP43 hsa-miR-888star beg:0 end:15 pic:3' AAGTGGGTTTCTC-CACAGTCAG 5'& .||| |||||||| &5' ---------GGAGCGTGTCAGT- 3' USP43 hsa-miR-924 beg:494 end:518 pic:3' CGTT-CTGTAGTGTTCTGAGA 5'& | | | | .|||||.||| &5' GTGATGGTAAGGCAAGATTCT 3' USP43 hsv1-miR-H7star beg:136 end:159 pic:3' CTTCTCCCCAGCCC--TAGGTTT 5'& |.|||||| |||.|.| &5' ---GGGGGGTCTCCATATCTAGA 3' USP43 kshv-miR-K12-1 beg:88 end:108 pic:3' CGAATGTGGGTCAAAGGACATTA 5'& ||||. ||.|||||| &5' ------ACCCGTTGTCTTGTAAT 3' USP43 kshv-miR-K12-2star beg:508 end:538 pic:3' GTC-GAGATCGGG-------ACCTTCTAG 5'& || .|||||| |||.|||| &5' -AGATTCTAGCAAAGAGAGATGGGAGAT- 3' USP43 kshv-miR-K12-3star beg:351 end:374 pic:3' ACAGTGTAAGACAC-TGGCGCT 5'& ||||| || |||| |. || &5' TGTCAAATACTGTCAATGGC-- 3'

DNA & RNA Element - SomamiR Gene Name Mutation Mutation ID miR ID Chromosome Location Ref Alt mirsite mirseed Seed Class Sample Name Cancer Type USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-1178-5p chr17 9681855 G A ttcctacACCCTGgc CAGGGUCA m6a 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-1268a chr17 9681855 G A ttcctACGCCCtggc CGGGCGUG m6b 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-1268b chr17 9681855 G A ttcctACGCCCtggc CGGGCGUG m6b 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-135b-3p chr17 9681855 G A ttCCTACAccctggc AUGUAGGG m6b 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-3127-5p chr17 9681855 G A ttcctacGCCCTGgc AUCAGGGC m6c 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-3141 chr17 9681855 G A ttcctaCGCCCTggc GAGGGCGG m6b 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-3918 chr17 9681855 G A ttcctacGCCCTGgc ACAGGGCC m6b 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-4280 chr17 9681855 G A ttcCTACACcctggc GAGUGUAG m6c 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-4436b-3p chr17 9681855 G A ttcctacGCCCTGgc CAGGGCAG m6a 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-4446-3p chr17 9681855 G A ttcctacGCCCTGgc CAGGGCUG m6a 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-4455 chr17 9681855 G A ttcctACACCCTggc AGGGUGUG m7a 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-4512 chr17 9681855 G A ttcctacGCCCTGgc CAGGGCCU m6a 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-4685-5p chr17 9681855 G A ttcctacGCCCTGGc CCCAGGGC m7b 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-5088-5p chr17 9681855 G A ttcctacGCCCTGgc CAGGGCUC m6a 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-585-3p chr17 9681855 G A ttccTACGCCCtggc UGGGCGUA m7b 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-609 chr17 9681855 G A ttcctACACCCTggc AGGGUGUU m7a 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-6132 chr17 9681855 G A ttcctacGCCCTGgc AGCAGGGC m6c 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-6735-5p chr17 9681855 G A ttcctacGCCCTGgc CAGGGCAG m6a 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-6747-5p chr17 9681855 G A ttcctACACCCtggc AGGGGUGU m6c 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-6756-5p chr17 9681855 G A ttcctaCACCCTggc AGGGUGGG m6a 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-6772-5p chr17 9681855 G A ttccTACACCCtggc UGGGUGUA m7b 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-6804-5p chr17 9681855 G A ttcctaCACCCTggc UGAGGGUG m6c 