DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome TRIML1 3'UTR 5101fa1050 BA113781 NM_178556 chr4:189305521-189305643:+ TRIML1 5'UTR 5101fa1050 CA178616 NM_178556 chr4:189297592-189297706:+ TRIML1 5'UTR 4bd9e4fb47 NM_178556 chr4:189297592-189297893:+

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004508 hsa-miR-92a-2* 339976 TRIML1 cauuacguuGUUUAGGGGUGGg |: | ||||||| auaaacuccCGUAACCCCACCc 2 14 101 122 [hg19:4:189068627-189068648:+] 0.5279 145 7 -20.11 -0.9058 MIMAT0004551 hsa-miR-30d* 339976 TRIML1 cgUCGU--UUGUAG---ACU-GACUUUc ||:| ||::|| ||| |||||| acAGUAUUAAUGUCAGGUGAUCUGAAAu 2 21 75 102 [hg19:4:189068601-189068628:+] 0.5602 122 6 -14.49 -0.4749 MIMAT0009197 hsa-miR-205* 339976 TRIML1 cuUGAAGUGAGGU-GACUUUAg |: ||| : | ||||||| uaAUGUCAGGUGAUCUGAAAUa 2 20 82 103 [hg19:4:189068608-189068629:+] 0.5602 146 7 -9.38 -1.0792 MIMAT0002888 hsa-miR-532-5p 339976 TRIML1 ugccaggaUGUGAGUUCCGUAc ||: | ||||||| cuauuaagACGAUGAAGGCAUc 2 15 52 73 [hg19:4:189068578-189068599:+] 0.5852 150 7 -12.01 -0.4748 MIMAT0003276 hsa-miR-608 339976 TRIML1 ugccUCGACAGGGUUGUGGUGGGGa | || | :||| ||||||| aauaAACUCCCGUAACCCCACCCC- 2 22 100 123 [hg19:4:189068626-189068649:+] 0.5279 161 7 -23.16 -0.5975 MIMAT0003303 hsa-miR-633 339976 TRIML1 aaauaacaccaucuaUGAUAAUc ||||||| ugagaccaagacacaACUAUUAa 2 9 36 58 [hg19:4:189068562-189068584:+] 0.5839 140 7 -5.25 -0.9382 MIMAT0003306 hsa-miR-636 339976 TRIML1 acGCCCGC--CCUGCUC--GUUC-GUGu |||||| | :||| |||| ||| agCGGGCGAUGUCUGAGACCAAGACACa 2 22 23 50 [hg19:4:189068549-189068576:+] 0.5839 123 0 -29.63 -0.9328 MIMAT0003337 hsa-miR-659 339976 TRIML1 accCCUGGGAGGGACU-UGGUUc ||:| | :|||| ||||| agcGGGCGAUGUCUGAGACCAAg 2 20 23 45 [hg19:4:189068549-189068571:+] 0.5839 127 0 -23.48 -0.4629 MIMAT0007349 hsa-miR-1471 339976 TRIML1 uguGGAC-CGAGGUGUG-CGCCCg |||| || | ||| ||||| ugcCCUGAGC-CGUCACAGCGGGc 2 20 7 29 [hg19:4:189068533-189068555:+] 0.5826 120 0 -31.47 -0.1079 MIMAT0015045 hsa-miR-3170 339976 TRIML1 ugacagacAGAGUCUUGGGGUc || |: ||||||| aaauaaacUCCCGUAACCCCAc 2 15 99 120 [hg19:4:189068625-189068646:+] 0.5279 150 7 -13.85 -0.1174 MIMAT0000266 hsa-miR-205 339976 TRIML1 gucugaggccaccUUACUUCCu :||||||| caacuauuaagacGAUGAAGGc 2 10 49 70 [hg19:4:189068575-189068596:+] 0.5852 141 7 -12.78 -0.5028 MIMAT0000275 hsa-miR-218 339976 TRIML1 ugUAC-CAAUCUAGUUC-GUGUu ||| | ||| |||| |||| cgAUGUCUGAGACCAAGACACAa 2 20 29 51 [hg19:4:189068555-189068577:+] 0.5839 126 0 -14.40 -1.0271 MIMAT0000318 hsa-miR-200b 339976 TRIML1 aguaguaaUGGUCCGUCAUAAu |:| | ||||||| augaaggcAUC-GACAGUAUUa 2 15 63 83 [hg19:4:189068589-189068609:+] 0.5852 144 7 -12.72 -0.9587 MIMAT0000617 hsa-miR-200c 339976 TRIML1 aggUAGUAAUG-GGCCGUCAUAAu || | :| :|| ||||||| acgAUGAAGGCAUCGACAGUAUUa 2 21 60 83 [hg19:4:189068586-189068609:+] 0.5852 151 7 -22.65 -0.9587 MIMAT0001536 hsa-miR-429 339976 TRIML1 ugccaaaaUGGUCUGUCAUAAu |:| ||||||||| augaaggcAUC-GACAGUAUUa 2 15 63 83 [hg19:4:189068589-189068609:+] 0.5852 152 7 -16.73 -0.9587 MIMAT0003267 hsa-miR-599 339976 TRIML1 caaACUAUUUGACUGUGUUg ||| | ||||||| gucUGAGACCAAGACACAAc 2 18 33 52 [hg19:4:189068559-189068578:+] 0.5839 145 7 -14.06 -0.9182

