RNF5
DNA & RNA Element - UTRdb
Gene NameTypeASPicDBUTRaspicRefseq IDGenome
RNF53'UTR7c611c3831BA091780NM_006913chr6:32256082-32256547:+
RNF53'UTRb4e14464d0BA091781NM_006913chr6:32259148-32259907:+
RNF53'UTRcd15e67963BA091782NM_006913chr6:32256082-32256548:+
RNF55'UTR7c611c3831CA144142NM_006913chr6:32254140-32254266:+
RNF55'UTRb4e14464d0CA144143NM_006913chr6:32254109-32254266:+
RNF55'UTRcd15e67963CA144144NM_006913chr6:32254299-32254352:+
DNA & RNA Element - RepTar
Gene NamemiRNABeginEndProfile
RNF5hsa-miR-3142beg:126end:143pic:3' AGACTTCCAAGTCTTTCCGGAA 5'& || |||.||||||| &5' -------GTCCAGGAAGGCCT- 3'
RNF5hsa-miR-3176beg:100end:118pic:3' GGCCATCAGGGTCCGGTCA 5'& |.| |.| |. ||||||| &5' CTGTTGG-CTAAGGCCAG- 3'
RNF5hsa-miR-3123beg:205end:224pic:3' CTAATTTGTTAAGAGAC 5'& .||. .||||||||| &5' -GTTGTTTAATTCTCTG 3'
RNF5hsa-miR-1915beg:219end:232pic:3' GGGCGGCGCAGCGGGACCCC 5'& .||||||||| &5' ----------TGCCCTGGGG 3'
RNF5hsa-miR-3196beg:406end:422pic:3' CTCCGGGGACGGCGGGGC 5'& |. |.| ||||||| &5' ---GTGCTT-CCGCCCC- 3'
RNF5hsa-let-7abeg:414end:433pic:3' TTGATATGTTGGA-TGATGGAGT 5'& .| ||| |||||||| &5' ------GCCCCCTCACTACCTC- 3'
RNF5hsa-let-7dbeg:414end:433pic:3' TTGATACGTTGGA-TGATGGAGA 5'& || ||| |||||||| &5' ------GCCCCCTCACTACCTC- 3'
RNF5hsa-let-7fbeg:419end:433pic:3' TTGATATGTTAGA-TGATGGAGT 5'& || |||||||| &5' -----------CTCACTACCTC- 3'
RNF5hsa-miR-98beg:419end:433pic:3' TTGTTATGTTGAATGATGGAGT 5'& || |||||||| &5' ----------CTCACTACCTC- 3'
RNF5hsa-miR-665beg:62end:80pic:3' TCCCCGGAGTCG-GAGGACCA 5'& |.|| |. ||||||| &5' -----CTTCCGTACTCCTGG- 3'
RNF5hsa-miR-4291beg:49end:63pic:3' TCGACAAGGACGACTT 5'& || |||||||| &5' ----GTCCCTGCTGA- 3'
RNF5hsa-miR-2355beg:214end:233pic:3' AACAGGTAACATAGACCCCTA 5'& |.| || ||||||| &5' ---TTCTCTGCC-CTGGGGA- 3'
RNF5ebv-miR-BART20-5pbeg:0end:13pic:3' CCTTACTTCTGTACGGACGAT 5'& .|||.||||| &5' ----------TATGTCTGCT- 3'
RNF5hiv1-miR-TAR-3pbeg:15end:36pic:3' ACCCAAGGGATCAA-TCGGTCTCT 5'& ||| ||||||||| &5' ------CCCACCTCCAGCCAGAGA 3'
RNF5hsa-let-7bbeg:412end:433pic:3' TTGGTGTGTTGGA-TGATGGAGT 5'& ||.| | ||| |||||||| &5' --CCGC-CC-CCTCACTACCTC- 3'
RNF5hsa-let-7cbeg:412end:433pic:3' TTGGTATGTTGGA-TGATGGAGT 5'& ||. | ||| |||||||| &5' --CCGCCC--CCTCACTACCTC- 3'
RNF5hsa-let-7gbeg:414end:433pic:3' TTGACATGTTTGA-TGATGGAGT 5'& .| || |||||||| &5' ------GCCCCCTCACTACCTC- 3'
RNF5hsa-let-7gstarbeg:146end:168pic:3' CGTTCCGTCAC--CGGACATGTC 5'& .||| |||| |.||||.|| &5' --GAGG-AGTGAAGTCTGTGCA- 3'
RNF5hsa-let-7ibeg:413end:433pic:3' TTGTCGTGTTTGA-TGATGGAGT 5'& |.| || |||||||| &5' -----CGCCCCCTCACTACCTC- 3'
RNF5hsa-miR-1178beg:307end:319pic:3' GATCCCTTCTTGTCACTCGTT 5'& .|||.|||| &5' ------------GGTGGGCAA 3'
RNF5hsa-miR-1179beg:22end:42pic:3' GGTTGGTTACTTTCTTACGAA 5'& |||.|||. .|||||| | &5' CCAGCCAGA-GAAGAAT-C-- 3'
RNF5hsa-miR-1207-5pbeg:10end:32pic:3' GGGGA-GGGTCGGAGGGACGGT 5'& .||| |||| ||||| |||| &5' -TCCTGCCCA-CCTCCA-GCCA 3'
