DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004508 hsa-miR-92a-2* 727800 RNF208 cauuacguuguuuAGGGGUGGg |||||||| gcugacccuuccuUCCCCACCa 2 10 78 99 [hg19:9:140114780-140114801:-] 0.5991 145 7 -18.13 -0.8531 MIMAT0005457 hsa-miR-518a-5p 727800 RNF208 cuuucccgaaGGGAAACGuc |:|||||| gccauuaaaaCUCUUUGCca 3 11 147 166 [hg19:9:140114713-140114732:-] 0.7374 126 0 -10.36 -0.3486 MIMAT0005457 hsa-miR-518a-5p 727800 RNF208 cuuuccCGAAGG--GAAACGuc || || |||||| gucgcuGCAGCCAACUUUGCca 3 15 129 150 [hg19:9:140114729-140114750:-] 0.7374 121 0 -9.57 -0.1356 MIMAT0002862 hsa-miR-527 727800 RNF208 cuuucccgaaGGGAAACGuc |:|||||| gccauuaaaaCUCUUUGCca 3 11 147 166 [hg19:9:140114713-140114732:-] 0.7374 126 0 -10.36 -0.3486 MIMAT0002862 hsa-miR-527 727800 RNF208 cuuuccCGAAGG--GAAACGuc || || |||||| gucgcuGCAGCCAACUUUGCca 3 15 129 150 [hg19:9:140114729-140114750:-] 0.7374 121 0 -9.57 -0.1356 MIMAT0003234 hsa-miR-569 727800 RNF208 ugaaaGGUCCUAA--GUAAUUga ||| || |||||| ugcagCCAACUUUGCCAUUAAaa 3 17 134 156 [hg19:9:140114723-140114745:-] 0.7374 123 0 -6.20 -0.1935 MIMAT0003276 hsa-miR-608 727800 RNF208 ugccucgacAGGGUUGUGGUGGGGa |:||::| ||||||| caccauggcUUCCGGCCCCACCCCg 2 17 95 119 [hg19:9:140114760-140114784:-] 0.5991 160 7 -28.01 -0.1350 MIMAT0003317 hsa-miR-647 727800 RNF208 cuuccuuCACUCACGUCGGUg || : |||||||| uggcauuGUCGCUGCAGCCAa 2 15 122 142 [hg19:9:140114737-140114757:-] 0.7374 150 7 -15.36 -1.1608 MIMAT0003330 hsa-miR-654-5p 727800 RNF208 cguGUACAAGACGCC-GGGUGGu |||| :| ||| |||||| cacCAUGGCUUCCGGCCCCACCc 2 20 95 117 [hg19:9:140114762-140114784:-] 0.5991 131 6 -24.54 -0.1238 MIMAT0003880 hsa-miR-671-5p 727800 RNF208 gaGGUCGGGGAGGUCCCGAAGGa || |||| ||| ||||||| uuCCUUCCCCACCAUGGCUUCCg 2 22 86 108 [hg19:9:140114771-140114793:-] 0.5991 173 7 -32.47 -0.2110 MIMAT0004983 hsa-miR-940 727800 RNF208 ccccucgccccCG-GGACGGAa || ||||||| ---------uaGCGCCUGCCUg 2 11 1 13 [hg19:9:140114866-140114878:-] 0.5252 141 7 -16.51 -0.2387 MIMAT0005829 hsa-miR-1184 727800 RNF208 ccuuCGGUAGUUCAGCGACGUCc | |||: |||||||||| gaguGGCAUU--GUCGCUGCAGc 2 20 119 139 [hg19:9:140114740-140114760:-] 0.7374 160 7 -22.99 -0.2511 MIMAT0005922 hsa-miR-1268 727800 RNF208 ggGGGU-GGUGGUG-CGGGc ||:: ||:|||| |||| ugCCUGCCCGCCACUGCCCg 2 17 8 27 [hg19:9:140114852-140114871:-] 0.5252 123 0 -32.95 -0.2259 MIMAT0010133 hsa-miR-2110 727800 RNF208 guGAGUCGCCGGCA---AAGGGGUu | |: :| || | ||||||| cgCCCGCUGACCCUUCCUUCCCCAc 2 21 73 97 [hg19:9:140114782-140114806:-] 0.6071 143 7 -16.86 -0.1580 MIMAT0014986 hsa-miR-3124 727800 RNF208 cugaaACGGAA--GCGGGCG-CUu |||| | ||||||| || ggcccUGCCCUGCCGCCCGCUGAc 2 17 60 83 [hg19:9:140114796-140114819:-] 0.6071 123 0 -24.22 -0.1127 MIMAT0014991 hsa-miR-3128 727800 RNF208 uacucucaaaaaAUGAACGGUcu | :|||||| ugccauuaaaacUCUUUGCCAaa 3 12 146 168 [hg19:9:140114711-140114733:-] 0.7374 123 0 -7.09 -0.2424 MIMAT0015010 hsa-miR-3141 727800 RNF208 agGAGGA--GGUGGGCGG-GAg | ||| |::|||||| || agCGCCUGCCUGCCCGCCACUg 2 18 2 23 [hg19:9:140114856-140114877:-] 0.5252 120 0 -25.36 -0.2540 MIMAT0015017 hsa-miR-1273c 727800 RNF208 cugucccagAGCAAAACAGCGg | | ||||||| caccccgagUGGCAUUGUCGCu 2 14 113 134 [hg19:9:140114745-140114766:-] 0.6643 141 7 -12.81 -0.4300 MIMAT0015040 hsa-miR-3166 727800 RNF208 auccGGUCAUCCGUAACA--GACGc | ||| |||||||| |||| acccCGAGU-GGCAUUGUCGCUGCa 2 20 114 137 [hg19:9:140114742-140114765:-] 0.6643 121 0 -23.24 -0.3334 MIMAT0015065 hsa-miR-3185 727800 RNF208 ggCGUCUGGCUGGC--GGAA-GAAGa || | ||| |:| |||| |||| cuGCCGCCCG-CUGACCCUUCCUUCc 2 22 69 93 [hg19:9:140114786-140114810:-] 0.6071 122 0 -28.41 -0.1182 MIMAT0015089 hsa-miR-3202 727800 RNF208 uaauuucgagaagaGGGAAGGu ||||||| cugccgcccgcugaCCCUUCCu 2 9 69 90 [hg19:9:140114789-140114810:-] 0.6071 140 7 -15.05 -0.4427 MIMAT0016901 hsa-miR-4271 727800 RNF208 ggggUGGAAAAGAAGGGGg ||| || ||||||| gcugACCCUUCCUUCCCCa 2 16 78 96 [hg19:9:140114783-140114801:-] 0.6071 159 7 -21.42 -0.4774 MIMAT0000080 hsa-miR-24 727800 RNF208 gacaagGACGACUUGACUCGGu |||| :||||||| ccgccaCUGC-CCGCUGAGCCu 2 17 15 35 [hg19:9:140114844-140114864:-] 0.5252 146 7 -19.74 -0.4857 MIMAT0000095 hsa-miR-96 727800 RNF208 ucguuuuuacacgaucACGGUUu |||||| ugccauuaaaacucuuUGCCAAa 2 8 146 168 [hg19:9:140114711-140114733:-] 0.7374 120 6 -10.54 -0.2407 MIMAT0000255 hsa-miR-34a 727800 RNF208 uguUGGUCGAUUCUGUGACGGu :|| || | ||||||| ccuGCCUGC-CCGCCACUGCCc 2 20 6 26 [hg19:9:140114853-140114873:-] 0.5252 145 7 -16.92 -0.3299 MIMAT0000259 hsa-miR-182 727800 RNF208 ucACACUCAAGAUG-GUAACGGUUu || | | || | ||||||| uuUGCCAUUAAAACUCUUUGCCAAa 2 23 144 168 [hg19:9:140114711-140114735:-] 0.7374 145 7 -14.66 -1.2846 MIMAT0000441 hsa-miR-9 727800 RNF208 aguAUGUCGAUCUAUUGGUUUCu || | || | :|||||| cauUAAAACU-CUUUGCCAAAGu 2 21 149 170 [hg19:9:140114709-140114730:-] 0.7374 130 6 -9.38 -0.4003 MIMAT0000686 hsa-miR-34c-5p 727800 RNF208 cguuagucGAUUGAU-GUGACGGa ||: | : ||||||| gcgccugcCUGCCCGCCACUGCCc 2 16 3 26 [hg19:9:140114853-140114876:-] 0.5252 142 7 -17.83 -0.3327 MIMAT0001541 hsa-miR-449a 727800 RNF208 uggucgauuguuauGUGACGGu ||||||| gccugccugcccgcCACUGCCc 2 9 5 26 [hg19:9:140114853-140114874:-] 0.5252 140 7 -18.37 -0.3299 MIMAT0002807 hsa-miR-491-5p 727800 RNF208 ggaguaccuucccAAGGGGUGa |||||||| cgcugacccuuccUUCCCCACc 2 10 77 98 [hg19:9:140114781-140114802:-] 0.5991 145 7 -16.12 -0.4041 MIMAT0002874 hsa-miR-503 727800 RNF208 gaCGUCUUGACAAGGGCGACGAu || ||:| |:||||||| ccGCUGAGCCUCGCUCGCUGCUu 2 22 25 47 [hg19:9:140114832-140114854:-] 0.5252 157 7 -24.11 -0.2074 MIMAT0003327 hsa-miR-449b 727800 RNF208 cggucgauuguuauGUGACGGa ||||||| gccugccugcccgcCACUGCCc 2 9 5 26 [hg19:9:140114853-140114874:-] 0.5252 140 7 -19.67 -0.3299 MIMAT0005796 hsa-miR-1271 727800 RNF208 acucacgaacgauccACGGUUc |||||| gccauuaaaacucuuUGCCAAa 2 8 147 168 [hg19:9:140114711-140114732:-] 0.7374 120 6 -7.52 -0.2473

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G060231 RNF208 Homo sapiens 727800