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G051005 TRIML1 Homo sapiens 339976

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End TRIML1; RNF209 1 250 100 5.01 + chr4 189068526 189068776

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile TRIML1 hsa-miR-3170 beg:103 end:120 pic:3' TGACAGACAGAGT-C-TTGGGGTC 5'& ||| | ||||||| &5' ---------CTCCCGTAACCCCA- 3' TRIML1 hsa-miR-200c beg:66 end:84 pic:3' AGGTAGTAATG-GGCCGTCATAAT 5'& .| .|| |||||||| &5' ---------GCATCGACAGTATTA 3' TRIML1 hsa-miR-92a-2star beg:108 end:122 pic:3' CATTACGTTGTTTAGGGGTGGG 5'& |.|| |||||||| &5' -----GTAA-----CCCCACCC 3' TRIML1 hsa-miR-1266 beg:1 end:16 pic:3' TCGGGACAAGATGT-CGGGACTCC 5'& .|. |||||||| &5' -----------GCGTGCCCTGAG- 3' TRIML1 hsa-miR-24 beg:0 end:18 pic:3' GACAAGGACGACTTGACTCGGT 5'& | | ||| ||||||| &5' --GGGCGTGCC---CTGAGCC- 3' TRIML1 ebv-miR-BART11-5p beg:20 end:39 pic:3' GTTGATCGCGTGGTTTGACAGACT 5'& |||| .| | ||||||| &5' -----AGCGGGCGA---TGTCTGA 3' TRIML1 ebv-miR-BART21-3p beg:34 end:55 pic:3' TTTGTGGTCACCCGTGTTGATC 5'& .| |||| | |||||||| &5' -GAGACCAA--GACACAACTA- 3' TRIML1 ebv-miR-BART4 beg:73 end:93 pic:3' TCGTGTGGTCGTC---GTAGTCCAG 5'& |||.| ..|||||| &5' -------CAGTATTAATGTCAGGT- 3' TRIML1 hsa-miR-599 beg:33 end:53 pic:3' CAAACTATTTGACTGTGTTG 5'& ||| |||||||| &5' ---TGAGACCAAGACACAAC 3' TRIML1 hsa-miR-3127 beg:1 end:15 pic:3' GAAGGGTAAGGTGTTCGGGACTA 5'& .|. ||||||| &5' -----------GCGTGCCCTGA- 3' TRIML1 hsa-miR-1204 beg:27 end:50 pic:3' TATTAC---CTCTGGTCCGGTGCT 5'& .||| ||||||| | ||| &5' --GATGTCTGAGACCAAGACAC-- 3' TRIML1 hsa-miR-1256 beg:20 end:37 pic:3' TCGATCACTCTTCAGTTACGGA 5'& || |.| |.|||.|| &5' ----AGCGGG----CGATGTCT 3' TRIML1 hsa-miR-1278 beg:61 end:84 pic:3' TATCTACTATACG----TGTCATGAT 5'& ||||| || ||||||.|| &5' ---GATGAAG-GCATCGACAGTATTA 3' TRIML1 hsa-miR-1296 beg:0 end:15 pic:3' CCTCTACCTCGGTCCCGGGATT 5'& ||.|| |||||.| &5' ------GGGGCGT--GCCCTGA 3' TRIML1 hsa-miR-1469 beg:0 end:18 pic:3' CCTCGGGCGCGGGGCGCGGCTC 5'& ||.|| |.||||.| |||| &5' GGGGC--GTGCCCTGAGCCG-- 3' TRIML1 hsa-miR-2909 beg:0 end:15 pic:3' GGTTCTCTACAACCGGGATTG 5'& |.| || |||||.| &5' ----GGGGCGT--GCCCTGA- 3' TRIML1 hsa-miR-29b-2star beg:21 end:44 pic:3' GATTCGGT-GGTACA--CTTTGGTC 5'& ||| . | |||| ||.|||| &5' ---AGCGGGCGATGTCTGAGACCA- 3' TRIML1 hsa-miR-3126-3p beg:71 end:94 pic:3' AGACACACTGCC-----TACGGTCTAC 5'& ||| | |||.