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-6806-5p chr17 9681855 G A ttCCTACAccctggc UGUAGGCA m6a 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-6823-5p chr17 9681855 G A ttcctacACCCTGgc UCAGGGUU m6b 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-6836-5p chr17 9681855 G A ttcctacGCCCTGgc CGCAGGGC m6c 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-6837-5p chr17 9681855 G A ttcctacGCCCTGGc ACCAGGGC m7b 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-6879-5p chr17 9681855 G A ttcctacGCCCTGgc CAGGGCAG m6a 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-6895-5p chr17 9681855 G A ttcctacGCCCTGgc CAGGGCCA m6a 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-7160-3p chr17 9681855 G A ttcctacGCCCTGgc CAGGGCCC m6a 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9681855G>A COSN7457788 hsa-miR-8065 chr17 9681855 G A TTCCTACAccctggc UGUAGGAA m8a 8052570 [pancreas][NS][carcinoma][NS] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-24-1-5p chr17 9719632 A G tctGTAGGCAtacat UGCCUACU m7a AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-24-2-5p chr17 9719632 A G tctGTAGGCAtacat UGCCUACU m7a AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-297 chr17 9719632 A G tctgtagACATACAt AUGUAUGU m7b AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-3135a chr17 9719632 A G tctgTAGGCAtacat UGCCUAGG m6a AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-3618 chr17 9719632 A G tcTGTAGACAtacat UGUCUACA m8a AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-4633-5p chr17 9719632 A G tctgtAGGCATAcat AUAUGCCU m7b AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-4774-3p chr17 9719632 A G tctgTAGGCAtacat AUUGCCUA m6c AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-4796-5p chr17 9719632 A G tctgTAGACAtacat UGUCUAUA m6a AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-532-5p chr17 9719632 A G tctgtAGGCATacat CAUGCCUU m6b AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-567 chr17 9719632 A G tctgtagACATACat AGUAUGUU m6b AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-654-3p chr17 9719632 A G tctgtAGACATAcat UAUGUCUG m7a AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-675-3p chr17 9719632 A G tctgtagGCATACAt CUGUAUGC m7b AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-6834-3p chr17 9719632 A G tctgtaGACATAcat UAUGUCCC m6a AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-6836-3p chr17 9719632 A G tctgtAGGCATacat AUGCCUCC m6a AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9719632A>G COSN9324873 hsa-miR-934 chr17 9719632 A G tctGTAGACAtacat UGUCUACU m7a AOCS-139-1-5 [ovary][NS][other][neoplasm] USP43 chr17:g.9724792C>T COSN14901053 hsa-miR-141-3p chr17 9724792 C T tcccaAGTGTTgaag UAACACUG m6b LP6007504-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma] USP43 chr17:g.9724792C>T COSN14901053 hsa-miR-200a-3p chr17 9724792 C T tcccaAGTGTTgaag UAACACUG m6b LP6007504-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma] USP43 chr17:g.9724792C>T COSN14901053 hsa-miR-21-3p chr17 9724792 C T tcccaaGTGTTGaag CAACACCA m6a LP6007504-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma] USP43 chr17:g.9724792C>T COSN14901053 hsa-miR-216b-3p chr17 9724792 C T tcccAAGTGTtgaag ACACACUU m6c LP6007504-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma] USP43 