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End RNF208 1 158 100 30.176 - chr9 140114720 140114878 RNF208 159 159 95.056 30.176 - chr9 140114719 140114720 RNF208 160 166 19.333 30.176 - chr9 140114712 140114719 RNF208 167 172 16.603 30.176 - chr9 140114706 140114712 RNF208 173 180 0.033 30.176 - chr9 140114698 140114706

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile RNF208 hsa-miR-92a-2star beg:99 end:118 pic:3' CATTACGTTGTTTAGGGGTGGG 5'& || |||||||| &5' -----GCTTCCGG-CCCCACCC 3' RNF208 hsa-miR-1207-5p beg:54 end:74 pic:3' GGGGAGGGTCGGA--GGGACGGT 5'& |||.||| ||||||| &5' -----CCCGGCCCTGCCCTGCC- 3' RNF208 hsa-miR-3202 beg:75 end:94 pic:3' TAATTTCGAGAA-GAGGGAAGGT 5'& ||| ||.|||||| &5' ------GCTGACCCTTCCTTCC- 3' RNF208 hsa-miR-940 beg:0 end:13 pic:3' CCCCTCGCCCCCG-GGACGGAA 5'& || ||||||| &5' -----------GCGCCTGCCT- 3' RNF208 hsa-miR-24 beg:18 end:35 pic:3' GACAAGGACGACTTGACTCGGT 5'& |||| .||||||| &5' ------CTGCCC-GCTGAGCC- 3' RNF208 hsa-miR-647 beg:131 end:142 pic:3' CTTCCTTCACTCACGTCGGTG 5'& |||||||| &5' ------------TGCAGCCA- 3' RNF208 hsa-miR-1184 beg:120 end:139 pic:3' CCTTCGGTAGTTCAGCGACGTCC 5'& | |||. |||||||||| &5' ----GGCATT--GTCGCTGCAG- 3' RNF208 hsa-miR-1228star beg:0 end:29 pic:3' GTGTG--TGGACGGG----GGCGGGTG 5'& .|.| .||||||| |.||||.| &5' -GCGCCTGCCTGCCCGCCACTGCCCGC 3' RNF208 hsa-miR-1228star beg:58 end:80 pic:3' GTGTGTGGACGGG--GGCGGGTG 5'& .| ||||||| ||||||.| &5' ---GC-CCTGCCCTGCCGCCCGC 3' RNF208 hsa-miR-1231 beg:0 end:22 pic:3' CGTCGACAGGCGGGTCTGTG 5'& ||. ||| |.||||. ||| &5' GCGCCTGCCTGCCCGC-CAC 3' RNF208 hsa-miR-125a-5p beg:46 end:57 pic:3' AGTGTCCAATTTCCCAGAGTCCCT 5'& .||||||| &5' ----------------TTCAGGGA 3' RNF208 hsa-miR-125b beg:46 end:57 pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& .||||||| &5' --------------TTCAGGGA 3' RNF208 hsa-miR-1268 beg:7 end:27 pic:3' GGGGGTGGTGGTG-CGGGC 5'& ||. | ||.|||| ||||| &5' CCTGC-CCGCCACTGCCCG 3' RNF208 hsa-miR-1275 beg:78 end:98 pic:3' CTGTCGGA--GAGGGGGTG 5'& ||| ||| ||.|||||| &5' GAC--CCTTCCTTCCCCAC 3' RNF208 hsa-miR-1296 beg:50 end:67 pic:3' CCTCTACCTCGGTCCCGGGATT 5'& || || ||||||. &5' ------GGGACCC-GGCCCTG- 3' RNF208 hsa-miR-1321 beg:74 end:91 pic:3' TAGTGTAAGTGGAGGGAC 5'& |.| | |||.||| &5' --CGCTGAC-CCTTCCT- 3' RNF208 hsa-miR-146astar beg:38 end:56 pic:3' GACTTCTTGACTTA-AAGTCTCC 5'& .||| |||||.| &5' -------GCTGCTTCTTCAGGG- 3' RNF208 hsa-miR-155 beg:108 end:130 pic:3' TGGGGATAGTGCTAATCGTAATT 5'& .|||| | ||| |.|||||. &5' GCCCCACCC-CGAGTGGCATTG- 3' RNF208 hsa-miR-17star beg:117 end:139 pic:3' GATGTTCACGGA---AGTGACGTCA 5'& |.|||| | ||.|||||| &5' ---CGAGTGGCATTGTCGCTGCAG- 3' RNF208 hsa-miR-182 beg:153 end:169 pic:3' TCACACTCAAGATGGT-AACGGTTT 5'& ||. |||||||| &5' ------------ACTCTTTGCCAAA 3' RNF208 hsa-miR-1914star beg:70 end:90 pic:3' GGAGGGTCACGCCCTGGGGAGG 5'& || ||| || |||||.