RNF5hsa-miR-1228starbeg:0end:23pic:3' GTGTGTGGACG-GGGGCGGGTG 5'& .| .|||| .||.|||||| &5' --TATGTCTGCTTCCTGCCCAC 3'
RNF5hsa-miR-1233beg:138end:156pic:3' GACGCCCTCCTGTCC-CGAGT 5'& ||| ||||||| || |. &5' CTG-GGGAGGA--GGAGT--- 3'
RNF5hsa-miR-1236beg:131end:153pic:3' GACCTCTCTGTTCCCCTTCTCC 5'& ||| ||.| |||||.|||| &5' --GGA-AGGCCTGGGGAGGAGG 3'
RNF5hsa-miR-1237beg:138end:160pic:3' GACCCC-CTGCCTCGTCTTCCT 5'& |||||| | ||||. |||| &5' CTGGGGAGGAGGAGT-GAAG-- 3'
RNF5hsa-miR-1266beg:208end:232pic:3' TCGGGACAAGATGTCGGGACTCC 5'& |... |||| | ||||||.|| &5' -GTTTAATTCT-CTGCCCTGGGG 3'
RNF5hsa-miR-1274abeg:131end:153pic:3' ACCG--CGGACTTGTCC-CTG 5'& || |||||.. ||| |. &5' -GGAAGGCCTGGGGAGGAGG- 3'
RNF5hsa-miR-1275beg:328end:343pic:3' CTGTCGGAG-AGGGGGTG 5'& ||| |||||||| &5' ------CTCTTCCCCCAC 3'
RNF5hsa-miR-1281beg:140end:158pic:3' CCCTCTCCTCCTCCGCT 5'& ||.|||||||| |.|| &5' -GGGGAGGAGGA-GTGA 3'
RNF5hsa-miR-1308beg:70end:89pic:3' GGTGACTTGGTGGGTACG 5'& | |||.||| ||| || &5' CTCCTGGACC-CCCTTG- 3'
RNF5hsa-miR-130bstarbeg:219end:238pic:3' CATCACGTTGTCCCTTTCTCA 5'& ||| ..|||||.||| &5' ----TGCCCTGGGGAAGGAG- 3'
RNF5hsa-miR-1321beg:420end:436pic:3' TAGTGTAAGTGGAGGGAC 5'& |||| .||||||.| &5' -TCAC---TACCTCCTT- 3'
RNF5hsa-miR-153beg:151end:168pic:3' CTAGTGAAAACACT---GATACGTT 5'& |||| ||.|||| &5' ----------GTGAAGTCTGTGCA- 3'
RNF5hsa-miR-1825beg:225end:244pic:3' CCTC-TCCTCCCGTGACCT 5'& ||.| |||||| |||| &5' GGGGAAGGAGGA---TGGA 3'
RNF5hsa-miR-185starbeg:98end:122pic:3' CTGGTCTCC--TTTCGGTCGGGGA 5'& |.. || ||.||||||||. &5' --CTGTTGGCTAAGGCCAGCCCT- 3'
RNF5hsa-miR-186beg:220end:247pic:3' TCGGG---TTTTCCTCTTAAGAAAC 5'& |||| ..||||||.|| ||| &5' -GCCCTGGGGAAGGAGGATGGATTG 3'
RNF5hsa-miR-1915starbeg:135end:161pic:3' CCGGGCCCGTCGTTC-CGTTCCA 5'& ||||.||| || |.| | | || &5' GGCCTGGGGAGGAGGAGTGAAGT 3'
RNF5hsa-miR-195starbeg:29end:49pic:3' CCTCGTCGTGTCGGTTATAACC 5'& ||| | | ||.||||| &5' -GAGA---AGAATCAGTATTG- 3'
RNF5hsa-miR-198beg:247end:269pic:3' CTTGGATAGAGGGGAGACCTGG 5'& |||. | |.||.||||| || &5' GAATGTCTTTCTCCTCT---CC 3'
RNF5hsa-miR-200bbeg:26end:48pic:3' AGTAGTAATGGTC-C------GTCATAAT 5'& .|||| | |||||||. &5' --------GCCAGAGAAGAATCAGTATTG 3'
RNF5hsa-miR-2110beg:335end:349pic:3' GTGAGTCGCCGGCAAAGGGGTT 5'& || |||||| &5' ----------CCCACTCCCCA- 3'
RNF5hsa-miR-2114starbeg:177end:198pic:3' TTCAGGGA-ACGAA-CTCCGAGC 5'& ||.| |||| ||||||| &5' ----CCTTCTGCTCAGAGGCTC- 3'
RNF5hsa-miR-214beg:42end:62pic:3' TGACGGACAGACACGGACGACA 5'& |.|| ||| ||||||| &5' ATTGAGGGTC----CCTGCTG- 3'
RNF5hsa-miR-22starbeg:25end:40pic:3' ATTTCGAACGGTGACTTCTTGA 5'& |||| ||||||. &5' --------GCCAGAGAAGAAT- 3'
RNF5hsa-miR-2355beg:127end:148pic:3' AACAGGTAACATA-GACCCCTA 5'& |||||| ||||||| &5' -TGTCCAGGAAGGCCTGGGGA- 3'
RNF5hsa-miR-2861beg:12end:31pic:3' GGCGGGTGGCGGTCCGGGG 5'& |.||||||| ||| ||| &5' CTGCCCACCTCCA-GCC-- 3'
RNF5hsa-miR-296-3pbeg:171end:198pic:3' CCTCTCGG-AGGTGGGTTGG-GAG 5'& |||||||| || |.||. ||| &5' GGAGAGCCTTCTGCTCAGAGGCTC 3'
RNF5hsa-miR-296-5pbeg:38end:58pic:3' TGTCCTAACTCCCCCCCGGGA 5'& ||| |||||||| |||| &5' -CAGTATTGAGGGT---CCCT 3'
