UBA7
DNA & RNA Element - UTRdb
Gene NameTypeASPicDBUTRaspicRefseq IDGenome
UBA73'UTR9ab81e1b43BA115767NM_003335chr3:49817642-49826223:-
UBA73'UTR06df80fe9dNM_003335chr3:49817637-49822619:-
UBA73'UTRd25ae1e847NM_003335chr3:49823911-49826223:-
UBA73'UTRb7d16eaab8NM_003335chr3:49817637-49821547:-
UBA73'UTRfebd8a2adfNM_003335chr3:49824845-49826378:-
UBA73'UTR84452c5ec2NM_003335chr3:49824845-49826223:-
UBA73'UTR2e67d6fdc6NM_003335chr3:49824845-49826223:-
UBA73'UTRfc4bff87cbNM_003335chr3:49822416-49823108:-
UBA75'UTR9ab81e1b43CA181716NM_003335chr3:49817746-49826395:-
DNA & RNA Element - circBase
circRNA IDChromStartEndStrand
hsa_circ_0065752chr34984794949849449-
hsa_circ_0065746chr34984545249848524-
hsa_circ_0065747chr34984682249851080-
hsa_circ_0065753chr34984818449849976-
hsa_circ_0001303chr34984919749849279+
hsa_circ_0065751chr34984697449849976-
hsa_circ_0065754chr34984818449851391-
hsa_circ_0065749chr34984697449848265-
hsa_circ_0065748chr34984697449847861-
hsa_circ_0065750chr34984697449849449-
DNA & RNA Element - circRNADb
circRNA IDChromStartEndStrandSamples
hsa_circ_06750chr34984794949849639-glioblastoma
DNA & RNA Element - CircNet
Circ IDGITPositionExpressSymbolEntrezCategoryStrandRefered Name
hsa-circ-UBA7-antisense.1NM_003335Tchr3:49845582-49846583expressedUBA77318protein-coding+not_available
hsa-circ-UBA7-antisense.2NM_003335Tchr3:49850956-49851063expressedUBA77318protein-coding+not_available
hsa-circ-UBA7-overlap.1NM_003335Tchr3:49850391-49850671expressedUBA77318protein-coding-not_available
hsa-circ-UBA7-overlap.2NM_003335Tchr3:49848783-49849391expressedUBA77318protein-coding-not_available
hsa-circ-UBA7.1NM_003335Tchr3:49848184-49849976expressedUBA77318protein-coding-hsa_circ_0065753
hsa-circ-UBA7.10NM_003335Tchr3:49845452-49848524expressedUBA77318protein-coding-hsa_circ_0065746
hsa-circ-UBA7.11NM_003335Tchr3:49845452-49846592expressedUBA77318protein-coding-not_available
hsa-circ-UBA7.12NM_003335Tchr3:49846974-49847158expressedUBA77318protein-coding-not_available
hsa-circ-UBA7.2NM_003335Tchr3:49846974-49848265expressedUBA77318protein-coding-hsa_circ_0065749
hsa-circ-UBA7.3NM_003335Tchr3:49846822-49851080expressedUBA77318protein-coding-hsa_circ_0065747
hsa-circ-UBA7.4NM_003335Tchr3:49848705-49848888expressedUBA77318protein-coding-not_available
hsa-circ-UBA7.5NM_003335Tchr3:49846974-49849449expressedUBA77318protein-coding-hsa_circ_0065750
hsa-circ-UBA7.6NM_003335Tchr3:49846974-49847861expressedUBA77318protein-coding-hsa_circ_0065748