||| &5' CCGCCC---GCT-GACCCTTCC 3' RNF208 hsa-miR-206 beg:73 end:100 pic:3' GGTG--TGTGAAGGAATGTAAGGT 5'& ||.| || ||||||| | ||| &5' CCGCTGACCCTTCCTTCCCCACCA 3' RNF208 hsa-miR-2861 beg:4 end:27 pic:3' GGCGGGTG-GCGGTC-CGGGG 5'& |.||| | ||||| |||| &5' CTGCCTGCCCGCCACTGCCC- 3' RNF208 hsa-miR-296-3p beg:129 end:147 pic:3' CCTCTCGGAGGTGGGTTGGGAG 5'& ||. || |||||..| &5' -----GCTG-CAGCCAACTTT- 3' RNF208 hsa-miR-3141 beg:82 end:99 pic:3' AGGAGGAGGTGGGCGGGAG 5'& |.||||.| ||| || &5' -CTTCCTTC-CCCACC--- 3' RNF208 hsa-miR-3150 beg:76 end:97 pic:3' GGTTGGAGCTCCTAGAGGGGTC 5'& | ||| | .|||||| &5' CTGACC-CTTCC--TTCCCCA- 3' RNF208 hsa-miR-3151 beg:94 end:117 pic:3' TGG-ACT-AGGGTAACGGGGTGG 5'& ||| ||. |.|| |||||||| &5' ACCATGGCTTCCG--GCCCCACC 3' RNF208 hsa-miR-3195 beg:20 end:39 pic:3' TTGGGC--C-CGGGCCGCGC 5'& .|||| | |||. ||| &5' -GCCCGCTGAGCCT--CGC- 3' RNF208 hsa-miR-34a beg:6 end:26 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& .|| || | ||||||| &5' ---GCCTGCCC-GCCACTGCC- 3' RNF208 hsa-miR-34c-5p beg:6 end:26 pic:3' CGTTAGTCGATTGAT--GTGACGGA 5'& || .| ||||||| &5' -------GCCTGCCCGCCACTGCC- 3' RNF208 hsa-miR-4271 beg:72 end:96 pic:3' GGGGTGGAAAA----GAAGGGGG 5'& |||.|. ||||||| &5' -CCCGCTGACCCTTCCTTCCCC- 3' RNF208 hsa-miR-4273 beg:39 end:57 pic:3' GAC-AGGTAGTCTCTTGTG 5'& ||| |.| ||||.|| &5' CTGCTTCTTCAGGGA---- 3' RNF208 hsa-miR-4283 beg:20 end:37 pic:3' TTTGAGCGACTCGGGGT 5'& .| |||||||||.| &5' --GCCCGCTGAGCCTC- 3' RNF208 hsa-miR-4283 beg:99 end:115 pic:3' TTTGAGCGAC--TCGGGGT 5'& ||| .|||||| &5' ------GCTTCCGGCCCCA 3' RNF208 hsa-miR-4302 beg:23 end:39 pic:3' GAGCGACTCGGTGTGACC 5'& ||||||||| |.|| &5' --CGCTGAGCCTCGCT-- 3' RNF208 hsa-miR-4319 beg:41 end:57 pic:3' CACCGAAACGAGTCCCT 5'& |||| .||||||| &5' ---GCTTC-TTCAGGGA 3' RNF208 hsa-miR-432 beg:69 end:90 pic:3' GGTGGGTTACTGGATGAGGTTCT 5'& ||.|||. ||||| .||| &5' CCGCCCGCTGACCC-TTCC---- 3' RNF208 hsa-miR-449a beg:6 end:26 pic:3' TGGTCGATTGTTATGTGACGGT 5'& .|| || .| ||||||| &5' GCCTGCCCGC----CACTGCC- 3' RNF208 hsa-miR-449b beg:6 end:26 pic:3' CGGTCGATTGTTATGTGACGGA 5'& ||| || .| ||||||| &5' GCCTGCCCGC----CACTGCC- 3' RNF208 hsa-miR-505star beg:86 end:108 pic:3' TGTAGTTATGAAGG------ACCGAGGG 5'& ||||| |||||.|| &5' ---------CTTCCCCACCATGGCTTCC 3' RNF208 hsa-miR-541 beg:80 end:100 pic:3' TCAGGTCTAAGACACGGGTGGT 5'& || ||| ||||||| &5' ---CCC--TTCCTTCCCCACCA 3' RNF208 hsa-miR-571 beg:127 end:146 pic:3' GAGTGA-GTCTACCGGTTGAGT 5'& ||.|| || |||||||. &5' -TCGCTGCA----GCCAACTT- 3' RNF208 hsa-miR-597 beg:115 end:128 pic:3' TGTCACCAGTAGCTCACTGTGT 5'& ||||||.||. &5' -----------CGAGTGGCAT- 3' RNF208 hsa-miR-604 beg:124 end:141 pic:3' CAGGACTTAAGGCGTCGGA 5'& .|| |.|||||| &5' ---TTGTCG-CTGCAGCC- 3' RNF208 hsa-miR-608 beg:98 end:119 pic:3' TGCCTCGACAGGGTTGTGGTGGGGA 5'& .||| .||..| ||||||| &5' ----GGCT--TCCGGCCCCACCCC- 3' RNF208 hsa-miR-648 beg:55 end:76 pic:3' TGGTC---ACGGGACGTGTGAA 5'& ||.| |||||||| |.