DNA & RNA Element - miRNAMap |
Gene Name | Mature miRNA | Target Start | Target End | miRNA 3-5 | Alignment | Target 5-3 |
Ubb | mmu-miR-106a | 37 | 60 | -AUG-GACGUGACAAUC-GUGAAAC | ||| ||||||| ||| ||||| | UUACUCUGCACUC-UAGCCACUUG- |
Ubb | mmu-miR-141 | 5 | 32 | -GGUAGAAAU--GG----UCUGUCACAAU | | :||| || :|:||||| | UCGGUCUGCAUUCCCAGUGGGCAGUGA-- |
Ubb | mmu-miR-155 | 15 | 41 | -GGGGAUAGU-GUUA--AUCGUAAUU | :||| :| : ||:| |:|||||| | UUCCCAGUGGGCAGUGAUGGCAUUAC |
Ubb | mmu-miR-17-5p | 35 | 60 | -UGAUG-GACGUGACAUUCGUGAAAC | |:||| ||||||| ||: ||||| | CAUUACUCUGCACUCUAGCCACUUG- |
Ubb | mmu-miR-19a | 25 | 49 | AGUCAAAA-CGUAUCUAAACGUGU | |||| |||| ||||| | GCAGUGAUGGCAUUACUCUGCACU |
Ubb | mmu-miR-19b | 18 | 49 | AGUCAAAACGU----ACC-UAA----ACGUGU | |||| ||| ||| ||| ||||| | CCAGUGG-GCAGUGAUGGCAUUACUCUGCACU |
Ubb | mmu-miR-200b | 4 | 32 | CAGUA----GUAAUGG---UCCGUCAUAAU | ||: |||| || :||||||: | UUCGGUCUGCAUUCCCAGUGGGCAGUGA-- |
Ubb | mmu-miR-20a | 37 | 60 | GAUG-GACGUGAUAUUCGUGAAAU | ||| ||||||| ||: ||||| | UUACUCUGCACUCUAGCCACUUG- |
Ubb | mmu-miR-217 | 2 | 32 | -UAGGUCAGUC--AAGG---ACUACGUCAU- | ||:|:||| | |||| ||: |||||: | UAUUCGGUCUGCAUUCCCAGUGG-GCAGUGA |
Ubb | mmu-miR-24* | 7 | 29 | UGACUAUAGUCGA----GUCAUCCGUG | :|| || ||||:|||| | -----GGUCUGCAUUCCCAGUGGGCAG |
Ubb | mmu-miR-290 | 57 | 79 | UUUUUCACGGGGGUA---UCAAA-CUC | |||||| ||||| || | -----UUGCCCCAAUUUAAGUUUAGAA |
Ubb | mmu-miR-298 | 93 | 113 | CCUUCUUGUCGGGA-GGAGACGG- | ||:|||: ||||||:: | ----UAAUAGCUGAACCUCUGUUA |
Ubb | mmu-miR-301 | 31 | 50 | CGAAACUGUUAUGAUAACGUGAC | ||:|| |||| |||||| | ---AUGGCAUUACUC-UGCACUC |
Ubb | mmu-miR-301b | 27 | 50 | ACGAAACUGUUAUGGUAACGUGAC | |: ||:|| |||: |||||| | AGUGAUGGCAUUACUC-UGCACUC |
Ubb | mmu-miR-302c* | 95 | 116 | -GUCGUCCAUUGGGGUACAAUUU- | :||| ||||:| ||||||| | AUAGCUG--AACCUC-UGUUAAAA |
Ubb | mmu-miR-31 | 23 | 56 | GUCGAUACGGUCGU-----------AGAACGGA | :|| :|| :||| ||| ||| | GGGCAGUGAUGGCAUUACUCUGCACUCUAGCCA |
Ubb | mmu-miR-324-3p | 4 | 32 | -GGUCGU-CGU---GGAC-CCCGUCACC | :|:|: ||| || | |||||||| | UUCGGUCUGCAUUCCCAGUGGGCAGUGA |
Ubb | mmu-miR-326 | 6 | 26 | UGACCUCCUUCCCGGGUCUCC- | || ||||| || | --CGGUCUGCAUUCCCAGUGGG |
Ubb | mmu-miR-331 | 8 | 28 | AAGAUCCUAUCCGGGUC-CCCG- | |||: ||||| |||| | GUCUGCAUU---CCCAGUGGGCA |
Ubb | mmu-miR-339 | 11 | 33 | ACUCG--AGGACCUCCUGUCCCU- | || ||| | ||:||| || | --UGCAUUCCCAGUGGGCAGUGAU |