|||.|| &5' -------GACAGTATTAATGTCAGGTG 3' TRIML1 hsa-miR-3172 beg:102 end:120 pic:3' ATTCCTGACGTT-TTGGGGT 5'& ||| | ||||||| &5' -----ACTCCCGTAACCCCA 3' TRIML1 hsa-miR-3178 beg:0 end:13 pic:3' GCTAGGCCGGCGCGGGG 5'& || ||.||||. &5' ------GGGCGTGCCCT 3' TRIML1 hsa-miR-4253 beg:0 end:13 pic:3' TGGGGGACCTGTACGGGA 5'& ||.|.|||||| &5' -------GGGCGTGCCCT 3' TRIML1 hsa-miR-4297 beg:55 end:72 pic:3' GTGTCTGTC-CTTCCGT 5'& ||||. ||||||| &5' ---AGACGATGAAGGCA 3' TRIML1 hsa-miR-431 beg:27 end:49 pic:3' ACGTACTGCCGGAC----GTTCTGT 5'& || ||. |.||| ||||||| &5' -GC--GAT-GTCTGAGACCAAGACA 3' TRIML1 hsa-miR-452star beg:82 end:95 pic:3' GTGAATGAAGAAAC-GTCTACTC 5'& || |||.||| &5' ------------TGTCAGGTGA- 3' TRIML1 hsa-miR-608 beg:104 end:122 pic:3' TGCCTCGACAGGG--TTGTGGTGGGGA 5'& |||| ||| ||||||| &5' ---------TCCCGTAACCCCACCCC- 3' TRIML1 hsa-miR-758 beg:9 end:25 pic:3' CCAATCACCTGGTCCAGTGTTT 5'& || || ||||||. &5' ------TGAGCC--GTCACAG- 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region TRIML1 High_conserved miR-7/7ab chr4:189068351 7-mer-m8 4 CDS, ncRNA TRIML1 High_conserved miR-139-5p chr4:189060644 7-mer-m8 4 5pUTR TRIML1 High_conserved miR-142-3p chr4:189068146 7-mer-m8 40 CDS, ncRNA TRIML1 High_conserved miR-146ac/146b-5p chr4:189068250 7-mer-A1 4 CDS, ncRNA TRIML1 High_conserved miR-150/5127 chr4:189068139 7-mer-A1 38 CDS, ncRNA TRIML1 High_conserved miR-153 chr4:189064927 7-mer-A1 4 ncRNA TRIML1 High_conserved miR-183 chr4:189068835 7-mer-A1 9 ncRNA TRIML1 High_conserved miR-200bc/429/548a chr4:189068609 8-mer 18 3pUTR, ncRNA TRIML1 High_conserved miR-205/205ab chr4:189063473 7-mer-A1 51 CDS TRIML1 High_conserved miR-205/205ab chr4:189065267 8-mer 13 CDS, ncRNA TRIML1 High_conserved miR-205/205ab chr4:189068596 7-mer-m8 7 3pUTR, ncRNA TRIML1 High_conserved miR-219-5p/508/508-3p/4782-3p chr4:189068706 7-mer-A1 22 3pUTR, ncRNA TRIML1 High_conserved miR-22/22-3p chr4:189060955 7-mer-m8 18 CDS TRIML1 High_conserved miR-22/22-3p chr4:189060996 8-mer 29 CDS TRIML1 High_conserved miR-22/22-3p chr4:189068070 7-mer-A1 7 CDS, ncRNA TRIML1 High_conserved miR-223 chr4:189063558 7-mer-m8 7 CDS TRIML1 High_conserved miR-24/24ab/24-3p chr4:189068544 7-mer-m8 13 3pUTR, ncRNA TRIML1 High_conserved miR-103a/107/107ab chr4:189060972 7-mer-A1 42 CDS TRIML1 High_conserved miR-338/338-3p chr4:189060884 7-mer-A1 64 CDS TRIML1 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr4:189061019 8-mer 4 CDS TRIML1 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr4:189068833 7-mer-A1 11 ncRNA TRIML1 High_conserved miR-383 chr4:189068736 7-mer-A1 27 3pUTR, ncRNA TRIML1 High_conserved miR-425/425-5p/489 chr4:189060600 7-mer-A1 7 5pUTR TRIML1 High_conserved