hsa-circ-UBA7.7NM_003335Tchr3:49847949-49849449expressedUBA77318protein-coding-hsa_circ_0065752
hsa-circ-UBA7.8NM_003335Tchr3:49848184-49851391expressedUBA77318protein-coding-hsa_circ_0065754
hsa-circ-UBA7.9NM_003335Tchr3:49846974-49849976expressedUBA77318protein-coding-hsa_circ_0065751
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G032572UBA7Homo sapiens7318
G115972MIR5193Homo sapiens100847079
DNA & RNA Element - TargetScan
Gene NameUTR Region StartUTR Region EndAIRTotal Normalized 3P-seq-tags & PseudocountsStrandhg19_chromosomeGenome StartGenome End
UBA7; UBE1L; UBE211011005.01-chr34984263949842740
UBA7; UBE1L; UBE21021030.25.01-chr34984263749842639
DNA & RNA Element - RepTar
Gene NamemiRNABeginEndProfile
UBE1Lhsa-miR-515-3pbeg:59end:79pic:3' TTGCGAGGTTTTCTTCCGTGAG 5'& || ||| || |||||||| &5' ---GC-CCAC-AGTAGGCACTC 3'
UBE1Lhsa-miR-542-3pbeg:3end:21pic:3' AAAGTCAATAGTTAGACAGTGT 5'& ||| || ||||||| &5' ---CAGC---CACCCTGTCAC- 3'
UBE1Lhsa-miR-647beg:2end:13pic:3' CTTCCTTCACTCACGTCGGTG 5'& |||||||| &5' -------------GCAGCCAC 3'
UBE1Lhsa-miR-4297beg:92end:101pic:3' GTGTCTGTCCTTCCGT 5'& |||||||| &5' -------AGGAAGGC- 3'
UBE1Lhsa-miR-1207-5pbeg:3end:20pic:3' GGGGAGGGTCGGAGGGACGGT 5'& ||||| |||||.|| &5' -------CAGCCACCCTGTCA 3'
UBE1Lhsa-miR-1262beg:10end:24pic:3' TAGGAAGATGTTTAAGTGGGTA 5'& ||| |||||.| &5' --CCTG--------TCACCTA- 3'
UBE1Lhsa-miR-135bstarbeg:40end:57pic:3' GGGTACCGAAAATCGGGATGTA 5'& |||| ||||||.||| &5' CCCA--------AGCCCTGCAT 3'
UBE1Lhsa-miR-1908beg:0end:19pic:3' CTGGTTAG--CGGCAGGGGCGGC 5'& ||| ||| |||.|.| &5' ---CAAGGCAGCCA-CCCTGTC- 3'
UBE1Lhsa-miR-1909starbeg:59end:80pic:3' GTCCCGTCCGTGG---CCGTGAGT 5'& || ||| |||||||| &5' ----GCC--CACAGTAGGCACTCA 3'
UBE1Lhsa-miR-202beg:39end:58pic:3' AAGGGTACGGGATATGGAGA 5'& ||||| |||||. |.. &5' -TCCCAAGCCCTGCATT--- 3'
UBE1Lhsa-miR-24-2starbeg:54end:76pic:3' GACACAAAGTCGA--GTCATCCGT 5'& ||| ||| ||||||||| &5' ---TGTA--AGCCCACAGTAGGCA 3'
UBE1Lhsa-miR-27astarbeg:39end:66pic:3' ACGAGTGTTCGT--CG----ATTCGGGA 5'& || ||||| || ||||||| &5' ---TCCCAAGCCCTGCATTGTAAGCCC- 3'
UBE1Lhsa-miR-302dstarbeg:78end:97pic:3' CGTTCACGGAGGTACAATTTCA 5'& .|| |||. |||||||| &5' -TAAATGCT----TGTTAAAG- 3'
UBE1Lhsa-miR-320cbeg:8end:27pic:3' TGGGAGAGTTGGGTCGAAAA 5'& ||||| || |||.|||| &5' ACCCTGTC-ACCTAGCT--- 3'
UBE1Lhsa-miR-33bstarbeg:55end:78pic:3' CCCGACGTGACGG----C-TCCGTGAC 5'& .||.| ||| | ||||||| &5' ---TTGTAA-GCCCACAGTAGGCACT- 3'
UBE1Lhsa-miR-370beg:59end:75pic:3' TGGTCCAAGGTGGG-GTCGTCCG 5'& .||| |||.|||| &5' ----------GCCCACAGTAGGC 3'
