DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence CDRT1; C17orf1; C17orf1A; HREP ATTTA 1-2349 2875-2879

DNA & RNA Element - CircNet Circ ID GITPosition Express Symbol Entrez Category Strand Refered Name hsa-circ-CDRT1-overlap.4 NM_006382Tchr17:15508536-15546130 expressed CDRT1 374286 protein-coding x chr17:15508536-15546130_A549_poly(A)- hsa-circ-CDRT1.2 NM_001282540Tchr17:15508536-15519123 expressed CDRT1 374286 protein-coding x chr17:15508536-15519123_A549_poly(A)- hsa-circ-CDRT1.3 NM_006382Tchr17:15516014-15519123 expressed CDRT1 374286 protein-coding x chr17:15516014-15519123_A549_poly(A)- hsa-circ-CDRT1.6 NM_001282540Tchr17:15508536-15508737 expressed CDRT1 374286 protein-coding x chr17:15508536-15508737_PA1_RNaseR hsa-circ-CDRT1.7 NM_006382Tchr17:15499827-15501967 expressed CDRT1 374286 protein-coding - not_available hsa-circ-CDRT1.9 NM_006382Tchr17:15516014-15517347 expressed CDRT1 374286 protein-coding - not_available

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004487 hsa-let-7f-2* 374286 CDRT1 ccuuucuGUCAUC--UGACAUAUc || |:| |||||||: auuucuuCAAUGGGAACUGUAUGa 2 16 94 117 [hg19:17:15496712-15496735:-] 0.7619 134 0 -10.01 -0.1594 MIMAT0004555 hsa-miR-10a* 374286 CDRT1 auaagggGAUCUAUGCUUAAAc | |||| ||||||| cagauggCAAGAUCCGAAUUUa 2 16 70 91 [hg19:17:15496738-15496759:-] 0.7585 159 7 -10.51 -1.0902 MIMAT0004567 hsa-miR-219-1-3p 374286 CDRT1 gcccUGCAGGUCUGAGUUGAGa |: |||| ||||||||| gaucAUCUCCA-ACUCAACUCa 2 19 150 170 [hg19:17:15492119-15492139:-] 0.4946 164 7 -18.50 -0.6058 MIMAT0004598 hsa-miR-141* 374286 CDRT1 agGUUGU-GACAUG---ACC-UUCUAc ||:|: ||||:| ||| ||||| auCAGCGCCUGUGCAGAUGGCAAGAUc 2 21 57 83 [hg19:17:15496746-15496772:-] 0.7346 126 0 -21.44 -0.7383 MIMAT0004675 hsa-miR-219-2-3p 374286 CDRT1 ugUCUACAGGUCGGUGUUAAGa |||| | ::||||||: caAGAUCCGAAUUUACAAUUUc 2 21 77 98 [hg19:17:15496731-15496752:-] 0.7585 136 0 -12.06 -0.1686 MIMAT0000685 hsa-miR-34b* 374286 CDRT1 guuAGUCGA-UUACUGUGACGGAu ||| || ||| ||||||||| aacUCAACUCAAUCACACUGCCUa 2 21 160 183 [hg19:17:15492106-15492129:-] 0.4942 175 7 -21.44 -0.7651 MIMAT0004680 hsa-miR-130b* 374286 CDRT1 caucACGUUGUCCCUUUCUca | |||:| |||||| aacuUACAAUA-AGAAAGAau 3 18 281 300 [hg19:17:15491989-15492008:-] 0.4976 131 0 -9.19 -0.1646 MIMAT0004686 hsa-miR-367* 