DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Snx9 ATTTA 1-1788 1825-1829;2034-2038;2098-2102;3025-3029 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.! Snx9 WWATTTAWW 1-1788 2096-2104 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.!

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT010449 mmu-miR-340-5p Mus musculus Snx9 66616 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004529 mmu-miR-125b* 66616 Snx9 uccaGGGUUCU-UGGACUGAACa || :||: ||||||||| ggaaCCAGAGGCUCCUGACUUGg 2 19 125 147 [mm9:17_random:375221-375243:+] 0.6950 157 7 -24.34 -0.3587 MIMAT0004537 mmu-miR-154* 66616 Snx9 uuauccaGUUGGCACA-UACUAa ||||:| || ||||| ggaccagCAACUG-GUGAUGAUg 2 16 163 184 [mm9:17_random:354571-354577,357446-357460:+] 0.5937 121 0 -13.70 -0.3867 MIMAT0004541 mmu-miR-188-3p 66616 Snx9 acguuugggacguaCACCCUc |||||| agaaagacgaacugGUGGGAg 2 8 85 105 [mm9:17_random:375181-375201:+] 0.7522 120 6 -19.25 -0.1523 MIMAT0004581 mmu-miR-34b-3p 66616 Snx9 cuacCGUCACCUCAAUCACUAa | | ||| | |||||| agacGAACUGGUGGGAGUGAUg 2 19 89 110 [mm9:17_random:375185-375206:+] 0.7522 126 6 -14.38 -0.1021 MIMAT0004583 mmu-miR-130b* 66616 Snx9 ucaucaCGUUGUCCCUUUCUCa |||| | |||||| cagcuaGCAAAACCCAAAGAGa 2 17 370 391 [mm9:17_random:360020-360041:+] 0.6628 124 6 -10.21 -0.1057 MIMAT0004583 mmu-miR-130b* 66616 Snx9 ucaUCACGUUGU-CCCUUUCUCa | || || | |||||||| aggAAUGGAAGACUGGAAAGAGg 2 20 55 77 [mm9:17_random:373591-373592,375153-375173:+] 0.5875 154 7 -14.52 -0.5412 MIMAT0004630 mmu-miR-26b* 66616 Snx9 cucGGUUCAUUACCUCUU-GUCc :|||| :|| |||| ||| acuUCAAG-GAUUCAGAACCAGc 2 20 230 251 [mm9:17_random:357506-357527:+] 0.6214 121 0 -12.18 -0.5307 MIMAT0004636 mmu-miR-93* 66616 Snx9 gcccuucacgaucgaGUCGUCa |||||| gaaagugaaguuuucCAGCAGu 2 8 12 33 [mm9:17_random:373548-373569:+] 0.7945 120 6 -18.80 -0.1830 MIMAT0000571 mmu-miR-331-3p 66616 Snx9 aagauccuauccggGUCCCCg |||||| acaacaaaggagagCAGGGGc 2 8 119 139 [mm9:17_random:345188-345208:+] 0.6472 120 6 -20.85 -0.1007 MIMAT0000578 mmu-miR-337-3p 66616 Snx9 uccguaguauaUCCUCGACUu | ||||||| gccuggaaacaAUGAGCUGAc 2 11 30 50 [mm9:17_random:342108-342128:+] 0.7563 142 7 -10.84 -1.0208 MIMAT0004669 mmu-miR-125b-3p 66616 Snx9 ucgaggguucucggaUUGGGCa |||||| aucaucacaguuacaAACCCGa 2 8 67 88 [mm9:17_random:342145-342165,345157-345157:+] 0.7017 120 6 -15.21 -0.1265 MIMAT0000706 mmu-miR-362-5p 66616 Snx9 uaaGUGUGGAUCCAAGGUUCCUAa | ||||| || ||||||| cucCUCACCUUACUU-CAAGGAUu 2 22 219 241 [mm9:17_random:357495-357517:+] 0.6214 159 7 -20.95 -0.6051 MIMAT0004781 mmu-miR-532-3p 66616 Snx9 acguucggaacccaCACCCUCc ||||||| agaaagacgaacugGUGGGAGu 2 9 85 106 [mm9:17_random:375181-375202:+] 0.7522 140 7 -15.29 -0.9976 MIMAT0003120 mmu-miR-483* 66616 Snx9 uuCUGCCCUCCCCUCCUC-ACu ||| || | | ||||| || auGAC-GGCGUGAAGGAGCUGc 2 20 41 61 [mm9:17_random:375696-375716:+] 0.7257 121 0 -16.90 -0.2566 MIMAT0003120 