chr17:g.9724792C>T COSN14901053 hsa-miR-3065-5p chr17 9724792 C T tcccaagTGTTGAag UCAACAAA m6a LP6007504-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma] USP43 chr17:g.9724792C>T COSN14901053 hsa-miR-3614-5p chr17 9724792 C T tcCCAAGTGttgaag CCACUUGG m7b LP6007504-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma] USP43 chr17:g.9724792C>T COSN14901053 hsa-miR-421 chr17 9724792 C T tcccaagTGTTGAag AUCAACAG m6b LP6007504-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma] USP43 chr17:g.9724792C>T COSN14901053 hsa-miR-4453 chr17 9724792 C T tcCCAAGCgttgaag GAGCUUGG m6c LP6007504-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma] USP43 chr17:g.9724792C>T COSN14901053 hsa-miR-4538 chr17 9724792 C T tcCCAAGCgttgaag GAGCUUGG m6c LP6007504-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma] USP43 chr17:g.9724792C>T COSN14901053 hsa-miR-505-3p chr17 9724792 C T tcccaagTGTTGAag CGUCAACA m6c LP6007504-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma] USP43 chr17:g.9724792C>T COSN14901053 hsa-miR-6500-3p chr17 9724792 C T tccCAAGTGTtgaag ACACUUGU m7a LP6007504-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma] USP43 chr17:g.9724792C>T COSN14901053 hsa-miR-6757-3p chr17 9724792 C T tcccaAGTGTTgaag AACACUGG m6a LP6007504-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma] USP43 chr17:g.9724792C>T COSN14901053 hsa-miR-7159-5p chr17 9724792 C T tcccaagTGTTGAAg UUCAACAA m7a LP6007504-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma] USP43 chr17:g.9724792C>T COSN14901053 hsa-miR-95-3p chr17 9724792 C T tcccaagCGTTGAAg UUCAACGG m7a LP6007504-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma] USP43 chr17:g.9724793G>A COSN6663070 hsa-miR-1273e chr17 9724793 G A ccCAAGCAttgaaga UUGCUUGA m6b CHC433T [liver][NS][carcinoma][hepatocellular_carcinoma] USP43 chr17:g.9724793G>A COSN6663070 hsa-miR-1305 chr17 9724793 G A cccaagcGTTGAAga UUUUCAAC m6c CHC433T [liver][NS][carcinoma][hepatocellular_carcinoma] USP43 chr17:g.9724793G>A COSN6663070 hsa-miR-155-5p chr17 9724793 G A cccaAGCATTgaaga UUAAUGCU m6c CHC433T [liver][NS][carcinoma][hepatocellular_carcinoma] USP43 chr17:g.9724793G>A COSN6663070 hsa-miR-4272 chr17 9724793 G A cccaagcGTTGAAga CAUUCAAC m6c CHC433T [liver][NS][carcinoma][hepatocellular_carcinoma] USP43 chr17:g.9724793G>A COSN6663070 hsa-miR-636 chr17 9724793 G A ccCAAGCAttgaaga UGUGCUUG m6c CHC433T [liver][NS][carcinoma][hepatocellular_carcinoma] USP43 chr17:g.9724793G>A COSN6663070 hsa-miR-676-5p chr17 9724793 G A cccaagcGTTGAAGa UCUUCAAC m7b CHC433T [liver][NS][carcinoma][hepatocellular_carcinoma] USP43 chr17:g.9724793G>A COSN6663070 hsa-miR-7159-5p chr17 9724793 G A cccaagcGTTGAAga UUCAACAA m6a CHC433T [liver][NS][carcinoma][hepatocellular_carcinoma] USP43 chr17:g.9724793G>A COSN6663070 hsa-miR-95-3p chr17 9724793 G A cccaagCGTTGAAga UUCAACGG m7a CHC433T [liver][NS][carcinoma][hepatocellular_carcinoma]