UBE1Lhsa-miR-4265beg:47end:70pic:3' GGGTCTCG--AC--TCGGGTGTC 5'& ||| || || ||||||||| &5' CCCT--GCATTGTAAGCCCACAG 3'
UBE1Lhsa-miR-4296beg:47end:69pic:3' ACTC-GGAC-------TCGGGTGTA 5'& | |||| |||||||| &5' ---GCCCTGCATTGTAAGCCCACA- 3'
UBE1Lhsa-miR-4318beg:50end:71pic:3' TCGT-ACA--TGGGTGTCAC 5'& ||| ||| .|||||||| &5' -GCATTGTAAGCCCACAGT- 3'
UBE1Lhsa-miR-4322beg:46end:70pic:3' GGGGTGCGCGAC--TCGGGTGTC 5'& ||| .|| .|| ||||||||| &5' -CCC-TGCATTGTAAGCCCACAG 3'
UBE1Lhsa-miR-550beg:50end:78pic:3' CCCG-AGAATGAGGGA---GTCCGTGA 5'& || |. || ||| .||||||| &5' --GCATTGTAAGCCCACAGTAGGCACT 3'
UBE1Lhsa-miR-610beg:9end:29pic:3' AGGGTCGTGTGTAAATCGAGT 5'& ||| |. ||| ||||||| &5' -CCCTGT-CACC--TAGCTCA 3'
UBE1Lhsa-miR-632beg:60end:77pic:3' AGGGTGTCCTTCGTCTGTG 5'& ||||| ||.||.||| &5' -CCCAC----AGTAGGCAC 3'
UBE1Lhsa-miR-769-3pbeg:25end:47pic:3' TTGGTTCTGGGGCCTCTAGGGTC 5'& ||. .|| ||||||| ||||| &5' AATGGAG-CCCCGGA--TCCCA- 3'
UBE1Lhsa-miR-934beg:54end:76pic:3' GGTCACAGA-GGTCATCATCTGT 5'& ||| || |||||.|| &5' ----TGTAAGCCCACAGTAGGCA 3'
DNA & RNA Element - miRcode
Gene NameTypemicroRNASeed PositionSeed TypeTotal Cons%Tr Region
UBA7High_conservedmiR-503chr3:498435187-mer-m87CDS, ncRNA
UBA7High_conservedmiR-130ac/301ab/301b/301b-3p/454/721/4295/3666chr3:498427517-mer-A153CDS, ncRNA
UBA7High_conservedmiR-130ac/301ab/301b/301b-3p/454/721/4295/3666chr3:498513167-mer-m8275pUTR, ncRNA
UBA7High_conservedmiR-132/212/212-3pchr3:498480187-mer-m838CDS, ncRNA
UBA7High_conservedmiR-7/7abchr3:498484597-mer-m838CDS, ncRNA
UBA7High_conservedmiR-138/138abchr3:498513567-mer-A1225pUTR, ncRNA
UBA7High_conservedmiR-140/140-5p/876-3p/1244chr3:498453157-mer-A136CDS
UBA7High_conservedmiR-140/140-5p/876-3p/1244chr3:498488417-mer-m836CDS, ncRNA
UBA7High_conservedmiR-141/200achr3:498482307-mer-m840CDS, ncRNA
UBA7High_conservedmiR-142-3pchr3:498453137-mer-A131CDS
UBA7High_conservedmiR-145chr3:498470307-mer-A111CDS, ncRNA
UBA7High_conservedmiR-145chr3:498488147-mer-A113CDS, ncRNA
UBA7High_conservedmiR-148ab-3p/152chr3:498493507-mer-m840CDS, ncRNA
UBA7High_conservedmiR-148ab-3p/152chr3:498513157-mer-m875pUTR, ncRNA
UBA7High_conservedmiR-183chr3:498480887-mer-m842CDS, ncRNA
UBA7High_conservedlet-7/98/4458/4500chr3:498436058-mer13ncRNA
UBA7High_conservedlet-7/98/4458/4500chr3:498452048-mer16CDS
UBA7High_conservedlet-7/98/4458/4500chr3:498481877-mer-m849CDS, ncRNA
UBA7High_conservedmiR-18ab/4735-3pchr3:498471107-mer-A17CDS, ncRNA
UBA7High_conservedmiR-18ab/4735-3pchr3:498505487-mer-m813CDS, ncRNA