| &5' -CCGGCCCTGCCCTGC-CGC-- 3' RNF208 hsa-miR-663 beg:50 end:74 pic:3' CGCCAGGGCGCCG---CGGGGCGGA 5'& || || |||| ||||.||| &5' --GGGACC-CGGCCCTGCCCTGCC- 3' RNF208 hsa-miR-668 beg:105 end:127 pic:3' CATCACCCGGCTC--GGCTCACTGT 5'& |||| |||||||.|| &5' ------GGCCCCACCCCGAGTGGCA 3' RNF208 hsa-miR-670 beg:37 end:58 pic:3' GTGGTGTATGTGAGTCCCTG 5'& |.| | | .|||||||| &5' CGCTGCTT-C-TTCAGGGAC 3' RNF208 hsa-miR-671-5p beg:84 end:108 pic:3' GAGGTCGGGGAGGTCCCGAAGGA 5'& ||| |||| ||| ||||||| &5' -TCCTTCCCCACCATGGCTTCC- 3' RNF208 hsa-miR-744 beg:57 end:73 pic:3' ACGACAATCGGGATCGGGGCGT 5'& .||||| ||||.|| &5' -------GGCCCT-GCCCTGC- 3' RNF208 hsa-miR-760 beg:88 end:112 pic:3' AGGGGTGT--CTGGGTCTCGGC 5'& ||||||| |.|.. .||| &5' TCCCCACCATGGCTTCCGGCC- 3' RNF208 hsa-miR-886-3p beg:68 end:80 pic:3' TTCCCAGTCATTC-GTGGGCGC 5'& | |.||||| &5' ------------GCCGCCCGC- 3' RNF208 hsa-miR-886-3p beg:0 end:11 pic:3' TTCCCAGTCATTCGTGGGCGC 5'& |||.||.|| &5' -----------AGCGCCTGC- 3' RNF208 hsa-miR-920 beg:38 end:60 pic:3' ATGACGAAGGTGTCGAGGGG 5'& .|||||||. ||| ||| &5' -GCTGCTTCTTCAGGGACCC 3' RNF208 hsv1-miR-H6-5p beg:0 end:23 pic:3' ATGTGGGGGGACGGAAGGTGG 5'& .|.||. |||||| ||||. &5' -GCGCCTGCCTGCCCGCCACT 3' RNF208 kshv-miR-K12-12star beg:78 end:97 pic:3' AGTTGGTCCCGTGGGAGGGGGT 5'& .||| .|||.||||| &5' --GACCCT----TCCTTCCCCA 3' RNF208 kshv-miR-K12-8 beg:0 end:10 pic:3' ACGAGAGAGTCAGCGCGGATC 5'& ||||||. &5' -------------GCGCCTG- 3'

DNA & RNA Element - SomamiR Gene Name Mutation Mutation ID miR ID Chromosome Location Ref Alt mirsite mirseed Seed Class Sample Name Cancer Type RNF208 chr9:g.137220707A>G COSM3088948 hsa-miR-106b-3p chr9 137220707 A G tgtgagCAGTGCctg CCGCACUG m6c CCK81 [large_intestine][NS][carcinoma][adenocarcinoma] RNF208 chr9:g.137220707A>G COSM3088948 hsa-miR-1273g-3p chr9 137220707 A G tgtgaGCAGTGcctg ACCACUGC m6c CCK81 [large_intestine][NS][carcinoma][adenocarcinoma] RNF208 chr9:g.137220707A>G COSM3088948 hsa-miR-4418 chr9 137220707 A G tgtgaGCAGTGcctg CACUGCAG m6a CCK81 [large_intestine][NS][carcinoma][adenocarcinoma] RNF208 chr9:g.137220707A>G COSM3088948 hsa-miR-572 chr9 137220707 A G tgtGAGCGGtgcctg GUCCGCUC m6c CCK81 [large_intestine][NS][carcinoma][adenocarcinoma] RNF208 chr9:g.137220707A>G COSM3088948 hsa-miR-574-3p chr9 137220707 A G tgTGAGCGgtgcctg CACGCUCA m6c CCK81 [large_intestine][NS][carcinoma][adenocarcinoma] RNF208 chr9:g.137220707A>G COSM3088948 hsa-miR-593-5p chr9 137220707 A G tgtgagcGGTGCCTg AGGCACCA m7a CCK81 [large_intestine][NS][carcinoma][adenocarcinoma] RNF208 chr9:g.137220707A>G COSM3088948 hsa-miR-6743-3p chr9 137220707 A G tgtGAGCGGtgcctg AGCCGCUC m6c CCK81 [large_intestine][NS][carcinoma][adenocarcinoma] RNF208 chr9:g.137220707A>G COSM3088948 hsa-miR-6807-3p chr9 137220707 A G tgtgaGCAGTGcctg CACUGCAU m6a CCK81 [large_intestine][NS][carcinoma][adenocarcinoma] RNF208 chr9:g.137220707A>G COSM3088948 hsa-miR-6812-3p chr9 137220707 A G tgtGAGCGGtgcctg CCGCUCUU m6a CCK81 [large_intestine][NS][carcinoma][adenocarcinoma] RNF208 chr9:g.137220707A>G COSM3088948 hsa-miR-6828-3p chr9 137220707 A G tgtGAGCAGtgcctg AUCUGCUC m6c CCK81 [large_intestine][NS][carcinoma][adenocarcinoma] RNF208 chr9:g.137220707A>G COSM3088948 hsa-miR-6890-3p chr9 137220707 A G tgtgaGCAGTGcctg CCACUGCC m6b CCK81 [large_intestine][NS][carcinoma][adenocarcinoma] RNF208 chr9:g.137220707A>G COSM3088948 hsa-miR-767-3p chr9 137220707 A G tgTGAGCAGtgcctg UCUGCUCA m7b CCK81 [large_intestine][NS][carcinoma][adenocarcinoma] RNF208 chr9:g.137220707A>G COSM3088948 hsa-miR-93-3p chr9 137220707 A G tgtgAGCAGTgcctg ACUGCUGA m6a CCK81 [large_intestine][NS][carcinoma][adenocarcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-let-7a-2-3p chr9 137220723 C T ctgcCTGTACtctgt CUGUACAG m6c TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-let-7g-3p chr9 137220723 C T ctgcCTGTACtctgt CUGUACAG m6c TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-1205 chr9 137220723 C T ctgCCTGCActctgt UCUGCAGG m6c TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-1286 chr9 137220723 C T ctgCCTGCActctgt UGCAGGAC m6a TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-130a-3p chr9 137220723 C T ctgccTGCACTctgt CAGUGCAA m6b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-130b-3p chr9 137220723 C T ctgccTGCACTctgt CAGUGCAA m6b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-143-5p chr9 137220723 C T ctgcCTGCACtctgt GGUGCAGU m6b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-148a-3p chr9 137220723 C T ctgccTGCACTctgt UCAGUGCA m6c TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-148b-3p chr9 137220723 C T ctgccTGCACTctgt UCAGUGCA m6c TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-152-3p chr9 137220723 C T ctgccTGCACTctgt UCAGUGCA m6c TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-1909-5p chr9 137220723 C T ctgcctGCACTCtgt UGAGUGCC m6b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-1911-5p chr9 137220723 C T ctgcctGTACTCtgt UGAGUACC m6b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-301a-3p chr9 137220723 C T ctgccTGCACTctgt CAGUGCAA m6b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-301b-3p chr9 137220723 C T ctgccTGCACTctgt CAGUGCAA m6b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-3666 chr9 137220723 C T ctgccTGCACTctgt CAGUGCAA m6b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-3937 chr9 137220723 C T ctGCCTGTactctgt ACAGGCGG m6a TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-3944-5p chr9 137220723 C T ctgcCTGCACtctgt UGUGCAGC m6b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-4295 chr9 137220723 C T ctgccTGCACTctgt CAGUGCAA m6b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-4438 chr9 137220723 C T ctGCCTGTactctgt CACAGGCU m6b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-4514 chr9 137220723 C T CTGCCTGTactctgt ACAGGCAG m8a TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-454-3p