mmu-miR-483* 66616 Snx9 uuCUGCCCUCCCCUCCUCACu |||| || :|||||| aaGACGAACUGGUGGGAGUGa 2 20 88 108 [mm9:17_random:375184-375204:+] 0.7522 139 6 -24.03 -0.2668 MIMAT0003127 mmu-miR-484 66616 Snx9 uagcCCUCCCCUGACUCG-GACu || |||| |||| ||| ugacGGUGGGGCAGGAGCACUGg 2 19 62 84 [mm9:17_random:375717-375739:+] 0.7193 122 0 -27.74 -0.1455 MIMAT0003127 mmu-miR-484 66616 Snx9 uagcccuccccUGACUCGGACu :||||||||| acgacuuugcuGCUGAGCCUGg 2 12 14 35 [mm9:17_random:342092-342113:+] 0.7563 151 7 -21.49 -0.3988 MIMAT0003167 mmu-miR-540-3p 66616 Snx9 gguccuagcuggaGACUGGa |||||| uggaaacaaugagCUGACCg 2 8 33 52 [mm9:17_random:342111-342130:+] 0.7563 120 6 -13.02 -0.2170 MIMAT0003733 mmu-miR-665 66616 Snx9 ucccuggagUCGGAGGACCa | ::|||||| cccuuaacaAAUUUCCUGGa 2 12 311 330 [mm9:17_random:357587-357596,359971-359980:+] 0.6421 127 6 -16.39 -0.1882 MIMAT0003734 mmu-miR-667 66616 Snx9 gaacccgacccaccguCCACAGu |||||| ------------cgguGGUGUCa 2 8 1 11 [mm9:17_random:373537-373547:+] 0.7945 120 6 -15.29 -0.2274 MIMAT0004822 mmu-miR-770-5p 66616 Snx9 gcaccgggucugugCACCACGa ||||||: ------------cgGUGGUGUc 2 9 1 10 [mm9:17_random:373537-373546:+] 0.7945 124 0 -10.32 -0.1297 MIMAT0004188 mmu-miR-802 66616 Snx9 uuccUACUU-AGAAACAAUGACu ||||: | ||||||| aacaAUGAGCUGACCGUUACUGa 2 19 37 59 [mm9:17_random:342115-342137:+] 0.7563 145 7 -15.52 -0.9481 MIMAT0003736 mmu-miR-670 66616 Snx9 aaguggUGUAUGUGAGUC-CCUa || :|:||||| ||| gacggaACUAGCGCUCAGAGGAa 2 17 88 110 [mm9:17_random:354496-354518:+] 0.6597 120 0 -20.29 -0.6242 MIMAT0014815 mmu-miR-3099* 66616 Snx9 guucccgaccuUCCUUCGACc | ||||||| gugccuccuccAUGAAGCUGc 2 11 290 310 [mm9:17_random:357566-357586:+] 0.6214 142 7 -9.13 -0.4533 MIMAT0014815 mmu-miR-3099* 66616 Snx9 guUCCCGACCUUCCUUC-GACc | | |||:| |||| ||| ugACGAAUGGGAUGAAGACUGg 2 20 183 204 [mm9:17_random:357459-357480:+] 0.6214 123 0 -19.22 -0.2343 MIMAT0014815 mmu-miR-3099* 66616 Snx9 guUCCCGACCU---UCCUU-CGACc | | ||||| ||||| |||| ggAAGACUGGAAAGAGGAAGGCUGa 2 20 61 85 [mm9:17_random:375157-375181:+] 0.7522 126 0 -20.42 -1.1394 MIMAT0014816 mmu-miR-3099 66616 Snx9 agggGUUGGAGAGA-GA-UCGGAu |:||:|: || || ||||| uguaCGACUUUGCUGCUGAGCCUg 2 19 11 34 [mm9:17_random:342089-342112:+] 0.7563 125 0 -19.41 -0.7274 MIMAT0003896 mmu-miR-763 66616 Snx9 cgGUGACCAAG-AAGGGUCGACc || | ||| ||||||| uuCAAGGAUUCAGAACCAGCUGa 2 21 232 254 [mm9:17_random:357508-357530:+] 0.6214 143 7 -18.27 -0.8455 MIMAT0003741 mmu-miR-674* 66616 Snx9 aacaaGACUCUACCCU-CGACAc | || :|| || ||||| -----CAGAAGUGUGACGCUGUg 2 18 1 18 [mm9:17_random:375656-375673:+] 0.7257 121 0 -14.93 -0.2717 MIMAT0003452 mmu-miR-678 66616 Snx9 ggagGUCAGGAAC---GUGGCUCUg ||||:| || : |||||| ccagCAGUUCCUGAAUUUCCGAGAu 2 19 26 50 [mm9:17_random:373562-373586:+] 0.7945 125 6 -23.10 -0.1046 MIMAT0003455 mmu-miR-679 66616 Snx9 uggUUCUCAGUGG-AGUGUCAGg |:||| |:| |||||||: ugaAGGAGAAAUCAUCACAGUUa 2 20 57 79 [mm9:17_random:342135-342157:+] 0.7563 146 0 -20.25 -0.1400 MIMAT0003461 mmu-miR-683 66616 Snx9 cuCCUGUGUC-GAAUGUCGUCc | :| ||| ||||||| uaGCGCUCAGAGGAACAGCAGc 2 20 96 117 [mm9:17_random:354504-354525:+] 0.6597 142 7 -16.56 -0.3253 MIMAT0003461 mmu-miR-683 66616 Snx9 cuccugugucgaauGUCGUCc |||||| aaagugaaguuuucCAGCAGu 2 8 13 33 [mm9:17_random:373549-373569:+] 0.7945 120 6 -13.15 -0.1883 MIMAT0003465 mmu-miR-719 66616 Snx9 uuguaaaaagacaucGGCUCUa |||||| gcaguuccugaauuuCCGAGAu 2 8 29 50 [mm9:17_random:373565-373586:+] 0.7945 120 6 -14.88 -0.1036 MIMAT0003471 mmu-miR-692 66616 Snx9 cucacuccgcGAGUUUCUCUa | |||||||| gcuagcaaaaCCCAAAGAGAa 2 12 372 392 [mm9:17_random:360022-360042:+] 0.6628 147 7 -10.42 -0.8873 MIMAT0003492 mmu-miR-702 66616 Snx9 cucgccccaUUUCCCACCCgu || |||||| agaaagacgAACUGGUGGGag 3 13 85 105 [mm9:17_random:375181-375201:+] 0.7522 124 0 -13.22 -0.1264 MIMAT0003495 mmu-miR-705 66616 Snx9 acgGGUGGGGU---GGAGG-GUGg | |||||| ||||| ||| ggaCGACCCCAAGUCCUCCUCACc 2 18 204 227 [mm9:17_random:357480-357503:+] 0.6214 124 0 -30.24 -0.3172 MIMAT0003502 mmu-miR-712 66616 Snx9 ccaugGCGGGCCCACUUCCUc :| | | |||||||| auggaUGACGGCGUGAAGGAg 2 17 37 57 [mm9:17_random:375692-375712:+] 0.7257 152 7 -27.18 -0.1112 MIMAT0003502 mmu-miR-712 66616 Snx9 ccaUGGCGGGC--CCACUUCCUc :|:| ||| ||||||| ugaGCUGACCGUUACUGAAGGAg 2 19 42 64 [mm9:17_random:342120-342142:+] 0.7563 145 7 -22.79 -1.0260 MIMAT0003512 mmu-miR-450b-3p 66616 Snx9 uacGUACGUUUUACAAG-GGUUa ::|| ::|| |||| |||| cgcUGUGGGGAA-GUUCACCAAg 2 20 12 33 [mm9:17_random:375667-375688:+] 0.7257 121 0 -15.34 -0.2191 MIMAT0004846 mmu-miR-881 66616 Snx9 agauaagUCUUUUCU-GUGUCAa ||||| | |||||| cugaaggAGAAAUCAUCACAGUu 2 16 56 78 [mm9:17_random:342134-342156:+] 0.7563 123 6 -13.64 -0.8595 MIMAT0004849 mmu-miR-883a-3p 66616 Snx9 uaUGACUCUCGACA--ACGUCAAu | ||| ||:| | |||||| aaAGUGA-AGUUUUCCAGCAGUUc 2 21 13 35 [mm9:17_random:373549-373571:+] 0.7945 121 6 -10.04 -0.1510 MIMAT0004851 mmu-miR-883b-3p 66616 Snx9 uaugacucucuacaaCGUCAAu |||||| aagugaaguuuuccaGCAGUUc 2 8 14 35 [mm9:17_random:373550-373571:+] 0.7945 120 6 -8.44 -0.1510 MIMAT0005833 mmu-miR-669d 66616 Snx9 uguauaugUACGUGUGUGUUCa ||| | ||||||| --accagaAUGGA-ACACAAGa 2 15 1 19 [mm9:17:5930618-5930636:+] 0.5490 148 7 -11.79 -0.8699 MIMAT0007873 mmu-miR-1896 66616 Snx9 gaGGAGUGGG----UGGUAGUC-UCUc |||:|||| | :||||| ||| gcCCUUACCCAAGGAGUAUCAGAAGAu 2 21 99 125 [mm9:17_random:375754-375755,377212-377236:+] 0.7048 127 0 -26.49 -0.8282 MIMAT0007876 mmu-miR-1907 66616 Snx9 uggaggucuagGAGACGACGAg ||:||||||| gucauguacgaCUUUGCUGCUg 2 12 7 28 [mm9:17_random:342085-342106:+] 0.7563 151 7 -17.47 -0.3935 MIMAT0009398 mmu-miR-1934 66616 Snx9 ucucCUGCUUCGUCCCCUGGUCu |:| | || ||||||| cacaGGCCUACCA-AGGACCAGc 2 20 149 170 [mm9:17_random:354557-354577,357446-357446:+] 0.5451 145 7 -17.98 -0.2842 MIMAT0009423 mmu-miR-1952 66616 Snx9 