RNF5hsa-miR-3121beg:81end:101pic:3' ACAGGAAACGGATGAGATAAAT 5'& |||| || |||||||| &5' ---CCTTGACCC-CTCTATTT- 3'
RNF5hsa-miR-3127beg:209end:230pic:3' GAAGGGTAAGGTGTTCGGGACTA 5'& |. ||||. ||||||. &5' --TTTAATTCTCT--GCCCTGG- 3'
RNF5hsa-miR-3132beg:2end:22pic:3' AGGAGACTCGAGGAAGAGATGGGT 5'& || || |||| ||.|||| &5' -----TGT-CTGCTTC-CTGCCCA 3'
RNF5hsa-miR-3132beg:204end:227pic:3' AGGAGACTCGAGG-AAGAGATGGGT 5'& | |.|. ||||||.||| &5' ----CGTTGTTTAATTCTCTGCCC- 3'
RNF5hsa-miR-3138beg:338end:362pic:3' TGAGGGAGATGGAGTGAC-AGGTGT 5'& |||||| | |.||.|||| |..| &5' ACTCCC-C-ATCTTACTGATTTA-- 3'
RNF5hsa-miR-3138beg:7end:28pic:3' TGAGGGAGATGGAGTGACAGGTGT 5'& .||.||| .|| ||| |||| &5' GCTTCCT--GCC-CACC-TCCA-- 3'
RNF5hsa-miR-3141beg:4end:26pic:3' AGGAGGAGG-TGGGCGGGAG 5'& ||. |.||| .||| |||| &5' TCTGCTTCCTGCCCA-CCTC 3'
RNF5hsa-miR-3141beg:329end:348pic:3' AGGAGGAGGTGGGCGGGAG 5'& ||.||| ||||.| ||| &5' TCTTCCCCCACTC-CCC-- 3'
RNF5hsa-miR-3144-5pbeg:40end:58pic:3' GATATATAGAGAAACCAGGGGA 5'& .|||. ||||||. &5' ----GTATTGAG--GGTCCCT- 3'
RNF5hsa-miR-3153beg:264end:287pic:3' TTTACAGGGAT----GAGCGAAAGGGG 5'& .|||| .|.||||||||. &5' ------TCCTAAGTCTTTGCTTTCCCT 3'
RNF5hsa-miR-3156beg:277end:300pic:3' ACAGAGGG--TGAAGGTCTAGAAA 5'& |.|||| |.|||. |||.| &5' --TTTCCCTGATTTCTTGATTT-- 3'
RNF5hsa-miR-3162beg:257end:288pic:3' GAGGGGTGGGA--AGAT----GAGGGATT 5'& ||||.| ||. ||| .|||||.| &5' CTCCTCTCCTAAGTCTTTGCTTTCCCTGA 3'
RNF5hsa-miR-3174beg:180end:201pic:3' CCGAGACGTAGAGATTGAGTGAT 5'& .||||| || ..|||||| &5' --TTCTGC-TCAGAGGCTCACT- 3'
RNF5hsa-miR-3174beg:407end:429pic:3' CCGAGACGTAGAGATT--GAGTGAT 5'& ||| || | ||||||| &5' -----TGCTTC-CGCCCCCTCACTA 3'
RNF5hsa-miR-3177beg:151end:168pic:3' TGCACAGGGGTCACGGCACGT 5'& ||| ||| |.||||| &5' --GTGA----AGT-CTGTGCA 3'
RNF5hsa-miR-3180-3pbeg:399end:422pic:3' CCGGAGGCCTT-CG-AGGCGGGGT 5'& |||. || |||||||| &5' ---CTCTTAAGTGCTTCCGCCCC- 3'
RNF5hsa-miR-3184beg:408end:426pic:3' TTTTCGAGCCAGACTCCGGGGAGT 5'& |||. | ||||||| &5' ----GCTTCCGC-----CCCCTCA 3'
RNF5hsa-miR-3196beg:47end:67pic:3' CTCCGGGGACGGC-GGGGC 5'& .||.||||||.| |||. &5' -GGGTCCCTGCTGACCCT- 3'
RNF5hsa-miR-3198beg:366end:389pic:3' AGAGGTAAGGGGTCCTGAGGTG 5'& |.|.|| |||||| || ||.| &5' TTTTCACTCCCCA-GAGTCTA- 3'
RNF5hsa-miR-378beg:393end:413pic:3' GGAAGACTGAG-GTTCAGGTCA 5'& ||||||||| .|||| | &5' --TTCTGACTCTTAAGTGC--- 3'
RNF5hsa-miR-411beg:0end:13pic:3' GCATGCGATATGCCAGATGAT 5'& ||||| ||||.|| &5' -----GCTAT---GTCTGCT- 3'
RNF5hsa-miR-421beg:85end:108pic:3' CGC-GGGTTAATTACAGACAACTA 5'& | ||| || |||||||. &5' --GACCCCTCT-ATTTCTGTTGG- 3'
RNF5hsa-miR-423-5pbeg:407end:426pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& .||| | ||||||| &5' -------TGCTTCCGCCCCCTCA 3'
RNF5hsa-miR-4253beg:70end:87pic:3' TGGGGGACCTGTACGGGA 5'& |.||||||| |||| &5' --CTCCTGGACC--CCCT 3'
RNF5hsa-miR-4253beg:110end:133pic:3' TGG--GGGACCTGT-ACGGGA 5'& .|| ||||||||| ||.|| &5' GCCAGCCCTGGACATTGTCC- 3'
