DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004513 hsa-miR-101* 85376 RIMBP3 ucguAGUCGUGAC-ACUAUUGAc ||| ::|| |||||||| cauuUCAAAGUUGCUGAUAACUa 2 19 244 266 [hg19:22:20456116-20456138:-] 0.5509 157 7 -13.27 -0.8896 MIMAT0004596 hsa-miR-138-2* 85376 RIMBP3 uuGGGACCACAGCACUUU-AUCg |||| | || ||||| ||| ucCCCUAGGCUC-UGAAAGUAGc 2 21 156 177 [hg19:22:20456205-20456226:-] 0.5509 126 0 -18.23 -0.2403 MIMAT0004607 hsa-miR-138-1* 85376 RIMBP3 ccGGGACCACAACAC-UUCAUCg |||| | | | || |||||| ucCCCUAG-GCUCUGAAAGUAGc 2 21 156 177 [hg19:22:20456205-20456226:-] 0.5509 126 6 -18.71 -0.2403 MIMAT0004688 hsa-miR-374a* 85376 RIMBP3 uuAAUGUUAUGUUAGACUAUUc || ||| :: : ||||||| caUUUCAAAGUUG-CUGAUAAc 2 21 244 264 [hg19:22:20456118-20456138:-] 0.5509 150 7 -7.71 -0.4926 MIMAT0004694 hsa-miR-342-5p 85376 RIMBP3 aguuAGUGUCUAUCGUGGGGa ||||| |||||||| acccUCACA-CCAGCACCCCu 2 18 70 89 [hg19:22:20456293-20456312:-] 0.5428 155 7 -25.26 -0.4577 MIMAT0002814 hsa-miR-432 85376 RIMBP3 gguggguuacUGGAUGAGGUUCu |: |:||||||| cauaaguagcAUGUGCUCCAAGu 2 14 99 121 [hg19:22:20456261-20456283:-] 0.5469 149 7 -16.86 -0.3434 MIMAT0002824 hsa-miR-498 85376 RIMBP3 cuuUUUGCGGGGGA-CCGA-ACUUu ||:||:||||| |||| |||| cuuAAGCGUCCCCUAGGCUCUGAAa 2 21 148 172 [hg19:22:20456210-20456234:-] 0.5509 147 0 -31.63 -0.5801 MIMAT0002835 hsa-miR-526b 85376 RIMBP3 ugucuuucacgaagGGAGUUCUc :||||||| gccuuguacgaaagUCUCAAGAa 2 10 344 366 [hg19:22:20456016-20456038:-] 0.5509 141 7 -14.10 -0.9852 MIMAT0002839 hsa-miR-525-3p 85376 RIMBP3 gcgAGAUUUCCCUUCGCGGAAg | || :| |||||||||| aggUAUACGGAGAAGCGCCUUu 2 20 271 292 [hg19:22:20456090-20456111:-] 0.5509 167 7 -21.14 -0.7243 MIMAT0002850 hsa-miR-524-3p 85376 RIMBP3 ugAGGUUUCCCUUCGCGGAAg | :| :| |||||||||| ggUAUACGGAGAAGCGCCUUu 2 20 272 292 [hg19:22:20456090-20456110:-] 0.5509 163 7 -21.14 -0.7243 MIMAT0002882 hsa-miR-510 85376 RIMBP3 cacuaacggugagaGGACUCAu ||||||| uagcaggacuuaagCCUGAGUu 2 9 174 195 [hg19:22:20456187-20456208:-] 0.5509 140 7 -16.69 -0.6654 MIMAT0003165 hsa-miR-545 85376 RIMBP3 cguguguuauuuacaAACGACu |||||| gaagccauuucaaagUUGCUGa 2 8 239 260 [hg19:22:20456122-20456143:-] 0.5509 120 6 -13.59 -0.1008 MIMAT0003235 hsa-miR-570 85376 RIMBP3 cguuuCCAUUAACG-ACAAAAGc || | ||: ||||||| ucuguGGCCAAUGUGUGUUUUCu 2 18 294 316 [hg19:22:20456066-20456088:-] 0.5509 148 7 -8.28 -0.2294 MIMAT0003255 hsa-miR-588 85376 RIMBP3 caagauuggguaACACCGGUu |||||||| agcgccuuuuucUGUGGCCAa 2 10 284 304 [hg19:22:20456078-20456098:-] 0.5509 145 7 -18.23 -1.0536 MIMAT0003280 hsa-miR-612 85376 RIMBP3 uuccucgagUCUUCGGGACGGGUCg || | ||:||||||| ------gcaAGCAUCCUUGCCCAGg 2 17 1 19 [hg19:22:20456363-20456381:-] 0.6063 160 7 -21.04 -0.6957 MIMAT0003305 hsa-miR-635 85376 RIMBP3 ccuGUA-ACAAAGU-CACG-GGUUCa ||| || || |||| ||||| cacCAUAAGUAGCAUGUGCUCCAAGu 2 21 96 121 [hg19:22:20456261-20456286:-] 0.5469 122 0 -18.24 -0.2877 MIMAT0003332 hsa-miR-656 85376 RIMBP3 ucUCCAACUGACAUAUU-AUAa | |||| ||| |||| ||| caAAGUUG-CUG-AUAACUAUg 2 20 249 268 [hg19:22:20456114-20456133:-] 0.5509 123 0 -7.99 -0.2568 MIMAT0004909 hsa-miR-450b-5p 85376 RIMBP3 auaagucCUUGUAU-AACGUUUu ||:: || ||||||| uaagccuGAGU-UAUUUGCAAAa 2 16 184 205 [hg19:22:20456177-20456198:-] 0.5509 144 7 -11.80 -0.9804 MIMAT0004912 hsa-miR-890 85376 RIMBP3 guugacUACGGAAAGGUUCAu ||| : ||||||| aguagcAUG-UGCUCCAAGUg 2 16 103 122 [hg19:22:20456260-20456279:-] 0.5509 141 7 -16.61 -0.1477 MIMAT0004913 hsa-miR-891b 85376 RIMBP3 