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region USP43 High_conserved miR-132/212/212-3p chr17:9632212 7-mer-m8 13 CDS USP43 High_conserved miR-7/7ab chr17:9580089 7-mer-m8 42 CDS USP43 High_conserved miR-96/507/1271 chr17:9632777 7-mer-A1 16 3pUTR USP43 High_conserved miR-138/138ab chr17:9604882 7-mer-m8 22 CDS USP43 High_conserved miR-139-5p chr17:9632367 7-mer-m8 13 3pUTR USP43 High_conserved miR-140/140-5p/876-3p/1244 chr17:9631634 7-mer-m8 22 CDS USP43 High_conserved miR-143/1721/4770 chr17:9603502 7-mer-A1 18 CDS USP43 High_conserved miR-144 chr17:9632674 7-mer-m8 9 3pUTR USP43 High_conserved miR-145 chr17:9631802 8-mer 29 CDS USP43 High_conserved miR-148ab-3p/152 chr17:9632191 7-mer-m8 11 CDS USP43 High_conserved miR-150/5127 chr17:9632843 7-mer-A1 20 3pUTR USP43 High_conserved miR-155 chr17:9631322 7-mer-m8 18 CDS USP43 High_conserved miR-155 chr17:9632767 8-mer 31 3pUTR USP43 High_conserved miR-181abcd/4262 chr17:9604536 7-mer-m8 16 CDS USP43 High_conserved miR-182 chr17:9632357 7-mer-m8 11 3pUTR USP43 High_conserved miR-182 chr17:9632777 7-mer-A1 16 3pUTR USP43 High_conserved miR-18ab/4735-3p chr17:9632241 7-mer-m8 42 CDS USP43 High_conserved miR-192/215 chr17:9570033 8-mer 18 CDS USP43 High_conserved miR-192/215 chr17:9613354 7-mer-A1 36 CDS USP43 High_conserved miR-193/193b/193a-3p chr17:9613303 7-mer-m8 44 CDS USP43 High_conserved miR-196abc chr17:9578281 7-mer-A1 16 CDS USP43 High_conserved miR-200bc/429/548a chr17:9632325 7-mer-m8 16 3pUTR USP43 High_conserved miR-200bc/429/548a chr17:9632570 8-mer 18 3pUTR USP43 High_conserved miR-204/204b/211 chr17:9590142 7-mer-A1 38 CDS USP43 High_conserved miR-204/204b/211 chr17:9631273 7-mer-m8 22 CDS USP43 High_conserved miR-205/205ab chr17:9631331 7-mer-m8 62 CDS USP43 High_conserved miR-214/761/3619-5p chr17:9549049 7-mer-m8 33 CDS USP43 High_conserved miR-214/761/3619-5p chr17:9549325 7-mer-m8 56 CDS USP43 High_conserved miR-214/761/3619-5p chr17:9615365 7-mer-m8 24 CDS USP43 High_conserved miR-217 chr17:9559728 7-mer-m8 20 CDS USP43 High_conserved miR-218/218a chr17:9570063 8-mer 44 CDS USP43 High_conserved miR-218/218a chr17:9615350 7-mer-A1 18 CDS USP43 High_conserved miR-22/22-3p chr17:9596499 7-mer-A1 53 CDS USP43 High_conserved miR-22/22-3p chr17:9632373 7-mer-m8 13 3pUTR USP43 High_conserved miR-24/24ab/24-3p chr17:9632030 7-mer-m8 36 CDS USP43 High_conserved miR-27abc/27a-3p chr17:9549111 7-mer-m8 7 CDS USP43 High_conserved miR-27abc/27a-3p chr17:9631742 7-mer-m8 27 CDS USP43 High_conserved miR-29abcd chr17:9586231 7-mer-A1 44 CDS USP43 High_conserved miR-338/338-3p chr17:9559799 7-mer-A1 42 CDS USP43 High_conserved miR-33a-3p/365/365-3p chr17:9605012 8-mer 53 CDS USP43 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr17:9578234 7-mer-m8 44 CDS USP43 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr17:9604706 8-mer 27 CDS USP43 High_conserved miR-383 chr17:9615312 8-mer 24 CDS USP43 High_conserved miR-125a-5p/125b-5p/351/670/4319 chr17:9549255 7-mer-m8 18 CDS USP43 High_conserved miR-10abc/10a-5p chr17:9603492 7-mer-m8 7 CDS USP43 High_conserved miR-128/128ab chr17:9549110 8-mer 7 CDS USP43 High_conserved miR-128/128ab chr17:9631741 8-mer 27 CDS USP43 High_conserved miR-490-3p chr17:9615404 7-mer-m8 11 CDS USP43 Medium_conserved miR-505/505-3p chr17:9596546 7-mer-A1 44 CDS USP43 Medium_conserved miR-505/505-3p chr17:9631497 7-mer-m8 20 CDS USP43 Medium_conserved miR-542-3p chr17:9570008 7-mer-m8 27 CDS USP43 Medium_conserved miR-542-3p chr17:9596534 7-mer-m8 38 CDS USP43 Medium_conserved miR-542-3p chr17:9632201 7-mer-A1 16 CDS USP43 Medium_conserved miR-543 chr17:9604537 7-mer-m8 27 CDS USP43 Medium_conserved