UBA7High_conservedmiR-196abcchr3:498452057-mer-m816CDS
UBA7High_conservedmiR-196abcchr3:498452267-mer-A116CDS
UBA7High_conservedmiR-196abcchr3:498468997-mer-A111ncRNA
UBA7High_conservedmiR-196abcchr3:498481887-mer-m842CDS, ncRNA
UBA7High_conservedmiR-199ab-5pchr3:498470317-mer-A111CDS, ncRNA
UBA7High_conservedmiR-199ab-5pchr3:498477797-mer-A122CDS, ncRNA
UBA7High_conservedmiR-199ab-5pchr3:498488037-mer-A120CDS, ncRNA
UBA7High_conservedmiR-199ab-5pchr3:498488157-mer-A113CDS, ncRNA
UBA7High_conservedmiR-19abchr3:498513177-mer-m8205pUTR, ncRNA
UBA7High_conservedmiR-200bc/429/548achr3:498475287-mer-m89CDS, ncRNA
UBA7High_conservedmiR-214/761/3619-5pchr3:498433977-mer-m84CDS, ncRNA
UBA7High_conservedmiR-214/761/3619-5pchr3:498464147-mer-A138CDS, ncRNA
UBA7High_conservedmiR-214/761/3619-5pchr3:498464937-mer-A140CDS, ncRNA
UBA7High_conservedmiR-214/761/3619-5pchr3:498469957-mer-A142CDS, ncRNA
UBA7High_conservedmiR-214/761/3619-5pchr3:498506937-mer-m833CDS, ncRNA
UBA7High_conservedmiR-214/761/3619-5pchr3:498509307-mer-m851CDS, ncRNA
UBA7High_conservedmiR-217chr3:498487277-mer-A116CDS, ncRNA
UBA7High_conservedmiR-22/22-3pchr3:498455008-mer24CDS, ncRNA
UBA7High_conservedmiR-22/22-3pchr3:498465627-mer-m847CDS, ncRNA
UBA7High_conservedmiR-122/122a/1352chr3:498479227-mer-m811ncRNA
UBA7High_conservedmiR-24/24ab/24-3pchr3:498469227-mer-m833ncRNA
UBA7High_conservedmiR-24/24ab/24-3pchr3:498471257-mer-A19CDS, ncRNA
UBA7High_conservedmiR-27abc/27a-3pchr3:498495467-mer-m847CDS, ncRNA
UBA7High_conservedmiR-27abc/27a-3pchr3:498498637-mer-m816CDS, ncRNA
UBA7High_conservedmiR-29abcdchr3:498428048-mer22CDS, ncRNA
UBA7High_conservedmiR-29abcdchr3:498490367-mer-m816ncRNA
UBA7High_conservedmiR-29abcdchr3:498505907-mer-m856CDS, ncRNA
UBA7High_conservedmiR-31chr3:498476187-mer-A124ncRNA
UBA7High_conservedmiR-103a/107/107abchr3:498433967-mer-A129CDS, ncRNA
UBA7High_conservedmiR-103a/107/107abchr3:498505817-mer-A17CDS, ncRNA
UBA7High_conservedmiR-124/124ab/506chr3:498452417-mer-m840CDS
UBA7High_conservedmiR-338/338-3pchr3:498475687-mer-A167CDS, ncRNA
UBA7High_conservedmiR-338/338-3pchr3:498487347-mer-m818CDS, ncRNA
UBA7High_conservedmiR-338/338-3pchr3:498491037-mer-A111ncRNA
UBA7High_conservedmiR-34ac/34bc-5p/449abc/449c-5pchr3:498427677-mer-m818CDS, ncRNA
UBA7High_conservedmiR-34ac/34bc-5p/449abc/449c-5pchr3:498493737-mer-m833CDS, ncRNA
UBA7High_conservedmiR-375chr3:498458737-mer-A111CDS, ncRNA
UBA7High_conservedmiR-383chr3:498492057-mer-m80ncRNA