guCUUCCUCCCACCUCu ||| | ||||||| ccGAAUGUUGGUGGAGg 2 16 85 101 [mm9:17_random:342163-342165,345157-345170:+] 0.7017 151 7 -16.93 -1.0240 MIMAT0009425 mmu-miR-1954 66616 Snx9 uuGUCCCAGAGUGAGACGUCa :|||| :|||||||| gaUAGGG-AAGGCUCUGCAGa 2 20 123 142 [mm9:17_random:377234-377253:+] 0.6967 149 7 -24.48 -0.4782 MIMAT0009426 mmu-miR-1955 66616 Snx9 uuUUCGACGUCAC-GUAG--GACCCUGa :| | |||| | || | ||||||| agGAACAGCAGCGCCAACAACUGGGACa 2 24 106 133 [mm9:17_random:354514-354541:+] 0.6597 157 7 -21.54 -0.7487 MIMAT0009426 mmu-miR-1955 66616 Snx9 uuuucgACGUCACGUAGGACCCUGa || : || | ||||||| gacgaaUGGGAUGAAGACUGGGACg 2 20 184 208 [mm9:17_random:357460-357484:+] 0.6214 151 7 -16.89 -0.4679 MIMAT0009426 mmu-miR-1955 66616 Snx9 uuuucgacgucACGUAGGACCCUGa || : ||||||| gcucccaaaccUGGGAACUGGGACa 2 15 37 61 [mm9:17_random:354445-354469:+] 0.6597 142 7 -19.76 -0.4479 MIMAT0009428 mmu-miR-1956 66616 Snx9 agGCGACUG--AGUCGGGACCUGa :| ||:| | | |||||||| ggUGGUGGCAAUGACCCCUGGACa 2 21 4 27 [mm9:17_random:354412-354435:+] 0.6597 155 7 -22.50 -0.2881 MIMAT0009434 mmu-miR-1961 66616 Snx9 aagauugAUGAUGGAGu | ||||||| ggguuuaUCCUACCUCu 2 11 428 444 [mm9:17_random:363458-363474:+] 0.6819 142 7 -11.25 -0.3948 MIMAT0009456 mmu-miR-1839-5p 66616 Snx9 guucuggaCAAGAUA-GAUGGAa | |:||| |||||| ccuaugugGGUUUAUCCUACCUc 2 15 421 443 [mm9:17_random:363451-363473:+] 0.6819 122 6 -13.38 -0.9155 MIMAT0009460 mmu-miR-1982.1 66616 Snx9 gacACCCUCUUGUAUCCCACUCu ||| | :| : ||| |||| gacUGGAAAGAGGAAGGCUGAGa 2 21 65 87 [mm9:17_random:375161-375183:+] 0.7522 128 0 -19.26 -0.1061 MIMAT0014853 mmu-miR-3072 66616 Snx9 ucuuccgaaggaCCUCCCCCGu | ||||||| gaaccagcugaaGCAGGGGGCa 2 11 244 265 [mm9:17_random:357520-357541:+] 0.6214 142 7 -20.38 -0.3128 MIMAT0015640 mmu-miR-3470a 66616 Snx9 ggucggACCAGA-UGUUUCACu |||| | | |||||| ---cggUGGUGUCAGAAAGUGa 2 16 1 19 [mm9:17_random:373537-373555:+] 0.7945 126 6 -14.93 -0.7364 MIMAT0000121 mmu-let-7g 66616 Snx9 uuGACAUGUUU-GAU--GAUGGAGu || |::::: :|| ||||||| ccCUAUGUGGGUUUAUCCUACCUCu 2 21 420 444 [mm9:17_random:363450-363474:+] 0.6819 146 7 -14.81 -0.4040 MIMAT0000122 mmu-let-7i 66616 Snx9 uugucguguuugAUGAUGGAGu | ||||||| uauguggguuuaUCCUACCUCu 2 11 423 444 [mm9:17_random:363453-363474:+] 0.6819 142 7 -13.57 -0.4071 MIMAT0000124 mmu-miR-15b 66616 Snx9 acAUUUGGUACU-ACACGACGAu | | :| || | ||||||| ggUCAUGUACGACUUUGCUGCUg 2 21 6 28 [mm9:17_random:342084-342106:+] 0.7563 147 7 -16.41 -0.3904 MIMAT0000126 mmu-miR-27b 66616 Snx9 cgUCUUGAAUCGGUGA-CACUu ||:|| ||| ||| |||| caAGGAC-CAGCAACUGGUGAu 2 20 160 180 [mm9:17_random:354568-354577,357446-357456:+] 0.5937 125 0 -14.93 -0.3596 MIMAT0000219 mmu-miR-24 66616 Snx9 gacaaGGACGACUUGACUCGGu ::||||| ||||||| acgacUUUGCUG--CUGAGCCu 2 18 14 33 [mm9:17_random:342092-342111:+] 0.7563 154 7 -21.55 -0.5732 MIMAT0000225 mmu-miR-195 66616 Snx9 cgGU-UAUAAAGACACGACGAu || :|| || ||||||| guCAUGUACGACUUUGCUGCUg 