374286 CDRT1 ucucAACGUAUAA---UCGUUGUCa || : |||| :||||||| guccUUCUUUAUUCAGGGCAACAG- 2 19 155 178 [hg19:17:15496651-15496674:-] 0.7653 149 7 -11.47 -0.6237 MIMAT0000723 hsa-miR-371-3p 374286 CDRT1 ugUGA-GUUUUCUACCGCCGUGAa ||| | || || ||||||| acACUGCCUAAAAU--CGGCACUg 2 22 174 195 [hg19:17:15492094-15492115:-] 0.4942 149 7 -16.91 -0.6537 MIMAT0004688 hsa-miR-374a* 374286 CDRT1 uuaaUGUUAUG-UUAGACUAUUc || :||: || |||||| gggaACUGUAUGAAGGUGAUAAa 2 19 105 127 [hg19:17:15496702-15496724:-] 0.7619 125 6 -6.12 -0.1083 MIMAT0004703 hsa-miR-335* 374286 CDRT1 ccaguccucguuAUUACUUUuu | |||||| ggggaauccucuUUAUGAAAca 3 11 259 280 [hg19:17:15492009-15492030:-] 0.4976 122 0 -5.54 -0.1002 MIMAT0002176 hsa-miR-485-3p 374286 CDRT1 ucucUCCUCUCGGCACAUACUg | |:|| | ||||||| uucaAUGGGAAC--UGUAUGAa 2 19 99 118 [hg19:17:15496711-15496730:-] 0.7619 147 7 -11.30 -1.1149 MIMAT0004766 hsa-miR-146b-3p 374286 CDRT1 ggucuugacucagguGUCCCGu |||||| cuguccuucuuuauuCAGGGCa 2 8 153 174 [hg19:17:15496655-15496676:-] 0.7653 120 6 -17.26 -0.2336 MIMAT0002823 hsa-miR-512-3p 374286 CDRT1 cuggaGUCGAUACUGUCGUGAa |||: : |:||||||| cuaucCAGUAGAGGCAGCACUg 2 18 216 237 [hg19:17:15492052-15492073:-] 0.4959 157 7 -20.36 -0.1382 MIMAT0002873 hsa-miR-502-5p 374286 CDRT1 auCGUG-GGUCUAUCG-UUCCUa |||| || :|:|| ||||| caGCACAACAAGUGGCAAAGGAc 2 20 86 108 [hg19:17:15492181-15492203:-] 0.5370 126 0 -18.90 -0.2767 MIMAT0002877 hsa-miR-513a-5p 374286 CDRT1 uacuguggaGGGACACUu :||||||| ccccagggcUCCUGUGAg 2 10 30 47 [hg19:17:15492242-15492259:-] 0.5370 141 7 -15.86 -0.2250 MIMAT0002880 hsa-miR-508-3p 374286 CDRT1 agAUGAGGUUUUCCGAUGUUAgu ||: | || :|||||| uuUAUGAAACAAACUUACAAUaa 3 22 270 292 [hg19:17:15491997-15492019:-] 0.4976 129 0 -8.32 -0.1018 MIMAT0002880 hsa-miR-508-3p 374286 CDRT1 agaugAGGUUUUCCGAUGUUAGu |||:|| :||||||: caagaUCCGAA--UUUACAAUUu 2 19 77 97 [hg19:17:15496732-15496752:-] 0.7585 135 0 -13.23 -0.1182 MIMAT0003236 hsa-miR-571 374286 CDRT1 gagugagucUACCGGUUGAGu || ||||||| ggagugaucAUCUCCAACUCa 2 13 145 165 [hg19:17:15492124-15492144:-] 0.4946 144 7 -13.44 -0.9834 MIMAT0003247 hsa-miR-582-5p 374286 CDRT1 ucaUUGACCAACUUG---UUGACAUu ||:| || ||: ||||||| uacAAUUUCUUCAAUGGGAACUGUAu 2 21 90 115 [hg19:17:15496714-15496739:-] 0.7619 151 7 -9.46 -0.8565 MIMAT0003248 hsa-miR-583 