UBA7High_conservedmiR-425/425-5p/489chr3:498505418-mer4CDS, ncRNA
UBA7High_conservedmiR-125a-5p/125b-5p/351/670/4319chr3:498428687-mer-m840CDS, ncRNA
UBA7High_conservedmiR-125a-5p/125b-5p/351/670/4319chr3:498465018-mer44CDS, ncRNA
UBA7High_conservedmiR-125a-5p/125b-5p/351/670/4319chr3:498469377-mer-m822ncRNA
UBA7High_conservedmiR-125a-5p/125b-5p/351/670/4319chr3:498510417-mer-A129CDS, ncRNA
UBA7High_conservedmiR-10abc/10a-5pchr3:498489697-mer-m827ncRNA
UBA7High_conservedmiR-455-5pchr3:498475567-mer-m813CDS, ncRNA
UBA7High_conservedmiR-128/128abchr3:498495477-mer-A147CDS, ncRNA
UBA7High_conservedmiR-128/128abchr3:498498647-mer-A116CDS, ncRNA
UBA7High_conservedmiR-128/128abchr3:498501347-mer-m824CDS
UBA7High_conservedmiR-490-3pchr3:498512257-mer-m8115pUTR, ncRNA
UBA7Medium_conservedmiR-504/4725-5pchr3:498510317-mer-m816CDS, ncRNA
UBA7Medium_conservedmiR-505/505-3pchr3:498480128-mer7CDS, ncRNA
UBA7Medium_conservedmiR-542-3pchr3:498427207-mer-m873pUTR, ncRNA
UBA7Medium_conservedmiR-542-3pchr3:498512847-mer-m8165pUTR, ncRNA
UBA7Medium_conservedmiR-592/599chr3:498496097-mer-m831CDS, ncRNA
UBA7Medium_conservedmiR-592/599chr3:498512707-mer-A145pUTR, ncRNA
UBA7Medium_conservedmiR-758chr3:498492197-mer-A19ncRNA
UBA7Medium_conservedmiR-873chr3:498466107-mer-m87ncRNA
UBA7Medium_conservedmiR-873chr3:498513247-mer-m895pUTR, ncRNA
UBA7Medium_conservedmiR-874chr3:498513017-mer-m8115pUTR, ncRNA
UBA7Medium_conservedmiR-876-5p/3167chr3:498492157-mer-A113ncRNA
UBA7Medium_conservedmiR-136chr3:498427067-mer-m8163pUTR, ncRNA
UBA7Medium_conservedmiR-136chr3:498499157-mer-A19CDS, ncRNA
UBA7Medium_conservedmiR-149chr3:498510357-mer-m813CDS, ncRNA
UBA7Medium_conservedmiR-185/882/3473/4306/4644chr3:498479297-mer-A19ncRNA
UBA7Medium_conservedmiR-197chr3:498452667-mer-m84CDS
UBA7Medium_conservedmiR-202-3pchr3:498436057-mer-A113ncRNA
UBA7Medium_conservedmiR-202-3pchr3:498452047-mer-A116CDS
UBA7Medium_conservedmiR-224chr3:498499037-mer-m849CDS, ncRNA
UBA7Medium_conservedmiR-224chr3:498501537-mer-m871CDS
UBA7Medium_conservedmiR-28-5p/708/1407/1653/3139chr3:498484417-mer-m816CDS, ncRNA
UBA7Medium_conservedmiR-290-5p/292-5p/371-5p/293chr3:498458218-mer47CDS, ncRNA
UBA7Medium_conservedmiR-290-5p/292-5p/371-5p/293chr3:498512217-mer-m895pUTR, ncRNA
UBA7Medium_conservedmiR-299/299-3p/3563-3pchr3:498480017-mer-A124CDS, ncRNA
UBA7Medium_conservedmiR-326/330/330-5pchr3:498453587-mer-m836CDS
UBA7Medium_conservedmiR-326/330/330-5pchr3:498467238-mer13ncRNA