aguuacugaguccaUUCAACGu ||||||| gagaagccauuucaAAGUUGCu 2 9 237 258 [hg19:22:20456124-20456145:-] 0.5509 140 7 -9.81 -0.4411 MIMAT0004982 hsa-miR-939 85376 RIMBP3 guggggGUCUCGGAGUCG-AGGGGu :|| |:| ||| ||||| ugauggUAGUCCUUAAGCGUCCCCu 2 19 137 161 [hg19:22:20456221-20456245:-] 0.5509 122 0 -20.52 -0.5615 MIMAT0005827 hsa-miR-1182 85376 RIMBP3 cagUGUAGGGAGGGUUCUGGGAg :|| | |:| ||||||| gaaGCAAGCGUUC--AGACCCUc 2 21 55 75 [hg19:22:20456307-20456327:-] 0.5428 145 7 -20.04 -0.2201 MIMAT0005869 hsa-miR-1205 85376 RIMBP3 gaguuucGUUUGGGAC-GUCu || |||||| ||| ggcugcuCACACCCUGCCAGa 2 14 31 51 [hg19:22:20456331-20456351:-] 0.5745 121 0 -18.95 -0.1836 MIMAT0005871 hsa-miR-1207-5p 85376 RIMBP3 ggGGAGGGUCGGAGGGACGGu |: |:|| | ||||||| ggCUGCUCA--CACCCUGCCa 2 20 31 49 [hg19:22:20456333-20456351:-] 0.5745 148 7 -23.83 -0.7512 MIMAT0005876 hsa-miR-1285 85376 RIMBP3 uccagagUGAAACAACGGGUCu :| | |||||||| ---gcaaGCAUCCUUGCCCAGg 2 16 1 19 [hg19:22:20456363-20456381:-] 0.6063 147 7 -16.73 -0.7031 MIMAT0005920 hsa-miR-1266 85376 RIMBP3 ucgggacaagaugUCGGGACUCc | ||||||| acacaacaagccaACCCCUGAGa 2 11 210 232 [hg19:22:20456150-20456172:-] 0.5509 142 7 -19.37 -0.9052 MIMAT0007890 hsa-miR-1914* 85376 RIMBP3 ggaGGGUCACGCCCUGGGGAGg |:|| | | ||||||| accCUCACACCAGCACCCCUCc 2 20 70 91 [hg19:22:20456291-20456312:-] 0.5428 151 7 -26.74 -0.2316 MIMAT0011158 hsa-miR-2115 85376 RIMBP3 agguagucCUCAGUAC-CUUCGa ||||| || ||||| accccugaGAGUC-UGAGAAGCc 2 15 223 244 [hg19:22:20456138-20456159:-] 0.5509 120 0 -20.79 -0.7386 MIMAT0015001 hsa-miR-3135 85376 RIMBP3 guGACGUCAGAGUCGGAUCCGu || || || ||||||| ucCUUAAGCGUC-CCCUAGGCu 2 21 146 166 [hg19:22:20456216-20456236:-] 0.5509 146 7 -17.44 -0.2564 MIMAT0015008 hsa-miR-3140 85376 RIMBP3 ugaUGGACU---UAAGGGUUUUCGa :||||| |||: ||||||| uaaGCCUGAGUUAUUUGCAAAAGCa 2 20 184 208 [hg19:22:20456174-20456198:-] 0.5509 162 7 -19.44 -0.8821 MIMAT0015011 hsa-miR-3142 85376 RIMBP3 agaCUUCCA-A-GUCU-UUC-CGGAa | |||| | |:|| ||| |||| augGCAGGUAUACGGAGAAGCGCCUu 2 20 266 291 [hg19:22:20456091-20456116:-] 0.5509 120 0 -19.70 -0.6935 MIMAT0015015 hsa-miR-3144-3p 85376 RIMBP3 auuuCUCUGGCU--UGUCCAUAUa || | | | :|||||||| ugcuGAUAACUAUGGCAGGUAUAc 2 19 255 278 [hg19:22:20456104-20456127:-] 0.5509 149 7 -13.40 -0.2047 MIMAT0015046 hsa-miR-3171 85376 RIMBP3 cuauauaugucuaagguAUGUAGa |||||| aagucucaagaaaagucUACAUCu 2 8 355 378 [hg19:22:20456004-20456027:-] 0.5509 120 6 -10.64 -0.2666 MIMAT0015057 hsa-miR-3180-5p 85376 RIMBP3 gcugcaccccGCCUCGCAGAC-CUUc | ||| ||||| ||| aagccaacccCUGAGAGUCUGAGAAg 2 16 217 242 [hg19:22:20456140-20456165:-] 0.5509 123 0 -17.19 -0.5509 MIMAT0015075 hsa-miR-3191 85376 RIMBP3 gacagaccggucgaUGCAGGGGu :||||||| augguaguccuuaaGCGUCCCCu 2 10 139 161 [hg19:22:20456221-20456243:-] 0.5509 141 7 -20.48 -0.6716 MIMAT0015085 hsa-miR-3200 85376 RIMBP3 gucUGGACUCAUC-GCGUUC-CAc :|| ||| || ||||| || ccuGCCAGAGGAGAAGCAAGCGUu 2 20 43 66 [hg19:22:20456316-20456339:-] 0.5428 122 0 -14.43 -0.1429 MIMAT0016853 hsa-miR-4300 85376 RIMBP3 cuUCAUCAGG---UCG-AGGGu :||||||| ||| |||| auGGUAGUCCUUAAGCGUCCCc 2 17 139 160 [hg19:22:20456222-20456243:-] 0.5509 123 0 -20.86 -0.8648 MIMAT0016909 hsa-miR-4279 85376 RIMBP3 cuuCGGCCCUCCUCUc ||| ||||||| ccuGCC-AGAGGAGAa 2 14 43 57 [hg19:22:20456325-20456339:-] 0.5428 143 7 -15.22 -0.1840 MIMAT0016923 hsa-miR-4329 85376 RIMBP3 cacCUUGAUCCCAGAGUcc | || | |||||| cuuGUACGAAAGUCUCAag 3 17 346 364 [hg19:22:20456018-20456036:-] 