374286 CDRT1 cauUACCCUGGAAGGAGAAAc |||||: |||||||| gauAUGGGG-AAUCCUCUUUa 2 19 254 273 [hg19:17:15492016-15492035:-] 0.4976 156 7 -20.52 -1.1133 MIMAT0004806 hsa-miR-548c-5p 374286 CDRT1 ccGUUUUUGGCGUUAAUG--AAAa |||:| ||| | |||| ||| ggCAAGAUCCGAAUUUACAAUUUc 2 21 75 98 [hg19:17:15496731-15496754:-] 0.7585 120 0 -16.77 -1.2040 MIMAT0003289 hsa-miR-620 374286 CDRT1 uaaagauaUAGAUAGAGGUa ||| ||||||| guggagugAUC-AUCUCCAa 2 13 143 161 [hg19:17:15492128-15492146:-] 0.4946 146 7 -11.97 -0.2540 MIMAT0003291 hsa-miR-622 374286 CDRT1 cgAGGUUGGAGUCGUC-UGACa ||||:: :|||| |||| uaUCCAGUAGAGGCAGCACUGa 2 20 217 238 [hg19:17:15492051-15492072:-] 0.4959 123 0 -19.94 -0.2898 MIMAT0003292 hsa-miR-623 374286 CDRT1 uggguUGUCGGGGACGUU-CCCUa ||| :::|| ||| |||| aauuuACAAUUUCUUCAAUGGGAa 2 19 86 109 [hg19:17:15496720-15496743:-] 0.7619 126 0 -16.97 -1.2325 MIMAT0003338 hsa-miR-660 374286 CDRT1 guugaggcuAUACGUUACCCau | | ||||||| uuuacaauuUCUUCAAUGGGaa 3 14 88 109 [hg19:17:15496720-15496741:-] 0.7619 129 0 -16.57 -0.2009 MIMAT0010251 hsa-miR-449c 374286 CDRT1 ugucggcgaucGUUA-UGUGACGGAu |||| ||||||||| ccaacucaacuCAAUCACACUGCCUa 2 15 158 183 [hg19:17:15492106-15492131:-] 0.4942 161 7 -21.15 -0.7688 MIMAT0003886 hsa-miR-769-5p 374286 CDRT1 ucGAG-UCUUGGG---UCUCCA-GAGu :|| || |:|| |||||| ||| ccUUCAAGCAUCCCAAAGAGGUGCUCg 2 21 4 30 [hg19:17:15496799-15496809,15498062-15498077:-] 0.7351 122 0 -21.89 -0.6286 MIMAT0003887 hsa-miR-769-3p 374286 CDRT1 uugguuCUGGGGCCUC-UAGGGUc |:||:: || |||||| -----uGGCCUUCAAGCAUCCCAa 2 18 1 19 [hg19:17:15498062-15498080:-] 0.7594 121 6 -16.89 -0.9810 MIMAT0010357 hsa-miR-670 374286 CDRT1 guGGUGUAUGUGAGUCCCug || : | :|:|||||| guCCUUCUUUAUUCAGGGca 3 19 155 174 [hg19:17:15496655-15496674:-] 0.7653 134 0 -17.79 -0.1616 MIMAT0004915 hsa-miR-220c 374286 CDRT1 ucagaaguGUUGUCG-GGACACa || |||| |||||| cuccggguCAUCAGCGCCUGUGc 2 15 48 70 [hg19:17:15496759-15496781:-] 0.7346 126 6 -19.44 -0.2758 MIMAT0004946 hsa-miR-744* 374286 CDRT1 uccaacuccAAUCACCGUUGUc | || ||||||| cuucuuuauUCAG-GGCAACAg 2 14 158 178 [hg19:17:15496651-15496671:-] 0.7653 143 7 -15.57 -0.6025 MIMAT0004952 hsa-miR-665 374286 CDRT1 uccccggagucgGAGGACCa ||||||| ucagaauggcaaCUCCUGGa 2 9 65 84 [hg19:17:15492205-15492224:-] 0.5370 140 7 -17.74 -0.9071 MIMAT0005894 hsa-miR-1243 