Ubb | mmu-miR-346 | 6 | 33 | UCUCCGUCCGUGAG-----CCCGUCUGU- | ||: |||:|| |||||| | | --CGGUCUGCAUUCCCAGUGGGCAGUGAU |
Ubb | mmu-miR-370 | 6 | 28 | UUGGUCCAAGGUG---GGGUCGUCCG- | || ||::| |||||::||| | ----CGG-UCUGCAUUCCCAGUGGGCA |
Ubb | mmu-miR-449b | 17 | 56 | -GGUCGAUCGUU--------------ACGUGA---CGGA | ||||: :|||: |||||| ||| | CCCAGUGGGCAGUGAUGGCAUUACUCUGCACUCUAGCCA |
Ubb | mmu-miR-666 | 39 | 65 | CCGAGA-GUG---UCGAC--ACGGGCGA | |||| ||| ||| ||||| | | -ACUCUGCACUCUAGCCACUUGCCC-CA |
Ubb | mmu-miR-674 | 9 | 32 | AUGUGGUGAGGGUAGA--GUCACG | | ||:||||| ||||| | -UCUGCAUUCCCAGUGGGCAGUGA |
Ubb | mmu-miR-675-3p | 21 | 42 | UGACUCGCCAAUCCCGU-AUGUC | ||:|| || |||| ||| | -GUGGGCAGUGAUGGCAUUACU- |
Ubb | mmu-miR-675-5p | 20 | 50 | UGACACCCGGG--------AA--AGGCGUGGU | |||||| || ||:||||: | --AGUGGGCAGUGAUGGCAUUACUCUGCACUC |
Ubb | mmu-miR-695 | 3 | 24 | -AAGUCAGUGGAUACGGGUUAGA | |||:||| | || ||||:| | AUUCGGUCUGC-AUUCCCAGUG- |
Ubb | mmu-miR-703 | 98 | 135 | AAGAAA-GGAAGAC--U--------------UCCAAAA- | || ||| ||| | ||||||| | -GCUGAACCU-CUGUUAAAAAAUGUUAAUAAAGGUUUUG |
Ubb | mmu-miR-707 | 20 | 43 | GCAUCCGUU-C-GCCGUACUGAC | ||:||||: | :||||| ||| | AGUGGGCAGUGAUGGCAUUACUC |
Ubb | mmu-miR-709 | 46 | 65 | AGGAGGACGGA-GACGGAGG- | |||: ||| :|||| || | -ACUCUAGCCACUUGCC-CCA |
Ubb | mmu-miR-742 | 16 | 37 | AAAUGGGUCG-----UACCACCGAAAG | |||||: :|| |||| | ---UCCCAGUGGGCAGUGAUGGCA--- |
Ubb | mmu-miR-744 | 49 | 65 | CGACAAUCGG-GAUCGGGGCGU | ||||| || ||||| | ----CUAGCCACUUGCCCCA-- |
Ubb | mmu-miR-759 | 42 | 55 | CAGUUUUAACAAACGUGAGA-CG- | |||||||| || | -----------CUGCACUCUAGCC |
Ubb | mmu-miR-762 | 39 | 65 | CGAGAC---AGGGCCGG-GGUCGGGG- | ||||| ||: ||| |: ||||| | ACUCUGCACUCUA-GCCACUUGCCCCA |
Ubb | mmu-miR-763 | 1 | 27 | CGGUGA-CCAAG---AAGGGUCGACC- | ::|:| ||| |||||||: || | -UUAUUCGGUCUGCAUUCCCAGUGGGC |
Ubb | mmu-miR-801 | 4 | 34 | CAGCUAAGGCGU-------GCGUGUCGUUAG | |||: ||:||| :| :|||::|| | UUCGG-UCUGCAUUCCCAGUGGGCAGUGAUG |
Ubb | mmu-miR-302c* | 117 | 124 | --------------GUCGUCCAUUGGGG---------UACAAUUU | :||| ||||:| ||||||| | ACAAGUUUCAAUAAUAGCUG--AACCUCUGUUAAAAAAUGUUAAU |
Ubb | mmu-miR-703 | 126 | 133 | AA------GAAA-GGAAGAC----------------UUCCAAAA | || ||| ||| |||||||| | AAUAAUAGCUGAACCU-CUGUUAAAAAAUGUUAAUAAAGGUUUUG |
Ubb | mmu-miR-106a | 38 | 60 | AUG-GACGUGACAAUC-GUGAAac | ||| ||||||| ||| ||||| | TACTCTGCACT-CTAGCCACTTgc |
Ubb | mmu-miR-141 | 6 | 33 | GGUAGA---AAUGGU---CUGUCACAAu | | :||| || ||| |:||||| | | CGGTCTGCATTCCCAGTGGGCAGTGATg |