0.5509 128 0 -10.14 -0.1382 MIMAT0000089 hsa-miR-31 85376 RIMBP3 ucgauaCGGUCGUA-GAACGGa || ||||| |||||| ------GCAAGCAUCCUUGCCc 2 16 1 16 [hg19:22:20456366-20456381:-] 0.6063 131 6 -17.22 -0.6553 MIMAT0000264 hsa-miR-203 85376 RIMBP3 gaucacCAGGAUUU---GUAAAGUg |||: |:| ||||||| cugagaGUCUGAGAAGCCAUUUCAa 2 17 227 251 [hg19:22:20456131-20456155:-] 0.5509 147 7 -12.56 -0.5846 MIMAT0000424 hsa-miR-128 85376 RIMBP3 uuucucuggccaaGUGACACu ||||||| gugcuccaagugcCACUGUGu 2 9 111 131 [hg19:22:20456251-20456271:-] 0.5509 140 7 -13.44 -0.4915 MIMAT0000428 hsa-miR-135a 85376 RIMBP3 aguGUAUCCUU--AUUUUUCGGUAu | |: ||: |:|:||||||| accCCUGAGAGUCUGAGAAGCCAUu 2 21 223 247 [hg19:22:20456135-20456159:-] 0.5509 155 7 -15.38 -0.4326 MIMAT0000430 hsa-miR-138 85376 RIMBP3 gccGGACUAAGUGUUGUGGUCGa :| || | | |||||||| cguUCAGACCCUC-ACACCAGCa 2 21 63 84 [hg19:22:20456298-20456319:-] 0.5428 150 7 -16.81 -0.8032 MIMAT0000758 hsa-miR-135b 85376 RIMBP3 aguGUAUCCUU--ACUUUUCGGUAu | |: ||: |||:||||||| accCCUGAGAGUCUGAGAAGCCAUu 2 21 223 247 [hg19:22:20456135-20456159:-] 0.5509 159 7 -17.85 -0.4326 MIMAT0004763 hsa-miR-488 85376 RIMBP3 cugguuCUUUAUCGG-AAAGUu ||:| |||| ||||| gagucuGAGA-AGCCAUUUCAa 2 16 231 251 [hg19:22:20456131-20456151:-] 0.5509 121 0 -15.01 -0.6028 MIMAT0004922 hsa-miR-875-5p 85376 RIMBP3 gugGACUAUU-UUGAC-UCCAUAu ||||||| |: | |||||| uugCUGAUAACUAUGGCAGGUAUa 2 20 254 277 [hg19:22:20456105-20456128:-] 0.5509 130 6 -17.70 -0.6585

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G056452 RIMBP3 Homo sapiens 85376

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile KIAA1666 hsa-miR-138 beg:66 end:84 pic:3' GCCGGACTAAGTGTTGTGGTCGA 5'& || | | |||||||| &5' ------GACCCTC-ACACCAGC- 3' KIAA1666 hsa-miR-128 beg:113 end:131 pic:3' TTTCTCTGGC-CAA-GTGACACT 5'& || || ||||||| &5' -------CCAAGTGCCACTGTG- 3' KIAA1666 hsa-miR-1207-5p beg:30 end:50 pic:3' GGGGAGGGTCGGAGGGACGGT 5'& |. ||| | |||||||| &5' CTGCTCA----CACCCTGCCA 3' KIAA1666 hsa-miR-3191 beg:142 end:161 pic:3' GACAGACCGGTCGATGCAGGGGT 5'& | || .||||||| &5' ------GTCCTTAAGCGTCCCC- 3' KIAA1666 hsa-miR-432 beg:104 end:121 pic:3' GGTGGGTTAC-TGGATGAGGTTCT 5'& | |. |.||||||| &5' ---------GCATGTGCTCCAAG- 3' KIAA1666 hsa-miR-342-5p beg:71 end:90 pic:3' AGTTAGTGTCTATCGTGGGGA 5'& ||||| ||||||||| &5' ----TCACACC-AGCACCCCT 3' KIAA1666 hiv1-miR-TAR-3p beg:39 end:54 pic:3' ACCCAAGGGATCAATCGGTCTCT 5'& |||| |||||||. &5' ------CCCT-----GCCAGAGG 3' KIAA1666 hsa-miR-524-3p beg:276 end:293 pic:3' TGAGGTTTCC-CTTCGCGGAAG 5'& || ||||||||||. &5' --------GGAGAAGCGCCTTT 3' KIAA1666 hsa-miR-525-3p beg:276 end:293 pic:3' GCGAGATTTCC-CTTCGCGGAAG 5'& || ||||||||||. &5' ---------GGAGAAGCGCCTTT 3' KIAA1666 hiv1-miR-N367 beg:52 end:77 pic:3' AACTTCGTG-GTAGGTTTCC-AGTCA 5'& |||||| |.|.||.| ||| &5' --GAAGCAAGCGTTCAGACCCTCA-- 3' KIAA1666 hsa-let-7gstar beg:10 end:34 pic:3' CGT-TCCGTCACCGGACA-TGTC 5'& || |||.|||||||| .| &5' GCCCAGGTAGTGGCCTCTGGC-- 3' KIAA1666 hsa-miR-103-2star beg:265 end:287 pic:3' GTTCCGT-CGTGACATTTCTTCGA 5'& |||| |.|. ..|||||| &5' ---GGCAGGTATAC-GGAGAAGC- 3' KIAA1666 hsa-miR-103-2star beg:43 end:60 pic:3' GTTCCGTCGTGACATTTCTTCGA 5'& || | | .|||||| &5' -------GC-CAGAGGAGAAGC- 3' KIAA1666 hsa-miR-1265 beg:358 end:380 pic:3' TTGTTGTGAACTGGTGTAGGAC 5'& ||| | | |.|||||.| &5' --CAAGAAAAGTCTACATCTT- 3' KIAA1666 hsa-miR-1268 beg:69 end:89 pic:3' GGGG-GTGGTGGTGCGGGC 5'& ||.