374286 CDRT1 gugaggauauuaacUAGGUCAa ||||||| caaauaauccaccuAUCCAGUa 2 9 204 225 [hg19:17:15492064-15492085:-] 0.4959 140 7 -11.43 -0.7860 MIMAT0005924 hsa-miR-1270 374286 CDRT1 ugugucgagaaggUA-UAGAGGUc || ||||||| agaacguggagugAUCAUCUCCAa 2 11 138 161 [hg19:17:15492128-15492151:-] 0.4946 141 7 -15.25 -0.2743 MIMAT0005935 hsa-miR-548i 374286 CDRT1 ccGUUUUAGGCGUUAAUG--AAAa |||:||||| | |||| ||| ggCAAGAUCCGAAUUUACAAUUUc 2 21 75 98 [hg19:17:15496731-15496754:-] 0.7585 128 0 -21.56 -1.2056 MIMAT0005944 hsa-miR-1252 374286 CDRT1 auuuaCUUAAGU-UAAAGGAAGa |||||:| | ||:|||| gauccGAAUUUACAAUUUCUUCa 2 18 80 102 [hg19:17:15496727-15496749:-] 0.7585 148 0 -10.38 -0.1215 MIMAT0005956 hsa-miR-1324 374286 CDRT1 cuUUCACGUAUC--UUAAGACA-GACc || ||| || :|| |||| ||| ccAAUGGCAGAGGCGAUCCUGUGCUGu 2 23 130 156 [hg19:17:15496673-15496699:-] 0.7653 125 0 -12.42 -0.4202 MIMAT0011160 hsa-miR-2116 374286 CDRT1 ucuggaGGAUACGAUUCUUgg |:|| |||||| aacaaaCUUACAAUAAGAAag 3 16 277 297 [hg19:17:15491992-15492012:-] 0.4976 127 0 -7.91 -0.1739 MIMAT0011161 hsa-miR-2116* 374286 CDRT1 cccUCAAGAACCGUACCCUcc | ||||| |||||| acaAUUUCUU-CAAUGGGAac 3 19 91 110 [hg19:17:15496719-15496738:-] 0.7619 132 0 -11.50 -0.1195 MIMAT0011162 hsa-miR-2117 374286 CDRT1 gacaggaaCCGUUUCUCUUGu ||| ||||||| uggaaaaaGGC--AGAGAACg 2 14 125 143 [hg19:17:15492146-15492164:-] 0.5159 142 7 -15.22 -0.2741 MIMAT0014981 hsa-miR-3119 374286 CDRT1 cgGUAGUUUCA--AUUUUCGGu :|| ||:|| |||||||| ugUAUGAAGGUGAUAAAAGCCa 2 19 111 132 [hg19:17:15496697-15496718:-] 0.7653 161 7 -17.49 -1.2714 MIMAT0015008 hsa-miR-3140 374286 CDRT1 ugAUGGACUU-AAGGGUUUUCGa |:: |||| | :|||||| acUGUAUGAAGGUGAUAAAAGCc 2 21 109 131 [hg19:17:15496698-15496720:-] 0.7653 135 6 -13.81 -0.1401 MIMAT0015015 hsa-miR-3144-3p 374286 CDRT1 auuucucuggcUUGUCCAUAUa |:|||||||| ----------cAGCAGGUAUAc 2 12 1 12 [hg19:17:15492277-15492288:-] 0.5370 151 7 -12.04 -0.2151 MIMAT0015028 hsa-miR-3154 374286 CDRT1 agACGAGGGUUGAGGGGAAGAc ||||| :: :||||||| ggUGCUCGACGUGUCCCUUCUc 2 21 23 44 [hg19:17:15496785-15496806:-] 0.7107 156 7 -23.16 -0.8611 MIMAT0015031 hsa-miR-3157 374286 CDRT1 ucUGACGUGAUCGGACCGACUu :| |||||: :|||||||| agGCAGCACUGAUCUGGCUGAu 2 21 227 248 [hg19:17:15492041-15492062:-] 0.4976 172 7 -30.93 -0.1079 MIMAT0015039 hsa-miR-3165 374286 