DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004578 mmu-miR-300* 12143 Blk uguuuccuauuggAGAGAAGUu |||||||| ---caaccaauggUCUCUUCAg 2 10 1 19 [mm9:14:63992210-63992228:-] 0.4339 145 7 -14.53 -0.1673 MIMAT0004617 mmu-miR-148a* 12143 Blk ucagCCUCACAGAGUCUUGAAa ||| ||| |:||||||| gcaaGGAUUGUGUUAGAACUUa 2 19 277 298 [mm9:14:63991931-63991952:-] 0.4959 170 7 -18.83 -0.7782 MIMAT0004630 mmu-miR-26b* 12143 Blk cucGGUUCAUU--ACCUCUU-GUCc |||:|||: || |||| ||| cuuCCAGGUAGGUUGCAGAAUCAGg 2 20 84 108 [mm9:14:63992121-63992145:-] 0.4515 130 0 -22.49 -0.2319 MIMAT0004634 mmu-miR-31* 12143 Blk cuACCGUUAUACAA--CCGUA-UCGu |||| ||| | ||||| ||| gaUGGCUUCAUGGUGAGGCAUGAGCu 2 22 155 180 [mm9:14:63992049-63992074:-] 0.5093 124 0 -20.85 -0.3411 MIMAT0000706 mmu-miR-362-5p 12143 Blk uaaguguggauccaagGUUCCUAa ||||||| uugaauguaaaaugagCAAGGAUu 2 9 262 285 [mm9:14:63991944-63991967:-] 0.4959 140 7 -11.26 -0.4867 MIMAT0002106 mmu-miR-465a-5p 12143 Blk agUGUAGUCACGGUAAGAU-UUAu || |::| |: ||||| ||| acACUUUGGGACUUUUCUAUAAUa 2 22 516 539 [mm9:14:63991690-63991713:-] 0.6029 125 0 -11.32 -0.8644 MIMAT0003167 mmu-miR-540-3p 12143 Blk gguccuagcuggAGACUGGa ||||||| ucccgaaaucagUCUGACCa 2 9 326 345 [mm9:14:63991884-63991903:-] 0.5062 140 7 -16.02 -0.5197 MIMAT0003734 mmu-miR-667 12143 Blk gaACCCGACCCACCGUCC-ACAGu ||| | || || |||| |||| gaUGGACAGGAUGUCAGGCUGUCa 2 22 352 375 [mm9:14:63991854-63991877:-] 0.5023 137 0 -21.36 -0.7832 MIMAT0015219 mmu-miR-3475 12143 Blk aagUUUGGUACAC-----GGAGGUCu :|||:||| | ||||||| ucaGAACUAUGGGUCAAUCCUCCAGg 2 19 453 478 [mm9:14:63991751-63991776:-] 0.4806 149 7 -22.99 -0.1408 MIMAT0015219 mmu-miR-3475 12143 Blk aaGUUUGGUACACGGAGGUCu :|:| | | | ||||||| guUAGAAC-U-UACCUCCAGu 2 20 288 306 [mm9:14:63991923-63991941:-] 0.4959 143 7 -15.73 -0.7580 MIMAT0003736 mmu-miR-670 12143 Blk aagugguguaUGUGAGUCCCUa | | ||||||| gguagguugcAGAAUCAGGGAa 2 13 90 111 [mm9:14:63992118-63992139:-] 0.4365 144 7 -14.82 -0.8260 MIMAT0004848 mmu-miR-883a-5p 12143 Blk caUUGACGAUGAAGAG-AGUCGu | || :| |||| ||||| ucACCUUUUCAGUCUCAUCAGCa 2 21 409 431 [mm9:14:63991798-63991820:-] 0.4794 120 0 -14.79 -0.6013 MIMAT0004871 mmu-miR-465b-5p 12143 Blk gucuAGUCGUGGUAAGAU-UUAu |::| ||: ||||| ||| cacuUUGGGACUUUUCUAUAAUa 2 19 517 539 [mm9:14:63991690-63991712:-] 0.6029 126 0 -9.70 -0.8609 MIMAT0004884 mmu-miR-466h 12143 Blk auGUGUGUUCGUGUACGUGUGu | ||: ::||||||||| uaCCCAUCCCUGCAUGCACACu 2 21 499 520 [mm9:14:63991709-63991730:-] 0.5322 156 7 -17.68 -0.3602 MIMAT0004933 mmu-miR-878-3p 12143 Blk agaugggucacaccaCAGUACg |||||| cuuuucuauaauaaaGUCAUGa 2 8 527 548 [mm9:14:63991681-63991702:-] 0.6029 120 6 -12.30 -0.1430 MIMAT0004938 mmu-miR-875-3p 12143 Blk guaucGGAGUCAUAAAAGUCc :|||| ||||||| auuucUCUCA-CCUUUUCAGu 2 17 402 421 [mm9:14:63991808-63991827:-] 0.4985 146 7 -11.15 -0.2175 MIMAT0005293 mmu-miR-467e 12143 Blk uguAUAUGUACGAGUGUGAAUa || |:|||:||||||||| gguUA-AUAUGUUCACACUUAg 2 20 58 78 [mm9:14:63992151-63992171:-] 0.4665 173 7 -21.36 -0.3085 MIMAT0005848 mmu-miR-466j 12143 Blk aauGUGUGUACG--UGUACGUGUGu :|| ||| | :||||||||| cccUACCCAUCCCUGCAUGCACACu 2 21 496 520 [mm9:14:63991709-63991733:-] 0.5322 163 7 -18.04 -0.3545 MIMAT0005855 mmu-miR-467h 12143 Blk uguAUAUGUACGUGUGUGAAUa || |:|||: |||||||| gguUA-AUAUGUUCACACUUAg 2 20 58 78 [mm9:14:63992151-63992171:-] 0.4665 165 7 -16.46 -0.3085 MIMAT0007872 mmu-miR-1906 12143 Blk ucgggACGGA--GUCCGACGACGu ||||| | | ||||||| gcaagUGCCUCCCUGUCUGCUGCu 2 18 429 452 [mm9:14:63991777-63991800:-] 0.4799 156 7 -24.45 -0.5325 MIMAT0007876 mmu-miR-1907 12143 Blk uggaGGUCUAGGAGACGACGAg | || | ||:||||||| uggcCAAGUUACUUUGCUGCUc 2 19 225 246 [mm9:14:63991983-63992004:-] 0.5002 162 7 -25.17 -0.5050 MIMAT0007876 mmu-miR-1907 12143 Blk uggaggucuaggAGACGACGAg ||||||||| agugccucccugUCUGCUGCUu 2 11 432 453 [mm9:14:63991776-63991797:-] 0.4799 150 7 -25.96 -0.2250 MIMAT0009398 mmu-miR-1934 12143 Blk ucuccugcUUCGUCCCCU-GGUCu |||:: |||| |||| ugcuucucAAGUGAGGGAGCCAGg 2 16 124 147 [mm9:14:63992082-63992105:-] 0.4775 123 0 -19.51 -0.1276 MIMAT0009404 mmu-miR-1940 12143 Blk uuGACGAGG---UGGAA--GAGUCAGGAGGUa |||||:| ||: | ||| ||||||| ugCUGCUUCAGAACUAUGGGUCAAUCCUCCAg 2 26 446 477 [mm9:14:63991752-63991783:-] 0.4806 163 7 -27.78 -0.1354 MIMAT0009408 mmu-miR-1943 12143 Blk agguccacgGGUCUAGGAGGGAa | || ||||||| ucucaucagCAAGUGCCUCCCUg 2 15 421 443 [mm9:14:63991786-63991808:-] 0.4861 146 7 -18.87 -0.2026 MIMAT0009408 mmu-miR-1943 12143 Blk aggucCAC-GGGUCUAGG-AGGGAa ||| ||| | || ||||| gcuguGUGCCCCCUACCCAUCCCUg 2 19 486 510 [mm9:14:63991719-63991743:-] 0.4616 121 0 -24.64 -0.1949 MIMAT0009431 mmu-miR-1958 12143 Blk ugaauGACGAAGGUGA-AAGGAu |||: || || ||||| cugcuCUGUGUCGUCUCUUCCUu 2 18 241 263 [mm9:14:63991966-63991988:-] 0.4981 121 0 -13.44 -0.4225 MIMAT0015640 mmu-miR-3470a 12143 Blk ggUCGGACCAGAUGUUUC-ACu |||| || |||||| || ggAGCCAGG-AGACAAAGAUGg 2 20 139 159 [mm9:14:63992070-63992090:-] 0.5185 121 0 -17.91 -0.1446 MIMAT0015641 mmu-miR-3470b 12143 Blk ggUCGGACCAG-AU---GUCUCACu || || ||| || ||||||| ucAGGCU-GUCAUAACCCAGAGUGc 2 20 365 388 [mm9:14:63991841-63991864:-] 0.5023 147 7 -20.52 -0.3327 MIMAT0000124 mmu-miR-15b 12143 Blk acauuuGGUACUACACGACGAu || || | ||||||| gugccuCCCUG-UCUGCUGCUu 2 17 433 453 [mm9:14:63991776-63991796:-] 0.4799 150 7 -15.46 -0.2190 MIMAT0000124 mmu-miR-15b 12143 Blk acAUUUGGU--ACU-ACACGACGAu | ::||| | | | ||||||| cuUUGGCCAAGUUACUUUGCUGCUc 2 21 222 246 [mm9:14:63991983-63992007:-] 0.5002 146 7 -13.18 -0.5155 MIMAT0000124 mmu-miR-15b 12143 Blk acaUUUGGUACUACAC-GACGAu :|| |||:|||| ||||| aggGAAGAAUGGUGUGCCUGCUu 2 20 106 128 [mm9:14:63992101-63992123:-] 0.4775 135 0 -20.28 -0.2374 MIMAT0000134 mmu-miR-124 12143 Blk ccGUAAGUGGCGCACGGAAu || | :|:|:||||||| uuCACUGGCUGUGUGCCUUu 2 19 206 225 [mm9:14:63992004-63992023:-] 0.5002 162 7 -22.13 -0.2879 MIMAT0000210 mmu-miR-181a 12143 Blk ugAGUGGCUGUCGCAACUUACAa ||::| | | |||||||| ugUCGUC-UCUUCCUUGAAUGUa 2 22 249 270 [mm9:14:63991959-63991980:-] 0.4981 151 7 -12.58 -1.0023 MIMAT0000211 mmu-miR-182 12143 Blk gccacACUCA-AGAUGGUAA-CGGUUu ||: | | |:|| || ||||| uucacUGGCUGUGUGCCUUUGGCCAAg 2 21 206 232 [mm9:14:63991997-63992023:-] 0.5002 123 0 -18.94 -0.4002 MIMAT0000219 mmu-miR-24 12143 Blk gacaagGACGACUUGACUCGGu || | : ||||||| ucagggCUCCCAGCCUGAGCCu 2 17 16 37 [mm9:14:63992192-63992213:-] 0.4246 144 7 -15.69 -0.2504 MIMAT0000225 mmu-miR-195 12143 Blk cgGUUAUAAAGACACGACGAu ||| :|| || ||||||| gcCAA-GUUACUUUGCUGCUc 2 20 227 246 [mm9:14:63991983-63992002:-] 0.5002 