chr9 137220723 C T ctgccTGCACTctgt UAGUGCAA m6b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-4671-3p chr9 137220723 C T ctgccTGCACTctgt UUAGUGCA m6c TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-4693-3p chr9 137220723 C T ctgcctgCACTCTgt UGAGAGUG m6c TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-504-3p chr9 137220723 C T ctgcctGCACTCtgt GGGAGUGC m6c TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-5095 chr9 137220723 C T ctGCCTGTActctgt UUACAGGC m7b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-515-3p chr9 137220723 C T ctgcctGCACTCtgt GAGUGCCU m6a TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-519a-3p chr9 137220723 C T ctgccTGCACTctgt AAAGUGCA m6c TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-519b-3p chr9 137220723 C T ctgccTGCACTctgt AAAGUGCA m6c TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-519c-3p chr9 137220723 C T ctgccTGCACTctgt AAAGUGCA m6c TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-5586-3p chr9 137220723 C T ctgcctgCACTCTGt CAGAGUGA m7a TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-6511b-5p chr9 137220723 C T ctGCCTGCActctgt CUGCAGGC m7b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-6715b-5p chr9 137220723 C T cTGCCTGTactctgt ACAGGCAC m7a TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-6722-3p chr9 137220723 C T ctgCCTGCActctgt UGCAGGGG m6a TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-6811-5p chr9 137220723 C T ctGCCTGCActctgt AUGCAGGC m7b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-7151-3p chr9 137220723 C T ctGCCTGTActctgt CUACAGGC m7b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] RNF208 chr9:g.137220723C>T COSM1107078 hsa-miR-759 chr9 137220723 C T ctgcctgCACTCTGt GCAGAGUG m7b TCGA-D1-A15X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region RNF208 High_conserved miR-503 chr9:140114832 7-mer-m8 11 3pUTR RNF208 High_conserved miR-503 chr9:140114958 7-mer-A1 64 CDS RNF208 High_conserved miR-96/507/1271 chr9:140114711 7-mer-A1 42 3pUTR RNF208 High_conserved miR-143/1721/4770 chr9:140115110 7-mer-m8 64 CDS RNF208 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr9:140114958 7-mer-A1 64 CDS RNF208 High_conserved miR-182 chr9:140114711 8-mer 42 3pUTR RNF208 High_conserved miR-204/204b/211 chr9:140115361 7-mer-A1 11 CDS RNF208 High_conserved miR-214/761/3619-5p chr9:140116024 8-mer 24 5pUTR RNF208 High_conserved miR-22/22-3p chr9:140114961 7-mer-m8 51 CDS RNF208 High_conserved miR-24/24ab/24-3p chr9:140114844 7-mer-m8 13 3pUTR RNF208 High_conserved miR-24/24ab/24-3p chr9:140114972 7-mer-m8 4 CDS RNF208 High_conserved miR-24/24ab/24-3p chr9:140115027 7-mer-m8 36 CDS RNF208 High_conserved miR-101/101ab chr9:140114935 7-mer-m8 33 CDS RNF208 High_conserved miR-103a/107/107ab chr9:140115737 7-mer-m8 29 5pUTR RNF208 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr9:140114853 