| ||||| ||| ||| &5' CCTCACACCAGCAC-CCC- 3' KIAA1666 hsa-miR-1282 beg:43 end:65 pic:3' TTC-GTCTTTTTC-CGTTTGCT 5'& | ||||..|. ||||.|| &5' --GCCAGAGGAGAAGCAAGCG- 3' KIAA1666 hsa-miR-1285 beg:3 end:19 pic:3' TCCAGAGTGAAACAACGGGTCT 5'& ||. ||||||||. &5' ------CATCC--TTGCCCAGG 3' KIAA1666 hsa-miR-1288 beg:133 end:149 pic:3' AGAGGTCTAGTCCCGTCAGGT 5'& | ||| ||.||||| &5' ----CTGAT---GGTAGTCC- 3' KIAA1666 hsa-miR-1296 beg:156 end:171 pic:3' CCTCTACCTCGGTCCCGGGATT 5'& || |||.||.| &5' ----------CCTAGGCTCTGA 3' KIAA1666 hsa-miR-1297 beg:184 end:201 pic:3' GTGGACTTAATGAACTT 5'& .|||||.|||.||| &5' -GCCTGAGTTATTTG-- 3' KIAA1666 hsa-miR-135a beg:227 end:247 pic:3' AGTGTATC-CTTATTTTTCGGTAT 5'& || | |.|.||||||| &5' ------AGAGTCTGAGAAGCCAT- 3' KIAA1666 hsa-miR-135b beg:227 end:247 pic:3' AGTGTATC-CTTACTTTTCGGTAT 5'& || | |||.||||||| &5' ------AGAGTCTGAGAAGCCAT- 3' KIAA1666 hsa-miR-140-3p beg:302 end:322 pic:3' GGCAC-CAAGATGGGACACCAT 5'& .||| |||.| |.||| || &5' -TGTGTGTTTT-CTCTG-GG-- 3' KIAA1666 hsa-miR-141star beg:306 end:326 pic:3' AGGTTGTGACAT----GACCTTCTAC 5'& ||| ||||.||.| &5' --------TGTTTTCTCTGGGAGGT- 3' KIAA1666 hsa-miR-143 beg:360 end:381 pic:3' CTCGATGTCACGAAGTAGAGT 5'& || ||| || |||||.| &5' -AGAAA-AGT-CTACATCTTA 3' KIAA1666 hsa-miR-148bstar beg:161 end:185 pic:3' CG-GACTCACATATTGTCTTGAA 5'& || |||| .||.|||.|||| &5' GCTCTGAAA--GTAGCAGGACTT 3' KIAA1666 hsa-miR-1908 beg:29 end:49 pic:3' CTGGTTAGCGGCAGGGGCGGC 5'& |.|. || | |||.||| &5' GGCTGCTCACA--CCCTGCC- 3' KIAA1666 hsa-miR-1972 beg:117 end:140 pic:3' ACTCGGTGACACGGACCGGACT 5'& | |||||||||.. |||| &5' -GTGCCACTGTGTTAAA-CTGA 3' KIAA1666 hsa-miR-200b beg:3 end:24 pic:3' AGTAGTAAT-GGTCCGTCATAAT 5'& |||| ||. |||||.|||. &5' -CATCCTTGCCCAGGTAGTG--- 3' KIAA1666 hsa-miR-203 beg:230 end:251 pic:3' GATCAC-CAGGA--TTT-GTAAAGTG 5'& | |||. ||. ||||||| &5' -----GAGTCTGAGAAGCCATTTCA- 3' KIAA1666 hsa-miR-223 beg:126 end:141 pic:3' ACCCCATAAACTGTTTGACTGT 5'& || .|||||||. &5' ---------TGTTAAACTGAT- 3' KIAA1666 hsa-miR-2909 beg:160 end:171 pic:3' GGTTCTCTACAACCGGGATTG 5'& |||.||.| &5' ------------GGCTCTGA- 3' KIAA1666 hsa-miR-29b-2star beg:224 end:246 pic:3' GATTCGGTGGTACACTTTGGTC 5'& ||.|| .| || |||.||| &5' CTGAGAG-TC-TGAGAAGCCA- 3' KIAA1666 hsa-miR-3119 beg:227 end:246 pic:3' CGGTAGTTTCAA--TTTTCGGT 5'& |.||| |.|||||| &5' ------AGAGTCTGAGAAGCCA 3' KIAA1666 hsa-miR-3119 beg:354 end:372 pic:3' CGGTAGTTTCAATTTTCGGT 5'& |.| ||||. |||||.| &5' GTC-TCAAG---AAAAGTC- 3' KIAA1666 hsa-miR-3127 beg:213 end:231 pic:3' GAAGGGTAAGGTGTTCGGGACTA 5'& || ||| |||||| &5' -----CAAGCCAAC--CCCTGA- 3' KIAA1666 hsa-miR-3128 beg:31 end:52 pic:3' TACTCTCAAAAAATGA-------ACGGTCT 5'& |.|| ||||||| &5' ------------TGCTCACACCCTGCCAGA 3' KIAA1666 hsa-miR-3140 beg:186 end:208 pic:3' TGATGGACT---TAAGGGTTTTCGA 5'& .||||| |||. ||||||| &5' ---GCCTGAGTTATTTGCAAAAGC- 3' KIAA1666 hsa-miR-3144-3p beg:260 end:278 pic:3' ATTTCTCTGGC-TTGTCCATATA 5'& ||. ..|||||||| &5' -------ACTATGGCAGGTATA- 3' KIAA1666 hsa-miR-3180-5p beg:301 end:324 pic:3' GCTGCACCCCGCCTCGCAGACCTTC 5'& |.||| |. |||||.|| &5' --ATGTGT-GTTTTC--TCTGGGAG 3' KIAA1666 hsa-miR-3199 beg:133 end:151 pic:3' TTGAAAGAGGATT-CCGTCAGGGA 5'& ||.| ||.|||||.| &5' ---------CTGATGGTAGTCCTT 3' KIAA1666 hsa-miR-365star beg:339 end:362 pic:3' TGTCGACGGGGA---CTTTCAGGGA 5'& .||||.. |||||||.| &5' ----TTGCCTTGTACGAAAGTCTC- 3' KIAA1666 hsa-miR-365star beg:215 end:237 pic:3' TGTCGAC-GGGGACTTTCAGGGA 5'& ||| |||||||.