161 7 -18.73 -0.5016 MIMAT0000225 mmu-miR-195 12143 Blk cgguuauaaAGACACGACGAu | | ||||||| gugccucccUGUCUGCUGCUu 2 13 433 453 [mm9:14:63991776-63991796:-] 0.4799 144 7 -15.97 -0.2271 MIMAT0000225 mmu-miR-195 12143 Blk cggUUAUAAAGACAC-GACGAu || | | |||| ||||| gggAAGAAUGGUGUGCCUGCUu 2 19 107 128 [mm9:14:63992101-63992122:-] 0.4775 122 0 -12.62 -0.2395 MIMAT0000526 mmu-miR-15a 12143 Blk guguUUGGU--AAU-ACACGACGAu ::||| ||| | ||||||| cuuuGGCCAAGUUACUUUGCUGCUc 2 19 222 246 [mm9:14:63991983-63992007:-] 0.5002 152 7 -14.59 -0.5155 MIMAT0000526 mmu-miR-15a 12143 Blk guguuugguaAUACACGACGAu |:| ||||||| agugccucccUGUCUGCUGCUu 2 13 432 453 [mm9:14:63991776-63991797:-] 0.4799 148 7 -13.81 -0.2210 MIMAT0000526 mmu-miR-15a 12143 Blk gugUUUGGUAAUACAC-GACGAu :|| || :|||| ||||| aggGAAGAAUGGUGUGCCUGCUu 2 20 106 128 [mm9:14:63992101-63992123:-] 0.4775 127 0 -14.08 -0.2395 MIMAT0000527 mmu-miR-16 12143 Blk gcGGUUAUAAAUGCACGACGAu |||| :|| : ||||||| ggCCAA-GUUACUUUGCUGCUc 2 21 226 246 [mm9:14:63991983-63992003:-] 0.5002 154 7 -20.64 -0.5016 MIMAT0000527 mmu-miR-16 12143 Blk gcgguuauaaAUGCACGACGAu |:: ||||||| agugccucccUGUCUGCUGCUu 2 13 432 453 [mm9:14:63991776-63991797:-] 0.4799 144 7 -16.49 -0.2271 MIMAT0000528 mmu-miR-18a 12143 Blk gauagacGUGAUCUACGUG-GAAu | ||: |||||| ||| uacccauCCCUGCAUGCACACUUu 2 17 499 522 [mm9:14:63991707-63991730:-] 0.5322 124 0 -14.21 -0.2470 MIMAT0000539 mmu-miR-92a 12143 Blk guccggcccugUUCACGUUAu :|||||||| gucauaacccaGAGUGCAAUc 2 11 372 392 [mm9:14:63991837-63991857:-] 0.4985 146 7 -12.15 -0.4115 MIMAT0000548 mmu-miR-322 12143 Blk agGUUUUGUACUUAACGACGAc | ||:: | |||||||| ggCCAAGU-UACUUUGCUGCUc 2 21 226 246 [mm9:14:63991983-63992003:-] 0.5002 146 7 -17.32 -0.5085 MIMAT0000548 mmu-miR-322 12143 Blk agguuuuguacuuaACGACGAc ||||||| agugccucccugucUGCUGCUu 2 9 432 453 [mm9:14:63991776-63991797:-] 0.4799 140 7 -12.49 -0.2230 MIMAT0000548 mmu-miR-322 12143 Blk aggUUUUGUACUUAAC-GACGAc :||: |||: || ||||| aggGAAGAAUGGUGUGCCUGCUu 2 20 106 128 [mm9:14:63992101-63992123:-] 0.4775 123 0 -11.33 -0.2374 MIMAT0000559 mmu-miR-326 12143 Blk ugaccuccuucccGGGUCUCc ||||||| caggcugucauaaCCCAGAGu 2 9 366 386 [mm9:14:63991843-63991863:-] 0.5023 140 7 -15.08 -0.4968 MIMAT0004642 mmu-miR-330 12143 Blk cggauuCUGUGUCCGGGUCUCu | ||:| ||||||| caggcuGUCAUA-ACCCAGAGu 2 17 366 386 [mm9:14:63991843-63991863:-] 0.5023 146 7 -20.92 -0.4865 MIMAT0000652 mmu-miR-25 12143 Blk agucUGGCUCUGUUCACGUUAc ||| || |||||||| cauaACCCAG---AGUGCAAUc 2 19 374 392 [mm9:14:63991837-63991855:-] 0.4985 150 7 -12.86 -0.4052 MIMAT0000654 mmu-miR-32 12143 Blk acguugaaucaUUACACGUUAu |: ||||||| ugucauaacccAGAGUGCAAUc 2 12 371 392 [mm9:14:63991837-63991858:-] 0.5023 143 7 -10.17 -0.4215 MIMAT0000673 mmu-miR-181b 12143 Blk uggguggcugucguuACUUACAa ||||||| gugucgucucuuccuUGAAUGUa 2 9 248 270 [mm9:14:63991959-63991981:-] 0.4981 140 7 -12.83 -1.0023 MIMAT0000674 mmu-miR-181c 12143 Blk ugAGUGGCUGUCCAACUUACAa ||::| : |||||||| ugUCGUCUCUUCCUUGAAUGUa 2 21 249 270 [mm9:14:63991959-63991980:-] 0.4981 148 7 -11.81 -1.0052 MIMAT0000708 mmu-miR-363 12143 Blk augucuaccuauggCACGUUAa ||||||| ugucauaacccagaGUGCAAUc 2 9 371 392 [mm9:14:63991837-63991858:-] 0.5023 140 7 -9.58 -0.4279 MIMAT0000766 mmu-miR-335-5p 