2 20 7 28 [mm9:17_random:342085-342106:+] 0.7563 150 7 -16.66 -0.3904 MIMAT0000237 mmu-miR-204 66616 Snx9 ucCGUAUCCUACUGUUUCC-CUu | | || | ||||||| || aaGGAAAGAACAACAAAGGAGAg 2 21 110 132 [mm9:17_random:345179-345201:+] 0.6472 124 0 -16.21 -0.5759 MIMAT0000238 mmu-miR-205 66616 Snx9 gucugaggccaccuuACUUCCu |||||| ugagcugaccguuacUGAAGGa 2 8 42 63 [mm9:17_random:342120-342141:+] 0.7563 120 6 -14.62 -0.2138 MIMAT0000383 mmu-let-7d 66616 Snx9 uuGAUACG-UUGGAU--GAUGGAGa |||||: ::::|| ||||||| ccCUAUGUGGGUUUAUCCUACCUCu 2 21 420 444 [mm9:17_random:363450-363474:+] 0.6819 158 7 -20.73 -0.4009 MIMAT0000521 mmu-let-7a 66616 Snx9 uuGAUAUG-UUGGAU--GAUGGAGu ||||:: ::::|| ||||||| ccCUAUGUGGGUUUAUCCUACCUCu 2 21 420 444 [mm9:17_random:363450-363474:+] 0.6819 154 7 -18.11 -0.4009 MIMAT0000522 mmu-let-7b 66616 Snx9 uuGGUGUG-UUGGAU--GAUGGAGu |:|::: ::::|| ||||||| ccCUAUGUGGGUUUAUCCUACCUCu 2 21 420 444 [mm9:17_random:363450-363474:+] 0.6819 146 7 -17.11 -0.4040 MIMAT0000523 mmu-let-7c 66616 Snx9 uuGGUAUG-UUGGAU--GAUGGAGu |:||:: ::::|| ||||||| ccCUAUGUGGGUUUAUCCUACCUCu 2 21 420 444 [mm9:17_random:363450-363474:+] 0.6819 150 7 -17.42 -0.4009 MIMAT0000524 mmu-let-7e 66616 Snx9 uuGAUAUGUU---GGAGGAUGGAGu ||||:::: : ||||||||| ccCUAUGUGGGUUUAUCCUACCUCu 2 21 420 444 [mm9:17_random:363450-363474:+] 0.6819 155 7 -21.47 -0.4009 MIMAT0000525 mmu-let-7f 66616 Snx9 uuGAUAUG-UUAGAU--GAUGGAGu ||||:: ::|:|| ||||||| ccCUAUGUGGGUUUAUCCUACCUCu 2 21 420 444 [mm9:17_random:363450-363474:+] 0.6819 158 7 -16.81 -0.4040 MIMAT0000526 mmu-miR-15a 66616 Snx9 guGUUUGGUA-AU----ACACGACGAu |::::||| || | ||||||| cuCGGGUCAUGUACGACUUUGCUGCUg 2 21 2 28 [mm9:17_random:342080-342106:+] 0.7563 146 7 -18.67 -0.3874 MIMAT0000527 mmu-miR-16 66616 Snx9 gcgguuaUAAAUGC----ACGACGAu || |||| ||||||| ucgggucAUGUACGACUUUGCUGCUg 2 16 3 28 [mm9:17_random:342081-342106:+] 0.7563 146 7 -19.40 -0.3904 MIMAT0000537 mmu-miR-27a 66616 Snx9 cgcCUUGAAUCGGUGA-CACUu |:|| ||| ||| |||| caaGGAC-CAGCAACUGGUGAu 2 19 160 180 [mm9:17_random:354568-354577,357446-357456:+] 0.5937 120 0 -13.17 -0.3596 MIMAT0000545 mmu-miR-98 66616 Snx9 uuGUUAUG-UUGAAU--GAUGGAGu | ||:: :::||| ||||||| ccCUAUGUGGGUUUAUCCUACCUCu 2 21 420 444 [mm9:17_random:363450-363474:+] 0.6819 150 7 -13.97 -0.4009 MIMAT0000548 mmu-miR-322 66616 Snx9 agguUUUGUACU-UAACGACGAc | ::| || |||||||| ggucAUGUACGACUUUGCUGCUg 2 19 6 28 [mm9:17_random:342084-342106:+] 0.7563 149 7 -19.70 -0.3935 MIMAT0000668 mmu-miR-211 66616 Snx9 ucCGUUUCCUACUGUUUCC-CUu | |||| | ||||||| || aaGGAAAGAACAACAAAGGAGAg 2 21 110 132 [mm9:17_random:345179-345201:+] 0.6472 132 0 -18.37 -0.5723 MIMAT0000668 mmu-miR-211 66616 Snx9 ucCGUUUCCUACUG---UUUC-CCUu | || ||| ||| |||| ||| aaGGAAUGGAAGACUGGAAAGAGGAa 2 21 54 79 [mm9:17_random:373590-373592,375153-375175:+] 0.5875 123 0 -18.10 -0.6730 MIMAT0004750 mmu-miR-425 66616 Snx9 