RNF5hsa-miR-4256beg:298end:316pic:3' TGGAAGTAGTCCAGTCTA 5'& |.||||| |||| .| &5' ATCTTCAA-AGGTGGG-- 3'
RNF5hsa-miR-4259beg:71end:97pic:3' AGGACT--GGGGATCTGGGTTGAC 5'& |||||. ||||| ||||| || &5' TCCTGGACCCCCTTGACCCCTCT- 3'
RNF5hsa-miR-4266beg:0end:18pic:3' CCGGTTC---CGGAGGATC 5'& ||.| ||.||||. &5' -GCTATGTCTGCTTCCTG- 3'
RNF5hsa-miR-4268beg:137end:156pic:3' GTGTAGGA-CTCTCCTCCTCGG 5'& ||| |.|||||||||. &5' -----CCTGGGGAGGAGGAGT- 3'
RNF5hsa-miR-4271beg:320end:341pic:3' GGGGTGGAAAAGAAGGGGG 5'& ||| |. ||||||||| &5' -CCCTCTGACTCTTCCCCC 3'
RNF5hsa-miR-4274beg:140end:157pic:3' GTCCC-CCTCCCTGACGAC 5'& .||| ||| ||| || &5' -GGGGAGGA-GGAGTG--- 3'
RNF5hsa-miR-4279beg:134end:153pic:3' CTTCGG--CCCTCCTCTC 5'& |.||| ||||||||. &5' -AGGCCTGGGGAGGAGG- 3'
RNF5hsa-miR-4280beg:179end:202pic:3' CGAGACGAGTCT-TGATGTGAG 5'& .|||||||||| .|| ||||| &5' -TTCTGCTCAGAGGCT-CACTC 3'
RNF5hsa-miR-4290beg:225end:243pic:3' CTCCCTTCTTTCCTCCCGT 5'& .|||||| .|||| || &5' -GGGGAAG-GAGGATGG-- 3'
RNF5hsa-miR-429beg:26end:48pic:3' TGCCAAAATGGTCT-------GTCATAAT 5'& .||||| |||||||. &5' --------GCCAGAGAAGAATCAGTATTG 3'
RNF5hsa-miR-4294beg:51end:70pic:3' GGGACGACATCTGAGGG 5'& |||||||| | ||.|| &5' CCCTGCTG-ACCCTTCC 3'
RNF5hsa-miR-4300beg:306end:326pic:3' CTTCATCAGG-TCGAGGGT 5'& |.||.| ||.|||| &5' -AGGTGGGCAAAGTTCCC- 3'
RNF5hsa-miR-4304beg:114end:132pic:3' ACGGGACCTGT-ACGGCC 5'& |||||||||| ||.| &5' -GCCCTGGACATTGTC-- 3'
RNF5hsa-miR-4304beg:125end:145pic:3' ACGGGACCTGTACGG-CC 5'& ||.|| ||| ||| || &5' TGTCCAGGAAG-GCCTGG 3'
RNF5hsa-miR-4304beg:220end:239pic:3' ACGGGACCTGTACGGCC 5'& |||||||. | | || &5' -GCCCTGGGGAAGGAGG 3'
RNF5hsa-miR-4312beg:140end:162pic:3' ACCCCTGT-CCTTGTTCCGG 5'& ||||| . |||. | |.| &5' -GGGGAGGAGGAGTGAAGTC 3'
RNF5hsa-miR-4312beg:225end:243pic:3' ACCCCTGTCCTTGTTCCGG 5'& ||||| ||||. | || &5' -GGGGA-AGGAGGATGG-- 3'
RNF5hsa-miR-483-3pbeg:133end:158pic:3' TTCTGC-CCTCCTCTCCTCACT 5'& |||.| ||.| ||||||||| &5' AAGGCCTGGGGAGGAGGAGTGA 3'
RNF5hsa-miR-486-3pbeg:206end:229pic:3' TAGGACATGACTC--GACGGGGC 5'& .||| ||||||.| &5' ---TTGTTTAATTCTCTGCCCTG 3'
RNF5hsa-miR-516a-3pbeg:220end:239pic:3' TGGGAGACTTTCCTTCGT 5'& .|||| |.|||||.| &5' GCCCTGGGGAAGGAGG-- 3'
RNF5hsa-miR-516bstarbeg:220end:239pic:3' TGGGAGACTTTCCTTCGT 5'& .|||| |.|||||.| &5' GCCCTGGGGAAGGAGG-- 3'
RNF5hsa-miR-518cstarbeg:13end:36pic:3' GTCTTTCACGA----AGGGAGGTCTCT 5'& ||| ||| ||||||| &5' -------TGCCCACCTCCAGCCAGAGA 3'
RNF5hsa-miR-541beg:3end:24pic:3' TCAGGTCTAAGACACGGGTGGT 5'& |||. | ||| |||||||| &5' -GTCT-GCTTCC-TGCCCACC- 3'
RNF5hsa-miR-548sbeg:98end:111pic:3' TTTTATTGACGTCAAAACCGGTA 5'& |||. ||||.| &5' -------CTGT-----TGGCTA- 3'
RNF5hsa-miR-551bstarbeg:269end:300pic:3' CCAGAGT-----GGGTGC---GAACTAAAG 5'& ||||. ||| |||||||| &5' -GTCTTTGCTTTCCCTGATTTCTTGATTT- 3'
RNF5hsa-miR-571beg:180end:203pic:3' GAG-TGAGTCTACCGGTTGAGT 5'& || .|||||| |||. ||||| &5' -TCTGCTCAGA-GGCTCACTCA 3'
RNF5hsa-miR-586beg:148end:170pic:3' CCTGGATTTTTATGTTACGTAT 5'& ||| . .||.| | .|||||| &5' GGAGT--GAAGT-CTGTGCATA 3'