12143 Blk uguaaAAAGCAAUAACGAGA-ACu || | ||: |||||| || ccaagUUACUUUGCUGCUCUGUGu 2 19 228 251 [mm9:14:63991978-63992001:-] 0.5002 126 0 -10.42 -0.2356 MIMAT0001420 mmu-miR-433 12143 Blk uguggcuccucgggUAGUACUa :|||||| uuuucuauaauaaaGUCAUGAg 2 9 528 549 [mm9:14:63991680-63991701:-] 0.6029 124 6 -7.04 -0.2214 MIMAT0003169 mmu-miR-539 12143 Blk ugugUGGUUCCUA--UUAAAGAGg |:||: | | ||||||| ugcaAUCAGAGCUCCCAUUUCUCu 2 19 386 409 [mm9:14:63991820-63991843:-] 0.4985 145 7 -11.99 -0.1479 MIMAT0003181 mmu-miR-367 12143 Blk agUGGUA-ACGAUUUCACGUUAa ::||| | |:|||||||| cuGUCAUAACCCAGAGUGCAAUc 2 21 370 392 [mm9:14:63991837-63991859:-] 0.5023 155 7 -14.56 -0.4215 MIMAT0003450 mmu-miR-488 12143 Blk cuGGUUCUUUGUCGGAAAGUu || |: || ||||||| aaCCUCGGUCCA-CCUUUCAc 2 20 191 210 [mm9:14:63992019-63992038:-] 0.5002 145 7 -15.22 -0.1246 MIMAT0003453 mmu-miR-497 12143 Blk auGUUUGGUGUCACACGACGAc |||:::|| | ||||||| gcCAAGUUAC--UUUGCUGCUc 2 21 227 246 [mm9:14:63991983-63992002:-] 0.5002 157 7 -17.60 -0.5120 MIMAT0003453 mmu-miR-497 12143 Blk auguuuGGUGUCACACGACGAc :| | || ||||||| agugccUCCCUGUCUGCUGCUu 2 17 432 453 [mm9:14:63991776-63991797:-] 0.4799 152 7 -16.69 -0.2250 MIMAT0003453 mmu-miR-497 12143 Blk augUUUGGUGUCACAC-GACGAc :|| |::||||| ||||| aggGAAGAAUGGUGUGCCUGCUu 2 20 106 128 [mm9:14:63992101-63992123:-] 0.4775 131 0 -17.15 -0.2439 MIMAT0004324 mmu-miR-181d 12143 Blk uggguggcuguuguuACUUACAa ||||||| gugucgucucuuccuUGAAUGUa 2 9 248 270 [mm9:14:63991959-63991981:-] 0.4981 140 7 -12.66 -1.0023 MIMAT0004858 mmu-miR-18b 12143 Blk gauuGUCGUGAUCUACGUG-GAAu || | ||: |||||| ||| uaccCAUCCCUGCAUGCACACUUu 2 20 499 522 [mm9:14:63991707-63991730:-] 0.5322 131 0 -13.69 -0.2470 MIMAT0004899 mmu-miR-92b 12143 Blk ccuccggcccugCUCACGUUAu ||||||||| ugucauaacccaGAGUGCAAUc 2 11 371 392 [mm9:14:63991837-63991858:-] 0.5023 150 7 -14.46 -0.4184 MIMAT0004941 mmu-miR-544 12143 Blk cucGAACGAU--UUUUACGUCUUa ||| | : |:: ||||||| cuuCUUCCAGGUAGGUUGCAGAAu 2 20 81 104 [mm9:14:63992125-63992148:-] 0.4515 146 7 -13.19 -0.2793

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G002356 MO000029523 Blk Mus musculus 12143 8756667 0 0 R12020; MOUSE$BLK_01; Binding factors: nerf-isoform2 , Tel-2a , Tel-2b , Tel-2c //-70 -38 R17086; MOUSE$BLK_04; Binding factors: Pax-5 //-70 -38 R17095; MOUSE$BLK_05; Binding factors: NF-kappaB , p50 //-47 -28 R17046; MOUSE$BLK_03; Binding factors: AML-1 //-27 -13 R13338; MOUSE$BLK_02; Binding factors: COE1-long

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Blk mmu-miR-467e beg:60 end:78 pic:3' TGTATATGTACGAGTGTGAATA 5'& |.|||.||||||||| &5' ------ATATGTTCACACTTA- 3' Blk mmu-miR-467h beg:60 end:78 pic:3' TGTATATGTACGTGTGTGAATA 5'& |.|||. |||||||| &5' ------ATATGTTCACACTTA- 3' Blk mmu-miR-148astar beg:279 end:298 pic:3' TCAGCCTCACAGAGTCTTGAAA 5'& ||| ||| |.||||||| &5' ----GGATTGTGTTAGAACTT- 3' Blk mmu-miR-697 beg:348 end:366 pic:3' AGAGGTGTCCTGGTCCTACAA 5'& | |. ||| |||||||| &5' ---CGAT-GGA-CAGGATGT- 3' Blk mmu-miR-672 beg:178 end:197 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& | | || .|| ||||||| &5' ---CTCTCAAGGCA-CAACCTC- 3' Blk mmu-miR-362-5p beg:275 end:286 pic:3' TAAGTGTGGATCCAAGGTTCCTAA 5'& |||||||| &5' ----------------CAAGGATT 3' Blk mghv-miR-M1-1 beg:390 end:408 pic:3' TTTCCTTCATGCCGGTAAAGAT 5'& || .