||||. &5' --AGCCAACCCCTGAGAGTCT-- 3' KIAA1666 hsa-miR-367star beg:161 end:180 pic:3' TCTCAACGTATAA-TCGTTGTCA 5'& || ||.|.||| &5' ------GCTCTGAAAGTAGCAG- 3' KIAA1666 hsa-miR-376astar beg:216 end:238 pic:3' ATGAGTATCTTCCTCTTAGATG 5'& .| || ||||.|||. &5' -GC-CAACCCCTGAGAGTCTG- 3' KIAA1666 hsa-miR-384 beg:313 end:324 pic:3' ATACTTGTTAAAGATCCTTA 5'& |||.|||. &5' -----------TCTGGGAG- 3' KIAA1666 hsa-miR-4252 beg:9 end:28 pic:3' ACCACGACTGAGTCACCGG 5'& ||| .||||||| &5' ---TGCCCAGGTAGTGGCC 3' KIAA1666 hsa-miR-4277 beg:117 end:139 pic:3' CACA-TGACACGAGTCTTGACG 5'& ||| ||||||.| ||||| &5' GTGCCACTGTGTTA--AACTG- 3' KIAA1666 hsa-miR-4300 beg:138 end:160 pic:3' CTTCATCAGG---TCG-AGGGT 5'& .||||||| ||| |||| &5' --GGTAGTCCTTAAGCGTCCC- 3' KIAA1666 hsa-miR-431 beg:161 end:183 pic:3' ACGT-ACTGCCGGACGTTCTGT 5'& || ||| |. |||.||| &5' -GCTCTGAAAGTA-GCAGGAC- 3' KIAA1666 hsa-miR-4318 beg:103 end:123 pic:3' TCGTACATG-GGTGTCAC 5'& |||||||.| ||| |||| &5' AGCATGTGCTCCA-AGTG 3' KIAA1666 hsa-miR-4327 beg:64 end:84 pic:3' GGTCAGGGGGTACGTTCGG 5'& ||| |||.|| | ||| &5' -CAGACCCTCACACCAGC- 3' KIAA1666 hsa-miR-484 beg:176 end:193 pic:3' TAGCCCTCCCCTGAC-TCGGACT 5'& ||||| ||||||| &5' ---------GGACTTAAGCCTGA 3' KIAA1666 hsa-miR-491-5p beg:69 end:96 pic:3' GGAGTACCTTCCCA---AGGGGTGA 5'& ||||| || |||.||| &5' CCTCACACCAGCACCCCTCCTCAC- 3' KIAA1666 hsa-miR-510 beg:173 end:195 pic:3' CACTAACGG--TGAGA--GGACTCAT 5'& || |||. ||||||| &5' ------GCAGGACTTAAGCCTGAGT- 3' KIAA1666 hsa-miR-516a-3p beg:39 end:61 pic:3' TGGGA-GACTTTC-CTTCGT 5'& ||||| | .|.| |||||| &5' ACCCTGCCAGAGGAGAAGCA 3' KIAA1666 hsa-miR-516bstar beg:39 end:61 pic:3' TGGGA-GACTTTC-CTTCGT 5'& ||||| | .|.| |||||| &5' ACCCTGCCAGAGGAGAAGCA 3' KIAA1666 hsa-miR-520a-5p beg:305 end:322 pic:3' TCTTTCATGAAGGGAGACCTC 5'& ||. || ||||||. &5' -----GTG-TTTTCTCTGGG- 3' KIAA1666 hsa-miR-522 beg:229 end:249 pic:3' TGTGAGATTTCCCTTGGTAAAA 5'& | |||.|. |.|||||| &5' --AGTCTGAGA--AGCCATTT- 3' KIAA1666 hsa-miR-525-5p beg:303 end:322 pic:3' TCTTTCACGT-AGGGAGACCTC 5'& |||.. | ||||||. &5' -----GTGTGTTTTCTCTGGG- 3' KIAA1666 hsa-miR-548s beg:284 end:304 pic:3' TTTTATTGACGTCAAA----ACCGGTA 5'& || |||||| &5' ---------GCCTTTTTCTGTGGCCA- 3' KIAA1666 hsa-miR-576-3p beg:355 end:380 pic:3' CTAAG-GTTAAAA--AGGTGTAGAA 5'& || ||| ||.||||||| &5' ---TCTCAAGAAAAGTCTACATCTT 3' KIAA1666 hsa-miR-584 beg:86 end:104 pic:3' GAGTCAGGGTCCGTTTGGTATT 5'& |||. ||||||| &5' -----TCCTCACC--ACCATAA 3' KIAA1666 hsa-miR-588 beg:284 end:305 pic:3' CAAGATTGGGTA---ACACCGGTT 5'& .||. ||||||||| &5' ------GCCTTTTTCTGTGGCCAA 3' KIAA1666 hsa-miR-609 beg:78 end:88 pic:3' TCTCTACTCTCTTTGTGGGA 5'& |.||||| &5' ------------AGCACCC- 3' KIAA1666 hsa-miR-616 beg:61 end:84 pic:3' GACGAGTTTGGGAG-GTTACTGA 5'& |.|||.|||||| || .| &5' --GTTCAGACCCTCACACCAGC- 3' KIAA1666 hsa-miR-617 beg:307 end:327 pic:3' CGGTGGAAGTTTACCCTTCAGA 5'& . ||| |||||.||. &5' ---GTTTTCTC-TGGGAGGTT- 3' KIAA1666 hsa-miR-623 beg:32 end:55 pic:3' TGGGTTGTCGGGGACGTTC-CCTA 5'& .|.| ||| |||||| || ||| &5' GCTC-ACA--CCCTGCCAGAGGA- 3' KIAA1666 hsa-miR-624 beg:336 end:351 pic:3' TCCATTATGGTTATGGAACAC 5'& ||| |.|||||| &5' --------CCATTGCCTTGT- 3' KIAA1666 hsa-miR-635 beg:5 end:21 pic:3' CCTGTAACAAAGTCACGGGTTCA 5'& || ||||||.|| &5' ----------TCCTTGCCCAGGT 3' KIAA1666 hsa-miR-648 beg:75 end:96 pic:3' TGGTCAC-GGGACGTGTGAA 5'& ||||| |||| | ||| &5' ACCAGCACCCCTCCTCAC-- 3' KIAA1666 hsa-miR-651 beg:362 end:383 pic:3' GTTTTCAGTTCGAATAGGATTT 5'& ||||||| |||.