CDRT1 acUCCAGUGUAACGUAGGUGGa | || ||| ||||||| caAAGU-ACAAAUAAUCCACCu 2 21 197 217 [hg19:17:15492072-15492092:-] 0.4942 146 7 -17.17 -0.9691 MIMAT0015054 hsa-miR-3177 374286 CDRT1 ugCACAGGGGUCACGG-CACGu | ||| :||| ||| |||| ccGGGUCAUCAGCGCCUGUGCa 2 20 50 71 [hg19:17:15496758-15496779:-] 0.7346 131 0 -26.82 -0.4190 MIMAT0015060 hsa-miR-548w 374286 CDRT1 ucCGUUUUUGGCGUCAAUG--AAAa ||||:| ||| | |||| ||| ugGCAAGAUCCGAAUUUACAAUUUc 2 22 74 98 [hg19:17:15496731-15496755:-] 0.7585 125 0 -16.87 -1.2040 MIMAT0015065 hsa-miR-3185 374286 CDRT1 ggCG-UCU-GGCU--GGCG--GAAGAAGa || ||| |||| :: | :|||||| ugGCAAGAUCCGAAUUUACAAUUUCUUCa 2 22 74 102 [hg19:17:15496727-15496755:-] 0.7585 129 6 -19.00 -0.4209 MIMAT0015071 hsa-miR-3189 374286 CDRT1 gaugggguAGUCUGGGUUCCc ||| ||||||| gaguggauUCACCCCCAAGGu 2 14 45 65 [hg19:17:15492224-15492244:-] 0.5370 149 7 -15.73 -0.1783 MIMAT0016855 hsa-miR-4302 374286 CDRT1 gagcGACUCGGUGUGACc || | :||||||| ucaaCUCAAUCACACUGc 2 15 163 180 [hg19:17:15492109-15492126:-] 0.4942 150 7 -13.69 -0.7990 MIMAT0016870 hsa-miR-4319 374286 CDRT1 caccGAAACGAGUCCCu |||| :|||||| ccuuCUUUAUUCAGGGc 2 14 157 173 [hg19:17:15496656-15496672:-] 0.7653 141 6 -16.32 -0.1723 MIMAT0016877 hsa-miR-4256 374286 CDRT1 uggAAGUAG----UCCAGUCUa |||| | |||||||| ggaUUCACCCCCAAGGUCAGAa 2 16 49 70 [hg19:17:15492219-15492240:-] 0.5370 146 7 -16.13 -0.7619 MIMAT0016908 hsa-miR-4277 374286 CDRT1 cacaugacacgAGUCUUGACg | :|||||| aauuucuucaaUGGGAACUGu 2 11 93 113 [hg19:17:15496716-15496736:-] 0.7619 126 6 -10.50 -0.1073 MIMAT0016914 hsa-miR-4283 374286 CDRT1 uuugAGCGACUCGGGGu |:| ||||||| aaugUUGAAGAGCCCCa 2 14 18 34 [hg19:17:15492255-15492271:-] 0.5370 145 7 -20.13 -0.1139 MIMAT0016919 hsa-miR-4292 374286 CDRT1 gguuccggCCGGGUCCCc | ||||||| guugaagaGCCCCAGGGc 2 11 21 38 [hg19:17:15492251-15492268:-] 0.5370 142 7 -17.35 -0.1803 MIMAT0000250 hsa-miR-139-5p 374286 CDRT1 gaccucugUGCACGUGACAUcu |:| | |||||| uuucuucaAUGGGAACUGUAug 3 15 95 116 [hg19:17:15496713-15496734:-] 0.7619 130 0 -10.55 -0.1005 MIMAT0000255 hsa-miR-34a 374286 CDRT1 ugUUG-GUCGA-UU-CUGUGACGGu ||| || || || |||||||| ccAACUCAACUCAAUCACACUGCCu 2 21 158 182 [hg19:17:15492107-15492131:-] 0.4942 157 7 -19.33 -0.9281 MIMAT0000266 hsa-miR-205 374286 CDRT1 gucugaggccacCUUACUUCCu | ||||||| ucaaugggaacuGUAUGAAGGu 