miR-615-3p chr17:9615331 7-mer-m8 27 CDS USP43 Medium_conserved miR-758 chr17:9632203 8-mer 22 CDS USP43 Medium_conserved miR-873 chr17:9549337 7-mer-m8 40 CDS USP43 Medium_conserved miR-873 chr17:9580112 7-mer-m8 51 CDS USP43 Medium_conserved miR-873 chr17:9590134 7-mer-A1 40 CDS USP43 Medium_conserved miR-873 chr17:9615408 8-mer 7 CDS USP43 Medium_conserved miR-874 chr17:9586264 7-mer-m8 44 CDS USP43 Medium_conserved miR-874 chr17:9631698 7-mer-m8 13 CDS USP43 Medium_conserved miR-874 chr17:9632585 8-mer 29 3pUTR USP43 Medium_conserved miR-149 chr17:9580103 7-mer-m8 51 CDS USP43 Medium_conserved miR-149 chr17:9631477 7-mer-m8 29 CDS USP43 Medium_conserved miR-185/882/3473/4306/4644 chr17:9586212 8-mer 31 CDS USP43 Medium_conserved miR-185/882/3473/4306/4644 chr17:9604816 7-mer-A1 51 CDS USP43 Medium_conserved miR-185/882/3473/4306/4644 chr17:9631989 8-mer 11 CDS USP43 Medium_conserved miR-185/882/3473/4306/4644 chr17:9632147 7-mer-m8 51 CDS USP43 Medium_conserved miR-186 chr17:9632271 7-mer-A1 16 CDS USP43 Medium_conserved miR-197 chr17:9604730 7-mer-A1 53 CDS USP43 Medium_conserved miR-197 chr17:9604826 7-mer-A1 44 CDS USP43 Medium_conserved miR-28-5p/708/1407/1653/3139 chr17:9615300 7-mer-m8 58 CDS USP43 Medium_conserved miR-320abcd/4429 chr17:9632305 7-mer-m8 38 CDS USP43 Medium_conserved miR-326/330/330-5p chr17:9604872 8-mer 31 CDS USP43 Medium_conserved miR-326/330/330-5p chr17:9632083 7-mer-m8 20 CDS USP43 Medium_conserved miR-328a/328b-3p chr17:9586192 7-mer-m8 16 CDS USP43 Medium_conserved miR-328a/328b-3p chr17:9631785 7-mer-m8 56 CDS USP43 Medium_conserved miR-339b/339-5p/3586-5p chr17:9603491 7-mer-m8 47 CDS USP43 Medium_conserved miR-361-5p chr17:9590137 7-mer-A1 27 CDS USP43 Medium_conserved miR-370 chr17:9586269 7-mer-m8 53 CDS USP43 Medium_conserved miR-370 chr17:9604501 7-mer-m8 49 CDS USP43 Medium_conserved miR-370 chr17:9604721 7-mer-m8 60 CDS USP43 Medium_conserved miR-370 chr17:9632170 7-mer-m8 27 CDS USP43 Medium_conserved miR-376c/741-5p chr17:9632976 8-mer 42 3pUTR USP43 Medium_conserved miR-377 chr17:9632331 7-mer-m8 24 3pUTR USP43 Medium_conserved miR-378/422a/378bcdefhi chr17:9632301 7-mer-m8 58 CDS USP43 Medium_conserved miR-379/1193-5p/3529 chr17:9615293 7-mer-A1 11 CDS USP43 Medium_conserved miR-421 chr17:9631496 7-mer-m8 20 CDS USP43 Medium_conserved miR-433 chr17:9549287 7-mer-A1 62 CDS USP43 Medium_conserved miR-485-5p/1698/1703/1962 chr17:9615434 7-mer-m8 36 CDS USP43 Medium_conserved miR-488 chr17:9570057 7-mer-A1 58 CDS USP43 Medium_conserved miR-488 chr17:9583649 8-mer 18 CDS USP43 Medium_conserved miR-488 chr17:9632244 7-mer-m8 11 CDS USP43 Medium_conserved miR-491-5p chr17:9578230 7-mer-m8 29 CDS USP43 Medium_conserved miR-491-5p chr17:9586170 7-mer-m8 36 CDS USP43 Medium_conserved miR-494 chr17:9549283 7-mer-A1 40 CDS