UBA7Medium_conservedmiR-326/330/330-5pchr3:498494027-mer-m838CDS, ncRNA
UBA7Medium_conservedmiR-328a/328b-3pchr3:498490147-mer-m820ncRNA
UBA7Medium_conservedmiR-328a/328b-3pchr3:498499397-mer-A113CDS, ncRNA
UBA7Medium_conservedmiR-335/335-5pchr3:498466047-mer-m827ncRNA
UBA7Medium_conservedmiR-335/335-5pchr3:498470397-mer-m822CDS, ncRNA
UBA7Medium_conservedmiR-335/335-5pchr3:498507567-mer-m811CDS, ncRNA
UBA7Medium_conservedmiR-342-3pchr3:498479447-mer-m842ncRNA
UBA7Medium_conservedmiR-342-3pchr3:498495457-mer-A118CDS, ncRNA
UBA7Medium_conservedmiR-346chr3:498471368-mer24CDS, ncRNA
UBA7Medium_conservedmiR-370chr3:498490187-mer-m89ncRNA
UBA7Medium_conservedmiR-370chr3:498507977-mer-A118CDS, ncRNA
UBA7Medium_conservedmiR-370chr3:498513047-mer-m8135pUTR, ncRNA
UBA7Medium_conservedmiR-378/422a/378bcdefhichr3:498436857-mer-m831ncRNA
UBA7Medium_conservedmiR-382chr3:498496037-mer-m827CDS, ncRNA
UBA7Medium_conservedmiR-384/384-3pchr3:498436708-mer40ncRNA
UBA7Medium_conservedmiR-421chr3:498488837-mer-m831CDS
UBA7Medium_conservedmiR-125a-3p/1554chr3:498433578-mer18CDS, ncRNA
UBA7Medium_conservedmiR-125a-3p/1554chr3:498435868-mer31CDS, ncRNA
UBA7Medium_conservedmiR-125a-3p/1554chr3:498510607-mer-m818CDS, ncRNA
UBA7Medium_conservedmiR-431chr3:498465897-mer-A144CDS, ncRNA
UBA7Medium_conservedmiR-431chr3:498470587-mer-m840CDS, ncRNA
UBA7Medium_conservedmiR-431chr3:498511687-mer-A116CDS, ncRNA
UBA7Medium_conservedmiR-485-5p/1698/1703/1962chr3:498492697-mer-m829ncRNA
UBA7Medium_conservedmiR-485-5p/1698/1703/1962chr3:498509598-mer42CDS, ncRNA
UBA7Medium_conservedmiR-491-5pchr3:498501237-mer-A122CDS
UBA7Medium_conservedmiR-491-5pchr3:498509417-mer-m820CDS, ncRNA
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
UBA7RAID00286731hsa-miR-519e-3pmiRNAMIMAT0002829UBA7mRNA7318Prediction0.1828
UBA7RAID00644024hsa-miR-33b-3pmiRNAMIMAT0004811UBA7mRNA7318Prediction0.1828
UBA7RAID00672694hsa-miR-296-3pmiRNAMIMAT0004679UBA7mRNA7318Prediction0.1828
UBA7RAID01495811hsa-miR-515-3pmiRNAMIMAT0002827UBA7mRNA7318Prediction0.1828
UBA7RAID01665940hsa-miR-4508miRNAMIMAT0019045UBA7mRNA7318Prediction0.1828
UBA7RAID01820782hsa-miR-4296miRNAMIMAT0016845UBA7mRNA7318Prediction0.1828
UBA7RAID01938468hsa-miR-4297miRNAMIMAT0016846UBA7mRNA7318Prediction0.1828
UBA7RAID02133320hsa-miR-542-3pmiRNAMIMAT0003389UBA7mRNA7318Prediction0.1828
UBA7RAID03214599hsa-miR-5581-5pmiRNAMIMAT0022275UBA7mRNA7318Prediction0.1828
UBA7RAID04801228MALAT1lncRNA378938UBA7protein7318Microarray//RNA-seq0.6606