aguugcccucaCUAGCACAGUaa |:| |||||| ----------cGGUGGUGUCAga 3 13 1 13 [mm9:17_random:373537-373549:+] 0.7945 128 0 -11.38 -0.4376 MIMAT0003112 mmu-miR-489 66616 Snx9 cgacgguauauaCACCACAGUaa ||||||||| ----------cgGUGGUGUCAga 3 12 1 13 [mm9:17_random:373537-373549:+] 0.7945 135 0 -16.12 -0.4540 MIMAT0003168 mmu-miR-543 66616 Snx9 uucuucacgUGGCGCUUACAAa ||| |||||||| caguuacaaACC-CGAAUGUUg 2 14 74 94 [mm9:17_random:342152-342165,345157-345163:+] 0.7017 151 7 -15.47 -0.3281 MIMAT0003453 mmu-miR-497 66616 Snx9 auguuugGUG-UCACACGACGAc :|| | | ||||||| ggucaugUACGACUUUGCUGCUg 2 16 6 28 [mm9:17_random:342084-342106:+] 0.7563 146 7 -17.61 -0.3844 MIMAT0004936 mmu-miR-873 66616 Snx9 uccucuGAGUG-UUCAAGGACg :| || || |||||| ugccccUUAACAAAUUUCCUGg 2 16 308 329 [mm9:17_random:357584-357596,359971-359979:+] 0.6421 122 6 -11.29 -0.1120 MIMAT0004936 mmu-miR-873 66616 Snx9 uccUCUGAGUGU--UCAAGGACg || :|: || |||||||| ugaAGUUUUCCAGCAGUUCCUGa 2 19 17 39 [mm9:17_random:373553-373575:+] 0.7945 153 7 -16.51 -1.2201

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G066634 Snx9 Mus musculus 66616

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Snx9 mmu-miR-669d beg:4 end:19 pic:3' TGTATATGTACGTGTGTGTTCA 5'& ||| | ||||||| &5' --------ATGGA-ACACAAG- 3' Snx9 mmu-miR-1224 beg:63 end:86 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& |||| |||||||. || ||. &5' CTCC-CCTCCCCGCCCCCCAT 3' Snx9 mmu-miR-146bstar beg:26 end:50 pic:3' TGGTCTTGACTCAG-----GGATCCCG 5'& ||| || || |||.|||| &5' ----GAAGTGCTTCATTTACCTGGGGC 3' Snx9 mmu-miR-1955 beg:27 end:50 pic:3' TTTTCGACGTCACGTA------GGACCCTGA 5'& ||||| ||||||.| &5' ---------AGTGCTTCATTTACCTGGGGC- 3' Snx9 mmu-miR-92astar beg:72 end:87 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& ||.|| |||||.| &5' ------CCGCC---CCCCATC- 3' Snx9 mmu-miR-92astar beg:62 end:80 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& || || |||||.|| &5' ------CCTCCCCTCCCCGCC- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Snx9 mmu-miR-140* 23 49 -AGGCACCA------AGAUGGGACACCAU |||| || |:||||: || CUCCGAAGUGCUUCAUUUACCUG--GGG- Snx9 mmu-miR-143 17 42 ACUCGAUG----UCACGAAGUAGAGU ||| ||||||||||:| AGAGAACUCCGAAGUGCUUCAUUUA- Snx9 mmu-miR-23a 41 59 CCUUUAGGGA-CCGUUACACUA- ||: ||||||| ||| -----ACCUGGGGCAAUGCGAUU Snx9 mmu-miR-23b 41 59 CCAUUAGGGA-CCGUUACACUA- ||: ||||||| ||| -----ACCUGGGGCAAUGCGAUU Snx9 mmu-miR-294 11 37 UGUGUGUUUUCC-----CUUCGUGAAA ||||||:|| ||||::||| -AACACAAGAGAACUCCGAAGUGCUUC Snx9 mmu-miR-324-3p 24 55 -GGU----CGUC----GUGGACCCCGUCACC ||: || :|||||||||| || UCCGAAGUGCUUCAUUUACCUGGGGCAAUGC Snx9 mmu-miR-324-5p 24 57 GUGGU--UACG--------GGAUCCCC-UACGC- ||: :||| |||:||| ||||| -UCCGAAGUGCUUCAUUUACCUGGGGCAAUGCGA Snx9 mmu-miR-331 22 51 AAGAUCCUAUC-CG--------GGUCCCCG- || || || || || ||||| -ACUCCGA-AGUGCUUCAUUUACCUGGGGCA Snx9 mmu-miR-423 26 51 GACUCCCCGGAGUC--UGG--CUCGA || | ||:||| ||| |:|| -CGAAGUGCUUCAUUUACCUGGGGCA Snx9 mmu-miR-488 17 49 AACUCU--------CACGAU---AAUAGACCC- |||| ||||| ||| ||||| -AGAGAACUCCGAAGUGCUUCAUUUACCUGGGG Snx9 mmu-miR-491 32 80 -GGAGUACCU---UCCC--------------A--------AGGGGUGA |:|||| :||| | |||||:| GCUUCAUUUACCUGGGGCAAUGCGAUUCAAUUCCCUCCCCUCCCCGCC Snx9 mmu-miR-665 27 48 AUUCCCUGGAGUCGGAGGACCA ||| :|:||| : ||||| GAAGU-GCUUCAUUUACCUGGG Snx9 mmu-miR-675-5p 42 81 UGACACCCG---------------GGAA---AGGCGUGGU ||| |||| ||| ||| |:|| CCUG-GGGCAAUGCGAUUCAAUUCCCUCCCCUCCCCGCCC Snx9 mmu-miR-705 68 88 ACGGGUGGGGUGGAGGGUGG- ||| ||||:|| ||||:| -CCCCUCCCCGCCCCCCAUCA Snx9 mmu-miR-709 64 84 AGGAGGACGGAGA--CGGAGG- ||||| |||| ||| || CCCUCC--CCUCCCCGCCCCCC Snx9 mmu-miR-744 68 80 CGACAAUCGGGAUCGGGGCGU |||| |||||| -------CCCCU--CCCCGCC Snx9 mmu-miR-762 61 83 CGAGACAGGGCCGGGGUCGGGG- :|| |||| |||| ||||| AUUCCCUCCCCUCCCC-GCCCCC Snx9 mmu-miR-140* 24 50 AGGCACCAAGAUG-----GGACACCau |||| || || | |||| || TCCGAAGTGCTTCATTTACCTGGGGca Snx9 mmu-miR-143 19 42 aCUCGAUG--UCACGAAGUAGAgu || || | ||||||||||:| aGAACTCCGAAGTGCTTCATTTac Snx9 mmu-miR-23a 35 57 ccuuuAGGGA--CCGUUACACUA | ||| ||||||| ||| tcattTACCTGGGGCAATGCGAT Snx9 mmu-miR-23b 35 57 ccauuAGGGA--CCGUUACACUA | ||| ||||||| ||| tcattTACCTGGGGCAATGCGAT Snx9 mmu-miR-294 10 36 ugUGUGUUUUC-----CCUUCGUGAAa ||||||:|| ||||::||| gaACACAAGAGAACTCCGAAGTGCTTc Snx9 mmu-miR-324-3p 33 54 ggucgucgUGGACCCCGUCACc |||||||||| || cttcatttACCTGGGGCAATGc Snx9 mmu-miR-324-5p 33 55 GUGGUUACGGGAUCCCC--UACGC | :|| | ||| |||| ||||| CTTCATTTACCT-GGGGCAATGCG Snx9 mmu-miR-331 29 49 aagauccuauccgGGUCCCCG || ||||| agtgcttcatttaCCTGGGGC Snx9 mmu-miR-423 25 50 GACUCCCCGGAGU--CUGG--CUCGa | || | ||:||| ||| |:|| CCGAAGTGCTTCATTTACCTGGGGCa Snx9 mmu-miR-488 25 47 aaCUCUCACGA--U-AAUAGACCC || |||||| | ||| ||||| ccGA-AGTGCTTCATTTACCTGGG Snx9 mmu-miR-491 58 79 ggaguaccuucccaAGGGGUGa |||||:| tcaattccctccccTCCCCGCc Snx9 mmu-miR-675-5p 61 82 ugacacccGGGAAAGGCGUGGu |||| |||| || attccctcCCCTCCCCGCCCCc Snx9 mmu-miR-705 67 86 ACGGGUGGGGUGGAGGGUGG | ||| ||||:|| ||||:| TCCCCTCCCCGCCCCCCATC Snx9 mmu-miR-744 61 79 cgacaaucGGGAUCGGGGCGu |||| |||||| attccctcCCCT--CCCCGCc

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Snx9 RAID00096159 mmu-miR-27a-3p miRNA MIMAT0000537 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID00481557 mmu-miR-873a-5p miRNA MIMAT0004936 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID00630662 mmu-let-7b-5p miRNA MIMAT0000522 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID00657898 mmu-miR-493-5p miRNA MIMAT0017276 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID00672191 mmu-miR-6540-5p miRNA MIMAT0025585 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID00729022 mmu-miR-3090-3p miRNA MIMAT0014902 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID00936798 mmu-miR-7116-3p miRNA MIMAT0028130 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID01086333 