| |||||||| &5' ------AGAGCTCCCATTTCT- 3' Blk mghv-miR-M1-7-5p beg:189 end:208 pic:3' TCCAATGGCGTGGAGGTGGAAA 5'& ||| |. ||||||||| &5' -----ACCTCGG-TCCACCTTT 3' Blk mmu-miR-3475 beg:289 end:306 pic:3' AAGTTTGGTACACGGAGGTCT 5'& .|||. ||||||| &5' ---GAACTTA---CCTCCAG- 3' Blk mmu-miR-1943 beg:426 end:443 pic:3' AGGTCCACGGGTCTAGGAGGGAA 5'& || || ||||||| &5' -------GCA-AGTGCCTCCCT- 3' Blk mmu-miR-300star beg:2 end:19 pic:3' TGTTTCCTATTGGAGAGAAGTT 5'& ||| || ||||||||. &5' -CAATGG------TCTCTTCAG 3' Blk mmu-miR-149 beg:130 end:148 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& |||||. ||||||||. &5' ---AGTGAG-----GGAGCCAGG 3' Blk mmu-miR-92a beg:376 end:392 pic:3' GTCCGGCCCTGTTCACGTTAT 5'& || .|||||||| &5' ----CCCA---GAGTGCAAT- 3' Blk mmu-miR-92b beg:380 end:392 pic:3' CCTCCGGCCCTGCTCACGTTAT 5'& ||||||||| &5' ------------GAGTGCAAT- 3' Blk mcmv-miR-m108-1 beg:444 end:459 pic:3' GCTGTGCTCGGTGGCAGTCTTT 5'& || |. |||||| &5' --------GCTGCT-TCAGAA- 3' Blk mghv-miR-M1-3 beg:393 end:416 pic:3' TTCGC-GTTGAGGACGAGTGGAG 5'& .||| | |.|.|| |||||||. &5' GAGCTCCCATTTCT-CTCACCTT 3' Blk mmu-let-7e beg:426 end:456 pic:3' TTGATATGT---TGGAGG--------ATGGAGT 5'& .|| .||||| |.|.||| &5' ------GCAAGTGCCTCCCTGTCTGCTGCTTCA 3' Blk mmu-let-7g beg:438 end:456 pic:3' TTGACATGTTTGATGATGGAGT 5'& |||| ||.||.|.||| &5' --CTGT-----CTGCTGCTTCA 3' Blk mmu-miR-106b beg:440 end:461 pic:3' TAGACG-TGACAGTCGTGAAAT 5'& .||||| .|| |||| ||| &5' GTCTGCTGCT-TCAGAACT--- 3' Blk mmu-miR-1188 beg:190 end:212 pic:3' AGGA-CCGGGTTGGAGTGTGGT 5'& ||| ||.|| ||||. |||. &5' -CCTCGGTCC-ACCTTTCACT- 3' Blk mmu-miR-1188 beg:13 end:37 pic:3' AGGACCG--GGTTGGAGTGTGGT 5'& || ||| |||.||| .|| &5' TCAGGGCTCCCAGCCTGA-GCC- 3' Blk mmu-miR-122 beg:508 end:523 pic:3' GTTTGTGGTAACAGTGTGAGGT 5'& ||| ||||||.. &5' -------CATG--CACACTTT- 3' Blk mmu-miR-124 beg:205 end:225 pic:3' CCGTAAGTGGCGCACGGAAT 5'& || | .|.|.||||||| &5' --CACTGGCTGTGTGCCTT- 3' Blk mmu-miR-125a-5p beg:89 end:111 pic:3' AGTGTCCAATTTCCCAGAGTCCCT 5'& .|||||. || ||||||| &5' ---TAGGTTGCAGAA--TCAGGGA 3' Blk mmu-miR-125b-3p beg:174 end:198 pic:3' TCGAGGGTTCTCGGATTGG-GCA 5'& |||||.|||| || |||| || &5' AGCTCTCAAG-GCACAACCTCG- 3' Blk mmu-miR-145star beg:128 end:150 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& |||| .| ||||||. &5' CAAGTGAGGGAG--CCAGGAG- 3' Blk mmu-miR-151-3p beg:321 end:342 pic:3' GGAGTTCCTCGG------AGTCAGATC 5'& ||.| |||||||. &5' --------AGTCCCGAAATCAGTCTG- 3' Blk mmu-miR-15a beg:224 end:246 pic:3' GTGTTTGGT--AATAC-ACGACGAT 5'& ..||| ||| ||||||| &5' ----GGCCAAGTTACTTTGCTGCT- 3' Blk mmu-miR-15a beg:432 end:453 pic:3' GTGTTTGGTA--ATACACGACGAT 5'& .|| |.| ||||||| &5' -----GCCTCCCTGTCTGCTGCT- 3' Blk mmu-miR-15b beg:224 end:246 pic:3' ACATTTGGTACTAC---ACGACGAT 5'& ..||| | ||||||| &5' ----GGCCAAGTTACTTTGCTGCT- 3' Blk mmu-miR-15b beg:436 end:453 pic:3' ACATTTGGTACTACACGACGAT 5'& || || ||||||| &5' ------CCCTGTC-TGCTGCT- 3' Blk mmu-miR-16 beg:225 end:246 pic:3' GCGGTTATAAATGC-ACGACGAT 5'& ||||| |||| ||||||| &5' -GCCAAG--TTACTTTGCTGCT- 3' Blk mmu-miR-16 beg:432 end:453 pic:3' GCGGTTATAAATGCACGACGAT 5'& ||| |. ||||||| &5' -GCCTCCC--TGTCTGCTGCT- 3' Blk mmu-miR-1894-3p beg:242 end:265 pic:3' GAGGGAAGTGGGAGAGGGAACG 5'& |||. | .