miR-125a-5p/125b-5p/351/670/4319 chr4:189060747 8-mer 44 CDS TRIML1 Medium_conserved miR-544/544ab/544-3p chr4:189068213 7-mer-A1 31 CDS, ncRNA TRIML1 Medium_conserved miR-592/599 chr4:189068578 7-mer-m8 0 3pUTR, ncRNA TRIML1 Medium_conserved miR-873 chr4:189063469 8-mer 51 CDS TRIML1 Medium_conserved miR-874 chr4:189060993 7-mer-m8 9 CDS TRIML1 Medium_conserved miR-876-5p/3167 chr4:189061701 7-mer-m8 36 CDS TRIML1 Medium_conserved miR-136 chr4:189060737 7-mer-A1 49 CDS TRIML1 Medium_conserved miR-185/882/3473/4306/4644 chr4:189061097 8-mer 20 CDS TRIML1 Medium_conserved miR-320abcd/4429 chr4:189060818 7-mer-m8 51 CDS TRIML1 Medium_conserved miR-326/330/330-5p chr4:189061069 7-mer-m8 9 CDS TRIML1 Medium_conserved miR-329/329ab/362-3p chr4:189060830 7-mer-m8 27 CDS TRIML1 Medium_conserved miR-329/329ab/362-3p chr4:189068335 7-mer-A1 7 CDS, ncRNA TRIML1 Medium_conserved miR-335/335-5p chr4:189063635 7-mer-A1 9 CDS TRIML1 Medium_conserved miR-340-5p chr4:189068850 7-mer-A1 9 ncRNA TRIML1 Medium_conserved miR-346 chr4:189068063 7-mer-A1 13 CDS, ncRNA TRIML1 Medium_conserved miR-376abd/376b-3p chr4:189068361 7-mer-A1 20 CDS, ncRNA TRIML1 Medium_conserved miR-377 chr4:189068045 7-mer-A1 22 CDS, ncRNA TRIML1 Medium_conserved miR-378/422a/378bcdefhi chr4:189065219 7-mer-A1 42 CDS, ncRNA TRIML1 Medium_conserved miR-125a-3p/1554 chr4:189060760 7-mer-m8 29 CDS TRIML1 Medium_conserved miR-431 chr4:189068574 7-mer-A1 4 3pUTR, ncRNA TRIML1 Medium_conserved miR-448/448-3p chr4:189064927 7-mer-A1 4 ncRNA TRIML1 Medium_conserved miR-485-5p/1698/1703/1962 chr4:189060707 7-mer-m8 11 5pUTR TRIML1 Medium_conserved miR-485-5p/1698/1703/1962 chr4:189068287 7-mer-m8 7 CDS, ncRNA TRIML1 Medium_conserved miR-494 chr4:189060764 7-mer-A1 58 CDS

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score TRIML1 RAID00720670 hsa-miR-6848-3p miRNA MIMAT0027597 TRIML1 mRNA 339976 Prediction 0.1828 TRIML1 RAID01299196 hsa-miR-429 miRNA MIMAT0001536 TRIML1 mRNA 339976 Prediction 0.1828 TRIML1 RAID01514281 hsa-miR-599 miRNA MIMAT0003267 TRIML1 mRNA 339976 Prediction 0.1828 TRIML1 RAID01591338 hsa-miR-6843-3p miRNA MIMAT0027588 TRIML1 mRNA 339976 Prediction 0.1828 TRIML1 RAID01667101 hsa-miR-3622b-3p miRNA MIMAT0018006 TRIML1 mRNA 339976 Prediction 0.1828 TRIML1 RAID02065543 hsa-miR-205-5p miRNA MIMAT0000266 TRIML1 mRNA 339976 Prediction 0.1828 TRIML1 RAID02243479 hsa-miR-3622a-3p miRNA MIMAT0018004 TRIML1 mRNA 339976 Prediction 0.1828 TRIML1 RAID02414046 hsa-miR-218-5p miRNA MIMAT0000275 TRIML1 mRNA 339976 Prediction 0.1828 TRIML1 RAID03234774 hsa-miR-200b-3p miRNA MIMAT0000318 TRIML1 mRNA 339976 Prediction 0.1828 TRIML1 RAID03806377 hsa-miR-200c-3p miRNA MIMAT0000617 TRIML1 mRNA 339976 Prediction 0.1828