mmu-let-7d-5p miRNA MIMAT0000383 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID01118760 mmu-miR-322-5p miRNA MIMAT0000548 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID01219182 mmu-miR-495-3p miRNA MIMAT0003456 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID01252053 mmu-let-7e-5p miRNA MIMAT0000524 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID01282375 mmu-miR-425-5p miRNA MIMAT0004750 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID01307855 mmu-miR-15a-5p miRNA MIMAT0000526 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID01367884 mmu-miR-211-5p miRNA MIMAT0000668 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID01462702 mmu-miR-1249-5p miRNA MIMAT0014804 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID01574415 mmu-miR-7687-5p miRNA MIMAT0029902 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID01666182 mmu-miR-24-3p miRNA MIMAT0000219 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID01732855 mmu-let-7c-5p miRNA MIMAT0000523 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID01735013 mmu-miR-497a-5p miRNA MIMAT0003453 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID01837339 mmu-miR-340-5p miRNA MIMAT0004651 Snx9 mRNA 66616 NGS (Next Generation Sequencing) 0.5483 Snx9 RAID01872052 mmu-miR-124-3p miRNA MIMAT0000134 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID02061421 mmu-miR-154-3p miRNA MIMAT0004537 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID02361041 mmu-let-7f-5p miRNA MIMAT0000525 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID02491339 mmu-miR-204-5p miRNA MIMAT0000237 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID02494942 mmu-miR-543-3p miRNA MIMAT0003168 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID03124805 mmu-miR-98-5p miRNA MIMAT0000545 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID03298356 mmu-miR-6951-3p miRNA MIMAT0027803 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID03330265 mmu-let-7i-5p miRNA MIMAT0000122 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID03572148 mmu-miR-195a-5p miRNA MIMAT0000225 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID03584228 mmu-let-7a-5p miRNA MIMAT0000521 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID03599042 mmu-miR-205-5p miRNA MIMAT0000238 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID03759300 mmu-miR-16-5p miRNA MIMAT0000527 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID03798773 mmu-miR-27b-3p miRNA MIMAT0000126 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID03798776 mmu-let-7g-5p miRNA MIMAT0000121 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID03805964 mmu-miR-489-3p miRNA MIMAT0003112 Snx9 mRNA 66616 Prediction 0.1828 Snx9 RAID04045930 mmu-miR-15b-5p miRNA MIMAT0000124 Snx9 mRNA 66616 Prediction 0.1828