||||.||||| &5' CTCTGTGTCGTCTCTTCCTTG- 3' Blk mmu-miR-1907 beg:225 end:247 pic:3' TGGAGGTCTAG-GAGACGACGAG 5'& ||| |. ||.|||||||| &5' ----CCAAGTTACTTTGCTGCTC 3' Blk mmu-miR-1907 beg:432 end:454 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& .||||| . |||||||||. &5' GCCTCCC---TGTCTGCTGCTT 3' Blk mmu-miR-195 beg:224 end:246 pic:3' CGGTTATAAAGACACGACGAT 5'& ||||| .|| || ||||||| &5' GCCAA-GTTACTTTGCTGCT- 3' Blk mmu-miR-195 beg:432 end:453 pic:3' CGGTTATAAAGACACGACGAT 5'& ||| || ||||||| &5' GCCTCCCTGTC--TGCTGCT- 3' Blk mmu-miR-1957 beg:56 end:76 pic:3' CAG-TATACGAGATGGTGAC 5'& ||. |||||.|| |||| &5' GTTAATATGTTCA--CACT- 3' Blk mmu-miR-1959 beg:66 end:88 pic:3' GAG-GTGACTCGATGTAGGGG 5'& || |||| |||| | ||..| &5' -TCACACTTAGCT-CTTCTTC 3' Blk mmu-miR-1982star beg:9 end:29 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& |||..||||.| |||||. &5' -CTCTTCAGGGC--TCCCAG 3' Blk mmu-miR-210 beg:500 end:519 pic:3' AGTCGGCGACAGTGTGCGTGTC 5'& || || ||| ||.||||| &5' -CATCC-CTG---CATGCACA- 3' Blk mmu-miR-214 beg:431 end:451 pic:3' TGACGGACAGACACGGACGACA 5'& |||| || ||.|||||| &5' --TGCC--TCCCTGTCTGCTG- 3' Blk mmu-miR-218-2star beg:444 end:464 pic:3' GCGCCACGAACTGTCTTGGTAC 5'& || ||||| ||||||.||| &5' -GC--TGCTT--CAGAACTATG 3' Blk mmu-miR-24 beg:438 end:469 pic:3' GACA-AGGACGA---CTTG--ACTCGGT 5'& |||| | ||||| |||| ||.|.|| &5' CTGTCTGCTGCTTCAGAACTATGGGTCA 3' Blk mmu-miR-25 beg:370 end:392 pic:3' AGTC-TGGCTCTGTTCACGTTAC 5'& ||| ||| .|||||||| &5' TCATAACCCA---GAGTGCAAT- 3' Blk mmu-miR-27bstar beg:168 end:183 pic:3' CAAGTGGTTAGTCG-ATTCGAGA 5'& .|| |.|||||| &5' -----------GGCATGAGCTCT 3' Blk mmu-miR-29astar beg:318 end:339 pic:3' GACTTGT-GGTTTTCTTTAGTCA 5'& || || ||||||||| &5' --GATAGTCCC---GAAATCAGT 3' Blk mmu-miR-30c-1star beg:391 end:412 pic:3' CCTCATTTGTTGGG---AGAGGGTC 5'& .|.| ||| ||||.|| &5' -----GAGCT-CCCATTTCTCTCA- 3' Blk mmu-miR-30c-2star beg:391 end:412 pic:3' TCTCATTTGTCGG--AAGAGGGTC 5'& .|.| || |||||.|| &5' -----GAGCTCCCATTTCTCTCA- 3' Blk mmu-miR-30c-2star beg:73 end:91 pic:3' TCTCATTTGTCG-GAAGAGGGTC 5'& .||| |||||.|||| &5' --------TAGCTCTTCTTCCAG 3' Blk mmu-miR-322 beg:225 end:246 pic:3' AGGTTTTGTACTTAACGACGAC 5'& ||||. |||||||| &5' -CCAAGTTACT--TTGCTGCT- 3' Blk mmu-miR-322 beg:433 end:453 pic:3' AGGTTTTGTACTTAACGACGAC 5'& || | || ||||||| &5' -CCTC--CCTGTC-TGCTGCT- 3' Blk mmu-miR-326 beg:366 end:386 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& .||| ||||||| &5' GCTGTCATAA---CCCAGAG- 3' Blk mmu-miR-330 beg:365 end:386 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& | ||. ||.| ||||||| &5' GGCTGT--CATAA-CCCAGAG- 3' Blk mmu-miR-3470b beg:365 end:388 pic:3' GGTCGGACCAG-AT---GTCTCACT 5'& ||| || ||| || ||||||| &5' -CAGGCT-GTCATAACCCAGAGTG- 3' Blk mmu-miR-3473 beg:391 end:410 pic:3' CCGACTCG---GTAGAGAGGT 5'& |||| |||.||||. &5' ----GAGCTCCCATTTCTCT- 3' Blk mmu-miR-3474 beg:75 end:92 pic:3' CTTAGGTGCAGAGGAGGGTCCC 5'& .| |||.||.||||| &5' ------GC-TCTTCTTCCAGG- 3' Blk mmu-miR-367 beg:375 end:392 pic:3' AGTGGTAACGATTTCACGTTAA 5'& ||| | |.|||||||| &5' --ACC----C-AGAGTGCAAT- 3' Blk mmu-miR-370 beg:189 end:215 pic:3' TGGT-CCAAGGTGGGGTCGT-CCG 5'& ||| || ||||||.. ||| &5' ACCTCGG-TCCACCTTTCACTGGC 3' Blk mmu-miR-432 beg:461 end:479 pic:3' GACGGGTGACTAGAT--GAGGTTCT 5'& |.