RNF5hsa-miR-601beg:61end:83pic:3' GAGGAGGTTGTTAGGATCTGGT 5'& |||.| .| ||||.|||| &5' --CCTTCCGTACTCCTGGACC- 3'
RNF5hsa-miR-615-5pbeg:64end:86pic:3' CTAGGCTCGTGGCCCCTGGGGG 5'& |||| | || |||||||| &5' --TCCGTACTCCT-GGACCCCC 3'
RNF5hsa-miR-625beg:326end:341pic:3' CCTGATATCTTGA-AAGGGGGA 5'& .||| ||||||| &5' ---------GACTCTTCCCCC- 3'
RNF5hsa-miR-627beg:178end:200pic:3' AGGAGAAAAGAATCTCTGAGTG 5'& |.||| || ||||.||||| &5' -CTTCTG--CTCAGAGGCTCAC 3'
RNF5hsa-miR-637beg:7end:29pic:3' TGCGTCT--CGGGCTTTCGGGGGTCA 5'& || |||| ||.|||| &5' --GCTTCCTGCCCA----CCTCCAG- 3'
RNF5hsa-miR-647beg:23end:32pic:3' CTTCCTTCACTCACGTCGGTG 5'& |||||| &5' --------------CAGCCA- 3'
RNF5hsa-miR-654-5pbeg:4end:24pic:3' CGTGTACAAGACGC----CGGGTGGT 5'& || ||||| ||||||| &5' -----TG-TCTGCTTCCTGCCCACC- 3'
RNF5hsa-miR-654-5pbeg:179end:201pic:3' CGTGTACAAGACG-----CCGGGTGGT 5'& |||||| |||.|||. &5' -------TTCTGCTCAGAGGCTCACT- 3'
RNF5hsa-miR-711beg:271end:294pic:3' GAATGCAGAGAGGGACCCAGGG 5'& ||| .| ||.|||||| |.|. &5' CTT-TG-CTTTCCCTGATTTCT 3'
RNF5hsa-miR-711beg:0end:21pic:3' GAATGCAGA-GAGGGACCCAGGG 5'& ||.|||| ||.|||| ||| &5' --TATGTCTGCTTCCTG---CCC 3'
RNF5hsa-miR-720beg:132end:150pic:3' ACC-TCCGGGGTCGCTCT 5'& || |||||. .| |||. &5' -GGAAGGCCTGGG-GAGG 3'
RNF5hsa-miR-760beg:366end:387pic:3' AGGGGTGTCTGGGTCTCGGC 5'& |. ||| |||||||.| &5' TTTTCACTC-CCCAGAGTC- 3'
RNF5hsa-miR-761beg:37end:62pic:3' ACACAGTCAAAGT-----GGGACGACG 5'& ||||| |. |||||||| &5' ----TCAGTATTGAGGGTCCCTGCTG- 3'
RNF5hsa-miR-764beg:141end:167pic:3' TCCTCCTGTTCAC-TCGTGGACG 5'& .|||||| .|||| ||. . ||| &5' GGGAGGAGGAGTGAAGTCTGTGC 3'
RNF5hsa-miR-765beg:252end:267pic:3' GTAGTGGAAGGAAGAGGAGGT 5'& ||.||||||||. &5' --------TCTTTCTCCTCT- 3'
RNF5hsa-miR-886-5pbeg:312end:334pic:3' GGCGAACTCGATTGAGGCTGGGC 5'& || ||.| |||.|||.| &5' --GCAA-AGTTCCCTCTGACTC- 3'
RNF5hsa-miR-920beg:405end:423pic:3' ATGACGAAGGTGTCGAGGGG 5'& | |||||||.| |||| &5' -AGTGCTTCCGC----CCCC 3'
RNF5hsa-miR-921beg:407end:429pic:3' CTTAGGACCAAGACA-GGGAGTGATC 5'& || ||| | ||||||||| &5' ------TGCTTCCGCCCCCTCACTA- 3'
RNF5hsa-miR-939beg:320end:349pic:3' GTGGGGGTCTC-GGAGTC---GAGGGGT 5'& |||.| || |.|| ||||||| &5' --CCCTCTGACTCTTCCCCCACTCCCCA 3'
RNF5hsa-miR-942beg:17end:39pic:3' GTGTACCGGTTTTGTCTCTTCT 5'& ||| |||. ||||||||| &5' CACCT--CCAGC-CAGAGAAGA 3'
RNF5hsv1-miR-H17beg:407end:429pic:3' GGCGGAGCGCGGGGTCGCGGT 5'& .||.|| |||||| | |.| &5' -TGCTTC-CGCCCCCTCACTA 3'
RNF5hsv2-miR-H10beg:12end:31pic:3' GGCGGGTGGGGGCGTGGG 5'& |.|||||||.|| .|| &5' CTGCCCACCTCCA-GCC- 3'
RNF5hsv2-miR-H10beg:407end:428pic:3' GGCG--GGTGGGGGCGTGGG 5'& .|| ||.||||| |||. &5' -TGCTTCCGCCCCCTCACT- 3'
RNF5hsv2-miR-H6starbeg:225end:243pic:3' TCCTACCTTCCCG-TCTTCTACCC 5'& .||| .||.||||| &5' --------GGGGAAGGAGGATGG- 3'
RNF5kshv-miR-K12-12starbeg:321end:342pic:3' AGTTGGTCCCGTG-GGAGGGGGT 5'& || | || |.||||||| &5' ----CCTCTG-ACTCTTCCCCCA 3'
RNF5sv40-miR-S1-5pbeg:404end:426pic:3' TTC-CGAGTAAAGTCCGGGGAGT 5'& ||| ||| || | ||||||| &5' AAGTGCT----TCCGCCCCCTCA 3'