|||| &5' -AAAAGTCTAC---ATCTTAAA 3' KIAA1666 hsa-miR-675star beg:265 end:281 pic:3' ACTCGCCACTCCCGTATGTC 5'& || ||.||||.| &5' -----GGCA--GGTATACGG 3' KIAA1666 hsa-miR-760 beg:86 end:109 pic:3' AGGGGTGTCTGGG--TC-TCGGC 5'& |||.||| ||| || ||| &5' TCCTCACC-ACCATAAGTAGC-- 3' KIAA1666 hsa-miR-876-3p beg:91 end:101 pic:3' ACTTAATGAAACATTTGGTGGT 5'& ||||||| &5' ---------------ACCACCA 3' KIAA1666 hsa-miR-924 beg:161 end:185 pic:3' CGTT-CTGTAG-TGTTCTGAGA 5'& || || .||.||||. &5' GCTCTGAAAGTAGCAGGACTT- 3' KIAA1666 hsa-miR-942 beg:263 end:286 pic:3' GTGTACCGGTTT--TGTCTCTTCT 5'& .||||| ||.|||||| &5' --TATGGCAGGTATACGGAGAAG- 3' KIAA1666 hsa-miR-942 beg:35 end:59 pic:3' GTGTAC--CGGTTTTGTCTCTTCT 5'& |||| ||||.| .|||||| &5' CACACCCTGCCAGA--GGAGAAG- 3' KIAA1666 hsv1-miR-H12 beg:344 end:364 pic:3' TTCGCAAGCGTGAAG-CAGGGTT 5'& |.|.|| |||.||| &5' ------TTGTACGAAAGTCTCAA 3' KIAA1666 hsv1-miR-H6-3p beg:316 end:326 pic:3' CCCTACCTTCCTGCCCTTCAC 5'& ||||.|| &5' -------------GGGAGGT- 3' KIAA1666 hsv2-miR-H6 beg:79 end:98 pic:3' CGTAGGGGAGCGGAAGGTAA 5'& ||| |||||| |. ||| &5' GCA-CCCCTC-CTCACCA-- 3' KIAA1666 kshv-miR-K12-10b beg:68 end:87 pic:3' CGGTGAGCCCCCCTGTTGTGGT 5'& || ||| ||.|||| &5' -CC-CTCACAC---CAGCACC- 3' KIAA1666 kshv-miR-K12-11star beg:292 end:303 pic:3' GGATCTTTACAAATTCGACACTGG 5'& |||||.|| &5' ----------------CTGTGGCC 3' KIAA1666 kshv-miR-K12-4-3p beg:296 end:315 pic:3' AGTCGATCCGGAGT--CATAAGAT 5'& |||| ||.||.| &5' -------GGCCAATGTGTGTTTT- 3' KIAA1666 mcv-miR-M1-3p beg:64 end:86 pic:3' AAGTCCTTCTCTTAGGTCGTGT 5'& |||| ||||||| &5' -TCAGACCCTCACACCAGCAC- 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region RIMBP3 High_conserved miR-503 chr22:20458180 7-mer-A1 24 CDS RIMBP3 High_conserved miR-503 chr22:20459472 7-mer-m8 4 CDS RIMBP3 High_conserved miR-551a chr22:20458931 7-mer-A1 7 CDS RIMBP3 High_conserved miR-7/7ab chr22:20456857 8-mer 7 CDS RIMBP3 High_conserved miR-133abc chr22:20458335 8-mer 7 CDS RIMBP3 High_conserved miR-9/9ab chr22:20456585 7-mer-A1 24 CDS RIMBP3 High_conserved miR-9/9ab chr22:20458333 7-mer-m8 7 CDS RIMBP3 High_conserved miR-96/507/1271 chr22:20457624 7-mer-m8 20 CDS RIMBP3 High_conserved miR-96/507/1271 chr22:20458575 7-mer-A1 4 CDS RIMBP3 High_conserved miR-96/507/1271 chr22:20459915 7-mer-m8 2 CDS RIMBP3 High_conserved miR-135ab/135a-5p chr22:20456135 7-mer-m8 2 3pUTR RIMBP3 High_conserved miR-138/138ab chr22:20456298 8-mer 11 3pUTR RIMBP3 High_conserved miR-138/138ab chr22:20457341 8-mer 13 CDS RIMBP3 High_conserved miR-139-5p chr22:20457444 7-mer-A1 7 CDS RIMBP3 High_conserved miR-139-5p chr22:20460852 7-mer-m8 7 CDS RIMBP3 High_conserved miR-141/200a chr22:20455976 7-mer-A1 0 3pUTR RIMBP3 High_conserved miR-145 chr22:20459768 7-mer-A1 7 CDS RIMBP3 High_conserved miR-150/5127 chr22:20459177 7-mer-A1 9 CDS RIMBP3 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr22:20458180 7-mer-A1 24 CDS RIMBP3 High_conserved miR-182 chr22:20458575 7-mer-A1 4 CDS RIMBP3 High_conserved let-7/98/4458/4500 chr22:20456801 8-mer 4 CDS RIMBP3 High_conserved miR-193/193b/193a-3p chr22:20461521 7-mer-m8 7 5pUTR RIMBP3 High_conserved miR-203 chr22:20456131 8-mer 9 3pUTR RIMBP3 High_conserved miR-204/204b/211 chr22:20456695 7-mer-A1 0 CDS RIMBP3 High_conserved miR-204/204b/211 chr22:20459064 8-mer 4 CDS RIMBP3 High_conserved miR-205/205ab chr22:20457160 7-mer-A1 2 CDS RIMBP3 High_conserved miR-214/761/3619-5p chr22:20456408 