|| |||||.| &5' ---------GGTCAATCCTCCAGG- 3' Blk mmu-miR-432 beg:63 end:92 pic:3' GACGGGTGA----CTAGAT-GAGGTTCT 5'& ||..||| | ||| .||||.| &5' -TGTTCACACTTAGCTCTTCTTCCAGG- 3' Blk mmu-miR-484 beg:15 end:34 pic:3' TAGCCCTCCCCTGACTCGGACT 5'& |||| | ||||||| &5' ------AGGGCTCCCAGCCTGA 3' Blk mmu-miR-488 beg:189 end:210 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& ||| |. || ||||||| &5' -ACCTCGGTCCA-CCTTTCA- 3' Blk mmu-miR-493 beg:511 end:532 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& |||||| |.||||.||. &5' ----GCACACTTTGGGACTTTT- 3' Blk mmu-miR-497 beg:226 end:246 pic:3' ATGTTTGGTGTCACACGACGAC 5'& |||. || ||||||| &5' --CAAGTTACTT--TGCTGCT- 3' Blk mmu-miR-497 beg:432 end:453 pic:3' ATGTTTGGTGTCACACGACGAC 5'& |.| || | || ||||||| &5' TGCCT-CC-CTGTCTGCTGCT- 3' Blk mmu-miR-503 beg:431 end:453 pic:3' GACGTCATGACAAGGGCGACGAT 5'& ||| |||| |.|||||| &5' -TGCCTCCCTGT--CTGCTGCT- 3' Blk mmu-miR-503 beg:224 end:246 pic:3' GACG--TC-ATGACAAGGGCGACGAT 5'& || || |||| ..|||||| &5' --GCCAAGTTACT----TTGCTGCT- 3' Blk mmu-miR-511 beg:165 end:190 pic:3' ACTCACGT-CTCGTT--TTCCGTA 5'& |||| ||| |||| |||||| &5' TGAG-GCATGAGCTCTCAAGGCA- 3' Blk mmu-miR-540-3p beg:32 end:56 pic:3' GGTCCTAG-CTGGAGACTGGA 5'& || || | |||||||.| &5' CCTCCTTCTGGACTCTGACTT 3' Blk mmu-miR-540-3p beg:325 end:345 pic:3' GGTCCTAGCTGGAGACTGGA 5'& ||. ||| ||||||| &5' CCGAAATCAG--TCTGACC- 3' Blk mmu-miR-542-3p beg:355 end:378 pic:3' AAAGTCA-ATAGTTAGACAGTGT 5'& ||| |.|||. ||||||.| &5' ---CAGGATGTCAGGCTGTCATA 3' Blk mmu-miR-542-5p beg:303 end:323 pic:3' AGCACT-GTACTACTAGGGGCTC 5'& |.||| || || |||||| &5' TTGTGTTCA----GA-CCCCGA- 3' Blk mmu-miR-544 beg:87 end:105 pic:3' CTCGAACGATTTTTACGTCTTA 5'& | ||.. |||||||| &5' ------GGTAGGT-TGCAGAAT 3' Blk mmu-miR-666-5p beg:105 end:127 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& || |..| ||||||.||| &5' GGAAGA-ATGG-TGTGCCTGCT 3' Blk mmu-miR-670 beg:92 end:111 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& . .|| ||||||| &5' ---GTTGCAGAA--TCAGGGA- 3' Blk mmu-miR-694 beg:50 end:72 pic:3' GAAGTCC-GTTGTAAAAGTC 5'& ||| || .||.|| |||| &5' CTTTGGGTTAATATGTTCA- 3' Blk mmu-miR-709 beg:433 end:455 pic:3' AGGA-GGACGGA-GACGGAGG 5'& ||| ||||.|| ||||.|| &5' -CCTCCCTGTCTGCTGCTTC- 3' Blk mmu-miR-741 beg:391 end:409 pic:3' AGATGTATCTTACC-GTAGAGAGT 5'& |||. |||.|||| &5' -------AGAGCTCCCATTTCTC- 3' Blk mmu-miR-758 beg:333 end:354 pic:3' ATCAC-CTGGTCCAGTGTTT 5'& ||| |||||| .|.| &5' -AGTCTGACCAGTTAGCGA- 3' Blk mmu-miR-758 beg:134 end:155 pic:3' ATCACCT-GGTCCAGTGTTT 5'& || ||| ||||| ||||| &5' -AG-GGAGCCAGGAGACAAA 3' Blk mmu-miR-760 beg:376 end:399 pic:3' AGGGGTGTCTG---GGTCTCGGC 5'& |||| || .||||||. &5' --CCCAGAGTGCAATCAGAGCT- 3' Blk mmu-miR-761 beg:226 end:245 pic:3' ACACAGTCAAAGTGGGACGACG 5'& || |.||..|||||| &5' -----CAAG-TTACTTTGCTGC 3' Blk mmu-miR-762 beg:9 end:32 pic:3' CGAGACAGGGCCG-GGGTCGGGG 5'& |||| || ||| |||||||. &5' -CTCT-TCAGGGCTCCCAGCCT- 3' Blk mmu-miR-7a beg:69 end:90 pic:3' TGTTGTTTTAGTG-ATC----AGAAGGT 5'& ||| ||| ||||||| &5' ----------CACTTAGCTCTTCTTCCA 3' Blk mmu-miR-875-3p beg:404 end:421 pic:3' GTATCGGAGTCATAAAAGTCC 5'& .