DNA & RNA Element - SomamiR
Gene NameMutationMutation IDmiR IDChromosomeLocationRefAltmirsitemirseedSeed ClassSample NameCancer Type
RNF5chr6:g.32180302CT>CCOSM1443580hsa-miR-1253chr632180302CTCtctTCTTCTttttttgAGAGAAGAm6cTCGA-AZ-6598-01[large_intestine][caecum][carcinoma][adenocarcinoma]
RNF5chr6:g.32180302CT>CCOSM1443580hsa-miR-186-5pchr632180302CTCtcttcTTCTTTttttgCAAAGAAUm6bTCGA-AZ-6598-01[large_intestine][caecum][carcinoma][adenocarcinoma]
RNF5chr6:g.32180302CT>CCOSM1443580hsa-miR-3133chr632180302CTCtcttcTTCTTTttttgUAAAGAACm6bTCGA-AZ-6598-01[large_intestine][caecum][carcinoma][adenocarcinoma]
RNF5chr6:g.32180302CT>CCOSM1443580hsa-miR-3185chr632180302CTCtCTTCTTCTttttttgAGAAGAAGm8aTCGA-AZ-6598-01[large_intestine][caecum][carcinoma][adenocarcinoma]
RNF5chr6:g.32180302CT>CCOSM1443580hsa-miR-3653-3pchr632180302CTCtcttCTTCTTtttttgCUAAGAAGm6cTCGA-AZ-6598-01[large_intestine][caecum][carcinoma][adenocarcinoma]
RNF5chr6:g.32180302CT>CCOSM1443580hsa-miR-4699-5pchr632180302CTCtctTCTTCTttttttgAGAAGAUUm6aTCGA-AZ-6598-01[large_intestine][caecum][carcinoma][adenocarcinoma]
RNF5chr6:g.32180302CT>CCOSM1443580hsa-miR-5197-3pchr632180302CTCtctTCTTCTTtttttgAAGAAGAGm7aTCGA-AZ-6598-01[large_intestine][caecum][carcinoma][adenocarcinoma]
DNA & RNA Element - miRcode
Gene NameTypemicroRNASeed PositionSeed TypeTotal Cons%Tr Region
RNF5High_conservedmiR-7/7abchr6:321510967-mer-A118CDS
RNF5High_conservedmiR-138/138abchr6:321511197-mer-m840CDS
RNF5High_conservedmiR-146ac/146b-5pchr6:321512137-mer-A1163pUTR
RNF5High_conservedmiR-150/5127chr6:321482817-mer-A1313pUTR
RNF5High_conservedmiR-150/5127chr6:321516357-mer-m8113pUTR
RNF5High_conservedmiR-150/5127chr6:321517727-mer-A1443pUTR
RNF5High_conservedmiR-181abcd/4262chr6:321463707-mer-A156CDS, ncRNA
RNF5High_conservedlet-7/98/4458/4500chr6:321485367-mer-m8493pUTR
RNF5High_conservedmiR-187chr6:321474427-mer-m836CDS, ncRNA
RNF5High_conservedmiR-187chr6:321513427-mer-m8183pUTR
RNF5High_conservedmiR-187chr6:321514597-mer-A1223pUTR
RNF5High_conservedmiR-193/193b/193a-3pchr6:321512417-mer-m8113pUTR
RNF5High_conservedmiR-196abcchr6:321485357-mer-m8493pUTR
RNF5High_conservedmiR-196abcchr6:321511037-mer-m838CDS
RNF5High_conservedmiR-1ab/206/613chr6:321516717-mer-A1513pUTR
RNF5High_conservedmiR-200bc/429/548achr6:321481017-mer-m856CDS
RNF5High_conservedmiR-200bc/429/548achr6:321481517-mer-m8603pUTR
RNF5High_conservedmiR-204/204b/211chr6:321518027-mer-A173pUTR
RNF5High_conservedmiR-205/205abchr6:321511737-mer-A1293pUTR
RNF5High_conservedmiR-214/761/3619-5pchr6:321481658-mer313pUTR
RNF5High_conservedmiR-27abc/27a-3pchr6:321515847-mer-m8133pUTR
RNF5High_conservedmiR-101/101abchr6:321473197-mer-m831CDS, ncRNA
RNF5High_conservedmiR-29abcdchr6:321478437-mer-m851CDS
RNF5High_conservedmiR-10abc/10a-5pchr6:321480267-mer-m847CDS
RNF5High_conservedmiR-10abc/10a-5pchr6:321518307-mer-m8363pUTR