7-mer-m8 24 CDS RIMBP3 High_conserved miR-214/761/3619-5p chr22:20458810 7-mer-m8 9 CDS RIMBP3 High_conserved miR-22/22-3p chr22:20458305 7-mer-A1 7 CDS RIMBP3 High_conserved miR-22/22-3p chr22:20460951 7-mer-m8 29 CDS RIMBP3 High_conserved miR-22/22-3p chr22:20460984 7-mer-m8 27 CDS RIMBP3 High_conserved miR-22/22-3p chr22:20461029 7-mer-m8 27 CDS, 5pUTR RIMBP3 High_conserved miR-122/122a/1352 chr22:20455861 7-mer-A1 4 3pUTR RIMBP3 High_conserved miR-122/122a/1352 chr22:20456943 8-mer 7 CDS RIMBP3 High_conserved miR-24/24ab/24-3p chr22:20457090 7-mer-m8 2 CDS RIMBP3 High_conserved miR-29abcd chr22:20456625 7-mer-m8 4 CDS RIMBP3 High_conserved miR-29abcd chr22:20461585 8-mer 7 5pUTR RIMBP3 High_conserved miR-31 chr22:20460589 8-mer 7 CDS RIMBP3 High_conserved miR-31 chr22:20461484 7-mer-A1 7 5pUTR RIMBP3 High_conserved miR-103a/107/107ab chr22:20458105 7-mer-A1 16 CDS RIMBP3 High_conserved miR-103a/107/107ab chr22:20458381 7-mer-A1 9 CDS RIMBP3 High_conserved miR-103a/107/107ab chr22:20459317 7-mer-A1 24 CDS RIMBP3 High_conserved miR-103a/107/107ab chr22:20460937 7-mer-A1 18 CDS RIMBP3 High_conserved miR-338/338-3p chr22:20456407 7-mer-A1 20 CDS RIMBP3 High_conserved miR-338/338-3p chr22:20459587 7-mer-m8 7 CDS RIMBP3 High_conserved miR-338/338-3p chr22:20461222 7-mer-A1 20 CDS, 5pUTR RIMBP3 High_conserved miR-128/128ab chr22:20456251 7-mer-m8 13 3pUTR RIMBP3 High_conserved miR-128/128ab chr22:20456595 7-mer-m8 24 CDS RIMBP3 High_conserved miR-128/128ab chr22:20457018 7-mer-m8 4 CDS RIMBP3 High_conserved miR-128/128ab chr22:20457141 7-mer-m8 7 CDS RIMBP3 Medium_conserved miR-504/4725-5p chr22:20456933 7-mer-m8 18 CDS RIMBP3 Medium_conserved miR-504/4725-5p chr22:20461602 7-mer-A1 7 5pUTR RIMBP3 Medium_conserved miR-542-3p chr22:20457643 7-mer-m8 0 CDS RIMBP3 Medium_conserved miR-542-3p chr22:20458287 7-mer-A1 13 CDS RIMBP3 Medium_conserved miR-542-3p chr22:20459095 7-mer-A1 7 CDS RIMBP3 Medium_conserved miR-543 chr22:20455724 8-mer 13 3pUTR RIMBP3 Medium_conserved miR-544/544ab/544-3p chr22:20458293 7-mer-m8 16 CDS RIMBP3 Medium_conserved miR-615-3p chr22:20458822 7-mer-m8 4 CDS RIMBP3 Medium_conserved miR-758 chr22:20461598 7-mer-m8 16 5pUTR RIMBP3 Medium_conserved miR-873 chr22:20456419 7-mer-m8 4 CDS RIMBP3 Medium_conserved miR-874 chr22:20459656 8-mer 7 CDS RIMBP3 Medium_conserved miR-875-5p chr22:20456105 7-mer-A1 7 3pUTR RIMBP3 Medium_conserved miR-136 chr22:20456449 7-mer-A1 7 CDS RIMBP3 Medium_conserved miR-136 chr22:20457940 7-mer-m8 24 CDS RIMBP3 Medium_conserved miR-149 chr22:20460233 7-mer-m8 13 CDS RIMBP3 Medium_conserved miR-185/882/3473/4306/4644 chr22:20458355 7-mer-A1 4 CDS RIMBP3 Medium_conserved miR-185/882/3473/4306/4644 chr22:20460464 7-mer-A1 7 CDS RIMBP3 Medium_conserved miR-186 chr22:20457560 7-mer-m8 7 CDS RIMBP3 Medium_conserved miR-197 chr22:20457786 7-mer-m8 13 CDS RIMBP3 Medium_conserved miR-197 chr22:20460868 7-mer-A1 20 CDS RIMBP3 Medium_conserved miR-202-3p chr22:20456801 7-mer-A1 4 CDS RIMBP3 Medium_conserved miR-290-5p/292-5p/371-5p/293 chr22:20461516 7-mer-m8 9 5pUTR RIMBP3 Medium_conserved miR-296-3p chr22:20457605 7-mer-m8 7 CDS RIMBP3 Medium_conserved miR-326/330/330-5p chr22:20457722 7-mer-A1 18 CDS RIMBP3 Medium_conserved miR-328a/328b-3p chr22:20456950 7-mer-A1 2 CDS RIMBP3 Medium_conserved miR-335/335-5p chr22:20460591 7-mer-m8 7 CDS RIMBP3 Medium_conserved miR-339b/339-5p/3586-5p