|||| ||||||| &5' -----TCTCACC-TTTTCAG- 3' Blk mmu-miR-879star beg:537 end:550 pic:3' GGCTTTCGAACTTCGGTATTCG 5'& |||.|||.|| &5' -----------AAGTCATGAG- 3' Blk mmu-miR-883b-5p beg:403 end:422 pic:3' ACTGACGATGGGTAAGAGTCAT 5'& || || || ||.||||| &5' ---CT-CTCACC-TTTTCAGT- 3' Blk mmu-miR-466h beg:507 end:520 pic:3' ATGTGTGTTCGTGTACGTGTGT 5'& .||||||||| &5' -----------GCATGCACAC- 3' Blk mmu-miR-466j beg:507 end:520 pic:3' AATGTGTGTACGTGTACGTGTGT 5'& .||||||||| &5' ------------GCATGCACAC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Blk RAID00066477 mmu-miR-15a-5p miRNA MIMAT0000526 Blk mRNA 12143 Prediction 0.1828 Blk RAID00283189 mmu-miR-181a-5p miRNA MIMAT0000210 Blk mRNA 12143 Prediction 0.1828 Blk RAID00296426 mmu-miR-15b-5p miRNA MIMAT0000124 Blk mRNA 12143 Prediction 0.1828 Blk RAID00400870 mmu-miR-544-3p miRNA MIMAT0004941 Blk mRNA 12143 Prediction 0.1828 Blk RAID00468619 mmu-miR-1906 miRNA MIMAT0007872 Blk mRNA 12143 Prediction 0.1828 Blk RAID00676093 mmu-miR-433-3p miRNA MIMAT0001420 Blk mRNA 12143 Prediction 0.1828 Blk RAID00700995 mmu-miR-181d-5p miRNA MIMAT0004324 Blk mRNA 12143 Prediction 0.1828 Blk RAID00937433 mmu-miR-32-5p miRNA MIMAT0000654 Blk mRNA 12143 Prediction 0.1828 Blk RAID01055209 mmu-miR-195a-5p miRNA MIMAT0000225 Blk mRNA 12143 Prediction 0.1828 Blk RAID01101300 mmu-miR-326-3p miRNA MIMAT0000559 Blk mRNA 12143 Prediction 0.1828 Blk RAID01168974 mmu-miR-18a-5p miRNA MIMAT0000528 Blk mRNA 12143 Prediction 0.1828 Blk RAID01256621 mmu-miR-497a-5p miRNA MIMAT0003453 Blk mRNA 12143 Prediction 0.1828 Blk RAID01357636 mmu-miR-335-5p miRNA MIMAT0000766 Blk mRNA 12143 Prediction 0.1828 Blk RAID01373458 mmu-miR-18b-5p miRNA MIMAT0004858 Blk mRNA 12143 Prediction 0.1828 Blk RAID01395585 mmu-miR-182-5p miRNA MIMAT0000211 Blk mRNA 12143 Prediction 0.1828 Blk RAID01753837 mmu-miR-488-3p miRNA MIMAT0003450 Blk mRNA 12143 Prediction 0.1828 Blk RAID01759729 mmu-miR-322-5p miRNA MIMAT0000548 Blk mRNA 12143 Prediction 0.1828 Blk RAID01813060 mmu-miR-330-5p miRNA MIMAT0004642 Blk mRNA 12143 Prediction 0.1828 Blk RAID02098307 mmu-miR-363-3p miRNA MIMAT0000708 Blk mRNA 12143 Prediction 0.1828 Blk RAID02192548 mmu-miR-181b-5p miRNA MIMAT0000673 Blk mRNA 12143 Prediction 0.1828 Blk RAID02292427 mmu-miR-3104-5p miRNA MIMAT0014939 Blk mRNA 12143 Prediction 0.1828 Blk RAID02381700 mmu-miR-873a-3p miRNA MIMAT0017279 Blk mRNA 12143 Prediction 0.1828 Blk RAID02626048 mmu-miR-539-5p miRNA MIMAT0003169 Blk mRNA 12143 Prediction 0.1828 Blk RAID03225051 mmu-miR-124-3p miRNA MIMAT0000134 Blk mRNA 12143 Prediction 0.1828 Blk RAID03244214 mmu-miR-92a-3p miRNA MIMAT0000539 Blk mRNA 12143 Prediction 0.1828 Blk RAID03382269 mmu-miR-92b-3p miRNA MIMAT0004899 Blk mRNA 12143 Prediction 0.1828 Blk RAID03793161 mmu-miR-181c-5p miRNA MIMAT0000674 Blk mRNA 12143 Prediction 0.1828 Blk RAID03794891 mmu-miR-367-3p miRNA MIMAT0003181 Blk mRNA 12143 Prediction 0.1828 Blk RAID03833595 mmu-miR-672-3p miRNA MIMAT0017241 Blk mRNA 12143 Prediction 0.1828 Blk RAID03888179 mmu-miR-24-3p miRNA MIMAT0000219 Blk mRNA 12143 Prediction 0.1828 Blk RAID03931512 mmu-miR-25-3p miRNA MIMAT0000652 Blk mRNA 12143 Prediction 0.1828 Blk RAID03960772 mmu-miR-16-5p miRNA MIMAT0000527 Blk mRNA 12143 Prediction 0.1828