RNF5High_conservedmiR-128/128abchr6:321515837-mer-A1133pUTR
RNF5Medium_conservedmiR-504/4725-5pchr6:321480278-mer49CDS
RNF5Medium_conservedmiR-504/4725-5pchr6:321519247-mer-A1133pUTR
RNF5Medium_conservedmiR-876-5p/3167chr6:321511847-mer-A1223pUTR
RNF5Medium_conservedmiR-149chr6:321475248-mer49CDS, ncRNA
RNF5Medium_conservedmiR-149chr6:321481367-mer-A1513pUTR
RNF5Medium_conservedmiR-186chr6:321461407-mer-m8115pUTR
RNF5Medium_conservedmiR-326/330/330-5pchr6:321476877-mer-A116CDS
RNF5Medium_conservedmiR-326/330/330-5pchr6:321481387-mer-A143pUTR
RNF5Medium_conservedmiR-326/330/330-5pchr6:321484887-mer-m8113pUTR
RNF5Medium_conservedmiR-328a/328b-3pchr6:321463318-mer51CDS, ncRNA
RNF5Medium_conservedmiR-328a/328b-3pchr6:321476847-mer-m862CDS
RNF5Medium_conservedmiR-328a/328b-3pchr6:321512667-mer-A1133pUTR
RNF5Medium_conservedmiR-329/329ab/362-3pchr6:321462397-mer-A1245pUTR, ncRNA
RNF5Medium_conservedmiR-339b/339-5p/3586-5pchr6:321480257-mer-m856CDS
RNF5Medium_conservedmiR-339b/339-5p/3586-5pchr6:321518297-mer-m8243pUTR
RNF5Medium_conservedmiR-384/384-3pchr6:321461777-mer-A1115pUTR
RNF5Medium_conservedmiR-485-5p/1698/1703/1962chr6:321480377-mer-m811CDS
RNF5Medium_conservedmiR-486-5p/3107chr6:321480077-mer-m833CDS
RNF5Medium_conservedmiR-486-5p/3107chr6:321510677-mer-m829CDS
RNF5Medium_conservedmiR-495/1192chr6:321462287-mer-m8335pUTR, ncRNA
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
RNF5RAID00001413hsa-miR-196b-5pmiRNAMIMAT0001080RNF5mRNA6048CLIP-seq//Prediction0.6308
RNF5RAID00089532hsa-miR-3689dmiRNAMIMAT0019008RNF5mRNA6048Prediction0.1828
RNF5RAID00095033hsa-miR-423-5pmiRNAMIMAT0004748RNF5mRNA6048Prediction0.1828
RNF5RAID00129531hsa-let-7c-5pmiRNAMIMAT0000064RNF5mRNA6048CLIP-seq//Prediction0.6478
RNF5RAID00174629hsa-miR-4472miRNAMIMAT0018999RNF5mRNA6048Prediction0.1828
RNF5RAID00290368hsa-miR-98-5pmiRNAMIMAT0000096RNF5mRNA6048CLIP-seq//Prediction0.6478
RNF5RAID00358951hsa-miR-6851-5pmiRNAMIMAT0027602RNF5mRNA6048Prediction0.1828
RNF5RAID00562331hsa-let-7g-5pmiRNAMIMAT0000414RNF5mRNA6048CLIP-seq//Prediction0.6478
RNF5RAID00714290hsa-miR-429miRNAMIMAT0001536RNF5mRNA6048Prediction0.1828
RNF5RAID00761622hsa-let-7e-5pmiRNAMIMAT0000066RNF5mRNA6048CLIP-seq//Prediction0.6478
RNF5RAID00823241hsa-miR-6891-5pmiRNAMIMAT0027682RNF5mRNA6048Prediction0.1828
RNF5RAID00895164hsa-miR-484miRNAMIMAT0002174RNF5mRNA6048CLASH0.5483
RNF5RAID00905888hsa-miR-6816-5pmiRNAMIMAT0027532RNF5mRNA6048Prediction0.1828
RNF5RAID00985923hsa-miR-4458miRNAMIMAT0018980RNF5mRNA6048CLIP-seq//Prediction0.6308
RNF5RAID01076188hsa-miR-3173-3pmiRNAMIMAT0015048RNF5mRNA6048Prediction0.1828
RNF5RAID01096613hsa-miR-4500miRNAMIMAT0019036RNF5mRNA6048CLIP-seq//Prediction0.6308
RNF5RAID01206198hsa-miR-6763-5pmiRNAMIMAT0027426RNF5mRNA6048Prediction0.1828
RNF5RAID01225503hsa-miR-196a-5pmiRNAMIMAT0000226RNF5mRNA6048CLIP-seq//Prediction0.6308
RNF5RAID01333581hsa-miR-483-3pmiRNAMIMAT0002173RNF5mRNA6048Prediction0.1828