7-mer-m8 18 3pUTR RNF208 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr9:140115380 8-mer 9 CDS RNF208 High_conserved miR-125a-5p/125b-5p/351/670/4319 chr9:140114823 7-mer-A1 33 3pUTR RNF208 Medium_conserved miR-542-3p chr9:140115729 7-mer-m8 2 5pUTR RNF208 Medium_conserved miR-615-3p chr9:140115354 7-mer-A1 11 CDS RNF208 Medium_conserved miR-149 chr9:140115969 7-mer-A1 16 5pUTR RNF208 Medium_conserved miR-326/330/330-5p chr9:140115325 7-mer-m8 9 CDS RNF208 Medium_conserved miR-326/330/330-5p chr9:140115967 7-mer-A1 16 5pUTR RNF208 Medium_conserved miR-342-3p chr9:140115160 7-mer-m8 49 CDS RNF208 Medium_conserved miR-377 chr9:140115161 7-mer-m8 49 CDS RNF208 Medium_conserved miR-125a-3p/1554 chr9:140115726 7-mer-m8 9 5pUTR RNF208 Medium_conserved miR-485-5p/1698/1703/1962 chr9:140115978 8-mer 16 5pUTR RNF208 Medium_conserved miR-491-5p chr9:140114781 7-mer-m8 13 3pUTR RNF208 Medium_conserved miR-491-5p chr9:140115712 7-mer-A1 11 5pUTR

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score RNF208 RAID00400307 hsa-miR-6781-5p miRNA MIMAT0027462 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID00544454 hsa-miR-647 miRNA MIMAT0003317 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID00608148 hsa-miR-503-5p miRNA MIMAT0002874 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID00723001 hsa-miR-96-5p miRNA MIMAT0000095 RNF208 mRNA 727800 CLIP-seq//Prediction 0.6559 RNF208 RAID00943567 hsa-miR-449b-5p miRNA MIMAT0003327 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID01070290 hsa-miR-34a-5p miRNA MIMAT0000255 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID01131183 hsa-miR-24-3p miRNA MIMAT0000080 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID01161994 hsa-miR-491-5p miRNA MIMAT0002807 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID01220184 hsa-miR-449a miRNA MIMAT0001541 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID01445305 hsa-miR-1271-5p miRNA MIMAT0005796 RNF208 mRNA 727800 CLIP-seq//Prediction 0.6308 RNF208 RAID01821868 hsa-miR-4715-5p miRNA MIMAT0019824 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID01838732 hsa-miR-19a-3p miRNA MIMAT0000073 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID01908976 hsa-miR-9-5p miRNA MIMAT0000441 RNF208 mRNA 727800 CLIP-seq//Prediction 0.6308 RNF208 RAID02330216 hsa-miR-764 miRNA MIMAT0010367 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID02351706 hsa-miR-34c-5p miRNA MIMAT0000686 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID02767035 hsa-miR-92a-2-5p miRNA MIMAT0004508 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID02975893 hsa-miR-5197-5p miRNA MIMAT0021130 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID03608825 hsa-miR-19b-3p miRNA MIMAT0000074 RNF208 mRNA 727800 Prediction 0.1828 RNF208 RAID03869960 hsa-miR-182-5p miRNA MIMAT0000259 RNF208 mRNA 727800 CLIP-seq//Prediction 0.6592