chr22:20458891 8-mer 2 CDS RIMBP3 Medium_conserved miR-346 chr22:20460068 7-mer-m8 7 CDS RIMBP3 Medium_conserved miR-346 chr22:20460771 7-mer-m8 7 CDS RIMBP3 Medium_conserved miR-361-5p chr22:20456119 7-mer-A1 7 3pUTR RIMBP3 Medium_conserved miR-361-5p chr22:20460179 7-mer-A1 7 CDS RIMBP3 Medium_conserved miR-370 chr22:20456201 7-mer-A1 22 3pUTR RIMBP3 Medium_conserved miR-370 chr22:20457080 7-mer-m8 2 CDS RIMBP3 Medium_conserved miR-370 chr22:20457151 7-mer-A1 7 CDS RIMBP3 Medium_conserved miR-370 chr22:20459311 7-mer-m8 22 CDS RIMBP3 Medium_conserved miR-370 chr22:20459659 7-mer-m8 16 CDS RIMBP3 Medium_conserved miR-370 chr22:20461576 7-mer-A1 11 5pUTR RIMBP3 Medium_conserved miR-376abd/376b-3p chr22:20458668 7-mer-m8 29 CDS RIMBP3 Medium_conserved miR-377 chr22:20459250 7-mer-m8 9 CDS RIMBP3 Medium_conserved miR-378/422a/378bcdefhi chr22:20457935 7-mer-m8 9 CDS RIMBP3 Medium_conserved miR-378/422a/378bcdefhi chr22:20461497 7-mer-m8 4 5pUTR RIMBP3 Medium_conserved miR-125a-3p/1554 chr22:20458263 7-mer-m8 16 CDS RIMBP3 Medium_conserved miR-125a-3p/1554 chr22:20461757 7-mer-A1 9 5pUTR RIMBP3 Medium_conserved miR-125a-3p/1554 chr22:20461775 7-mer-A1 4 5pUTR RIMBP3 Medium_conserved miR-431 chr22:20458440 7-mer-A1 16 CDS RIMBP3 Medium_conserved miR-433 chr22:20456578 7-mer-m8 4 CDS RIMBP3 Medium_conserved miR-486-5p/3107 chr22:20459074 7-mer-A1 4 CDS RIMBP3 Medium_conserved miR-486-5p/3107 chr22:20461682 8-mer 2 5pUTR RIMBP3 Medium_conserved miR-491-5p chr22:20457086 7-mer-A1 4 CDS RIMBP3 Medium_conserved miR-491-5p chr22:20457611 7-mer-A1 11 CDS

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score RIMBP3 RAID00137910 hsa-miR-875-5p miRNA MIMAT0004922 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID00854781 hsa-miR-526b-5p miRNA MIMAT0002835 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID01562391 hsa-miR-342-5p miRNA MIMAT0004694 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID01862777 hsa-miR-4710 miRNA MIMAT0019815 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID01882654 hsa-miR-4279 miRNA MIMAT0016909 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID01908191 hsa-miR-3617-3p miRNA MIMAT0022966 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID01932685 hsa-miR-203a-3p miRNA MIMAT0000264 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID02087396 hsa-miR-138-5p miRNA MIMAT0000430 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID02126311 hsa-miR-135a-5p miRNA MIMAT0000428 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID02162953 hsa-miR-31-5p miRNA MIMAT0000089 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID02216521 hsa-miR-4701-5p miRNA MIMAT0019798 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID02940488 hsa-miR-588 miRNA MIMAT0003255 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID03468729 hsa-miR-6858-5p miRNA MIMAT0027616 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID03567207 hsa-miR-5693 miRNA MIMAT0022486 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID03588420 hsa-miR-135b-5p miRNA MIMAT0000758 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID03768366 hsa-miR-488-3p miRNA MIMAT0004763 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID03800630 hsa-miR-4455 miRNA MIMAT0018977 RIMBP3 mRNA 85376 Prediction 0.1828 RIMBP3 RAID04019223 hsa-miR-128-3p miRNA MIMAT0000424 RIMBP3 mRNA 85376 Prediction 0.1828