2 11 100 121 [hg19:17:15496708-15496729:-] 0.7619 142 7 -13.60 -0.9742 MIMAT0000423 hsa-miR-125b 374286 CDRT1 aguguucaaucccaGAGUCCCu :|||||| gcuguccuucuuuaUUCAGGGc 2 9 152 173 [hg19:17:15496656-15496677:-] 0.7653 124 6 -11.77 -0.1707 MIMAT0000435 hsa-miR-143 374286 CDRT1 cucgAUGUCACGAAGUAGAGu |: |||| ||||||| aacgUGGAGUG-AUCAUCUCc 2 18 140 159 [hg19:17:15492130-15492149:-] 0.4946 151 7 -16.98 -0.4393 MIMAT0000443 hsa-miR-125a-5p 374286 CDRT1 aguguccaauuucccaGAGUCCCu :|||||| gugcuguccuucuuuaUUCAGGGc 2 9 150 173 [hg19:17:15496656-15496679:-] 0.7653 124 6 -11.77 -0.1723 MIMAT0000446 hsa-miR-127-3p 374286 CDRT1 ucgguucgagucugcCUAGGCu |||||| cugugcagauggcaaGAUCCGa 2 8 65 86 [hg19:17:15496743-15496764:-] 0.7346 120 6 -21.03 -0.2623 MIMAT0000448 hsa-miR-136 374286 CDRT1 aggUAGUAGUUUUGUUUACC-UCa :| || |||:| ||||| || aagGUGAUAAAAGCCAAUGGCAGa 2 21 117 140 [hg19:17:15496689-15496712:-] 0.7653 132 0 -10.94 -0.8118 MIMAT0000686 hsa-miR-34c-5p 374286 CDRT1 cgUUAGUCGA-UUGAUGUGACGGa | ||| || ||: |||||||| caACUCAACUCAAUCACACUGCCu 2 22 159 182 [hg19:17:15492107-15492130:-] 0.4942 168 7 -21.02 -0.9216 MIMAT0000722 hsa-miR-370 374286 CDRT1 ugguccaaggugggGUCGUCCg ||||||| --------------CAGCAGGu 2 9 1 8 [hg19:17:15492281-15492288:-] 0.5370 140 7 -13.88 -0.2425 MIMAT0000737 hsa-miR-382 374286 CDRT1 gcUUAGGUG--GUGC-UUG-UUGAAg ||||| | :|:| ||| ||||| ggAAUCCUCUUUAUGAAACAAACUUa 2 21 261 286 [hg19:17:15492003-15492028:-] 0.4976 126 0 -20.14 -1.2154 MIMAT0001541 hsa-miR-449a 374286 CDRT1 ugGUCGA-UU--GUUA-UGUGACGGu || || || |||| |||||||| ucCAACUCAACUCAAUCACACUGCCu 2 21 157 182 [hg19:17:15492107-15492132:-] 0.4942 161 7 -21.35 -0.9216 MIMAT0003163 hsa-miR-539 374286 CDRT1 ugugugguuccUAUUAAAGAGg | |||||||: gauccgaauuuACAAUUUCUUc 2 12 80 101 [hg19:17:15496728-15496749:-] 0.7585 131 0 -11.77 -0.1998 MIMAT0003327 hsa-miR-449b 374286 CDRT1 cgGUCGA-UU--GUUA-UGUGACGGa || || || |||| |||||||| ucCAACUCAACUCAAUCACACUGCCu 2 21 157 182 [hg19:17:15492107-15492132:-] 0.4942 161 7 -23.49 -0.9216 MIMAT0004911 hsa-miR-874 374286 CDRT1 agcCAGG--GAGCCCGGUCCCGUc |||| ||: :||||||| gcuGUCCUUCUUUAUUCAGGGCAa 2 20 152 175 [hg19:17:15496654-15496677:-] 0.7653 150 7 -24.95 -1.2432

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G097588 CDRT1 Homo sapiens 374286