RNF5RAID01592631hsa-miR-6738-5pmiRNAMIMAT0027377RNF5mRNA6048Prediction0.1828
RNF5RAID01725245hsa-miR-6837-5pmiRNAMIMAT0027576RNF5mRNA6048Prediction0.1828
RNF5RAID01762312hsa-miR-3180-3pmiRNAMIMAT0015058RNF5mRNA6048Prediction0.1828
RNF5RAID01839068hsa-miR-3690miRNAMIMAT0018119RNF5mRNA6048Prediction0.1828
RNF5RAID01844571hsa-miR-3180miRNAMIMAT0018178RNF5mRNA6048Prediction0.1828
RNF5RAID01883156hsa-let-7b-5pmiRNAMIMAT0000063RNF5mRNA6048CLIP-seq//Prediction0.6478
RNF5RAID02051771hsa-miR-493-3pmiRNAMIMAT0003161RNF5mRNA6048Prediction0.1828
RNF5RAID02125409hsa-miR-6733-5pmiRNAMIMAT0027367RNF5mRNA6048Prediction0.1828
RNF5RAID02235404hsa-miR-4447miRNAMIMAT0018966RNF5mRNA6048Prediction0.1828
RNF5RAID02291187hsa-miR-1914-3pmiRNAMIMAT0007890RNF5mRNA6048Prediction0.1828
RNF5RAID02335565hsa-miR-6073miRNAMIMAT0023698RNF5mRNA6048Prediction0.1828
RNF5RAID02345884hsa-miR-4481miRNAMIMAT0019015RNF5mRNA6048Prediction0.1828
RNF5RAID02406485hsa-let-7i-5pmiRNAMIMAT0000415RNF5mRNA6048CLIP-seq//Prediction0.6478
RNF5RAID02499696hsa-let-7d-5pmiRNAMIMAT0000065RNF5mRNA6048CLIP-seq//Prediction0.6478
RNF5RAID02504318hsa-miR-5194miRNAMIMAT0021125RNF5mRNA6048Prediction0.1828
RNF5RAID02565881hsa-miR-1275miRNAMIMAT0005929RNF5mRNA6048Prediction0.1828
RNF5RAID02689724hsa-miR-6739-5pmiRNAMIMAT0027379RNF5mRNA6048Prediction0.1828
RNF5RAID02699804hsa-miR-4426miRNAMIMAT0018941RNF5mRNA6048Prediction0.1828
RNF5RAID02714224hsa-miR-6134miRNAMIMAT0024618RNF5mRNA6048Prediction0.1828
RNF5RAID02927783hsa-miR-4665-5pmiRNAMIMAT0019739RNF5mRNA6048Prediction0.1828
RNF5RAID02988475hsa-miR-296-5pmiRNAMIMAT0000690RNF5mRNA6048Prediction0.1828
RNF5RAID03011758hsa-miR-4685-5pmiRNAMIMAT0019771RNF5mRNA6048Prediction0.1828
RNF5RAID03049947hsa-miR-5702miRNAMIMAT0022495RNF5mRNA6048Prediction0.1828
RNF5RAID03083910hsa-let-7f-5pmiRNAMIMAT0000067RNF5mRNA6048CLIP-seq//Prediction0.6478
RNF5RAID03090790hsa-miR-4303miRNAMIMAT0016856RNF5mRNA6048Prediction0.1828
RNF5RAID03161019hsa-miR-2116-3pmiRNAMIMAT0011161RNF5mRNA6048Prediction0.1828
RNF5RAID03285726hsa-miR-200c-3pmiRNAMIMAT0000617RNF5mRNA6048Prediction0.1828
RNF5RAID03309088hsa-miR-3196miRNAMIMAT0015080RNF5mRNA6048Prediction0.1828
RNF5RAID03387116hsa-miR-654-5pmiRNAMIMAT0003330RNF5mRNA6048Prediction0.1828
RNF5RAID03515518hsa-miR-3153miRNAMIMAT0015026RNF5mRNA6048Prediction0.1828
RNF5RAID03560638hsa-miR-1224-3pmiRNAMIMAT0005459RNF5mRNA6048Prediction0.1828
RNF5RAID03608625hsa-let-7a-5pmiRNAMIMAT0000062RNF5mRNA6048CLIP-seq//Prediction0.6478
RNF5RAID03819837hsa-miR-625-5pmiRNAMIMAT0003294RNF5mRNA6048Prediction0.1828
RNF5RAID03935377hsa-miR-541-3pmiRNAMIMAT0004920RNF5mRNA6048Prediction0.1828
RNF5RAID03953329hsa-miR-200b-3pmiRNAMIMAT0000318RNF5mRNA6048Prediction0.1828
RNF5RAID03962720hsa-miR-7161-5pmiRNAMIMAT0028232RNF5mRNA6048Prediction0.1828
RNF5RAID04018013hsa-miR-3135bmiRNAMIMAT0018985RNF5mRNA6048Prediction0.1828
RNF5RAID04035537hsa-miR-3150a-3pmiRNAMIMAT0015023RNF5mRNA6048Prediction0.1828