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score USP43 RAID00187175 hsa-miR-22-3p miRNA MIMAT0000077 USP43 mRNA 124739 CLIP-seq//Prediction 0.6308 USP43 RAID00254058 hsa-miR-4666a-3p miRNA MIMAT0019742 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID00304878 hsa-miR-3677-5p miRNA MIMAT0019221 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID00338531 hsa-miR-200b-3p miRNA MIMAT0000318 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID00736566 hsa-miR-26a-5p miRNA MIMAT0000082 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID00747668 hsa-miR-5588-3p miRNA MIMAT0022296 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID00803945 hsa-miR-429 miRNA MIMAT0001536 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID00880510 hsa-miR-378a-3p miRNA MIMAT0000732 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID00973753 hsa-miR-135b-5p miRNA MIMAT0000758 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID00978449 hsa-miR-205-5p miRNA MIMAT0000266 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID01091928 hsa-miR-376b-3p miRNA MIMAT0002172 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID01168544 hsa-miR-493-5p miRNA MIMAT0002813 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID01169417 hsa-miR-300 miRNA MIMAT0004903 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID01301982 hsa-miR-6882-3p miRNA MIMAT0027665 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID01350480 hsa-miR-876-5p miRNA MIMAT0004924 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID01540709 hsa-miR-376a-3p miRNA MIMAT0000729 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID01602491 hsa-miR-3189-3p miRNA MIMAT0015071 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID01619818 hsa-miR-875-5p miRNA MIMAT0004922 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID01859184 hsa-miR-26b-5p miRNA MIMAT0000083 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID01970364 hsa-miR-8076 miRNA MIMAT0031003 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID02062967 hsa-miR-186-5p miRNA MIMAT0000456 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID02086638 hsa-miR-200c-3p miRNA MIMAT0000617 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID02142306 hsa-miR-6871-3p miRNA MIMAT0027643 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID02385360 hsa-miR-7976 miRNA MIMAT0031179 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID02723444 hsa-miR-216a-5p miRNA MIMAT0000273 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID02731708 hsa-miR-144-3p miRNA MIMAT0000436 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID02762936 hsa-miR-376c-3p miRNA MIMAT0000720 USP43 mRNA 124739 Prediction 0.2202 USP43 RAID02823622 hsa-miR-377-3p miRNA MIMAT0000730 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID02911760 hsa-miR-182-5p miRNA MIMAT0000259 USP43 mRNA 124739 CLIP-seq//Prediction 0.6308 USP43 RAID03023320 hsa-miR-155-5p miRNA MIMAT0000646 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID03298098 hsa-miR-1290 miRNA MIMAT0005880 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID03570492 hsa-miR-135a-5p miRNA MIMAT0000428 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID03619637 hsa-miR-4535 miRNA MIMAT0019075 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID03953029 hsa-miR-381-3p miRNA MIMAT0000736 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID03955052 hsa-miR-374c-5p miRNA MIMAT0018443 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID03999408 hsa-miR-422a miRNA MIMAT0001339 USP43 mRNA 124739 Prediction 0.1828 USP43 RAID04000816 hsa-miR-874-3p miRNA MIMAT0004911 USP43 mRNA 124739 Prediction 0.2381 USP43 RAID04009177 hsa-miR-655-3p miRNA MIMAT0003331 USP43 mRNA 124739 Prediction 0.2202