Ubb | mmu-miR-155 | 16 | 40 | gGGGAUA-GUGUUA--AUCGUAAUu | ||| :| :||:| |:|||||| | tCCCAGTGGGCAGTGATGGCATTAc |
Ubb | mmu-miR-17-5p | 36 | 60 | UGAUG-GACGUGACAUUCGUGAAac | |:||| ||||||| ||: ||||| | ATTACTCTGCACTCTAGCCACTTgc |
Ubb | mmu-miR-19b | 25 | 48 | aGUCA-AAACGUACCUAAACGUGu | |||| | |||| | ||||| | gCAGTGATGGCATTACTCTGCACt |
Ubb | mmu-miR-200b | 8 | 33 | CAGUAGUAAUGGU---CCGUCAUAAu | ||| |||| ||| ||||||: | | GTCTGCATTCCCAGTGGGCAGTGATg |
Ubb | mmu-miR-20a | 37 | 60 | gAUG-GACGUGAUAUUCGUGAAau | ||| ||||||| ||: ||||| | tTACTCTGCACTCTAGCCACTTgc |
Ubb | mmu-miR-217 | 3 | 30 | UAGGUCAGUC--AA-GGAC-UACGUCAu | ||:|:||| | || || | : ||||| | ATTCGGTCTGCATTCCCAGTGGGCAGTg |
Ubb | mmu-miR-24* | 9 | 28 | uGACUAUAGUCGAGUCAUCCGUg | ||| ||: | ||||:|||| | tCTG-CATT--CCCAGTGGGCAg |
Ubb | mmu-miR-290 | 52 | 78 | uuuuucACGGGGGUA---UCAAA-CUc | |||||| || ||||| || | gccactTGCCCCAATTTAAGTTTAGAa |
Ubb | mmu-miR-298 | 89 | 111 | ccUUCUUGUCGG-GAGGAGACgg | || ||:|||: |||||| | tcAATAATAGCTGAACCTCTGtt |
Ubb | mmu-miR-301 | 28 | 49 | cgaaACUGUUAUGAUAACGUGAc | ||:|| |||| |||||| | gtgaTGGCATTACT-CTGCACTc |
Ubb | mmu-miR-302c* | 96 | 124 | gUCGUCCAUUGGGG---------UACAAUUu | ||| | ||||:| ||||||| | tAGCTG--AACCTCTGTTAAAAAATGTTAAt |
Ubb | mmu-miR-31 | 42 | 62 | GUCGAUACGGUCGUAGAACGGa | | || | |:||| |||||| | CTGC-ACTCTAGCCACTTGCCc |
Ubb | mmu-miR-324-3p | 9 | 31 | gGUCGUCGUGGAC-CCCGUCACc | | ||| : || | |||||||| | tCTGCATTCCCAGTGGGCAGTGa |
Ubb | mmu-miR-326 | 4 | 24 | ugaccuccuucccGGGUCUCC | ||||| || | ttcggtctgcattCCCAGTGG |
Ubb | mmu-miR-346 | 4 | 31 | ucuCCGUCCGUGAG-----CCCGUCugu | ||: |||:|| |||||| | ttcGGTCTGCATTCCCAGTGGGCAGtga |
Ubb | mmu-miR-370 | 2 | 26 | uUGGUCCA-AGGU-GGGGUCGUCCG | |:: ||| | || :|||||::||| | tATTCGGTCTGCATTCCCAGTGGGC |
Ubb | mmu-miR-449b | 45 | 62 | ggucGAUCGUUACGUG-ACGGa | ||||| ||| |||| | cactCTAGC----CACTTGCCc |
Ubb | mmu-miR-666 | 45 | 65 | ccGAGAGUGUCGACACGGGcga | |||| :| || ||||| | caCTCTAGCCACT-TGCCCcaa |
Ubb | mmu-miR-674 | 3 | 24 | augugguGAGGGUAGAGUCACg | || | || ||||| | attcggtCTGCATTCCCAGTGg |
Ubb | mmu-miR-675-3p | 20 | 42 | UGACUCGCCAAUCCCGU-AUGuc | | ||:|| || | |||| ||| | AGTGGGCAGTGATGGCATTACtc |
Ubb | mmu-miR-675-5p | 25 | 49 | uGACAC--CCGGGA-AAGGCGUGgu | | ||| ||| :| ||:|||| | gCAGTGATGGCATTACTCTGCACtc |
Ubb | mmu-miR-695 | 4 | 24 | AAGUCAGUGGAUACGGGUUAga | |||:||| | || ||||:| | TTCGGTCTGC-ATTCCCAGTgg |
Ubb | mmu-miR-705 | 33 | 57 | aCG-GGUGGGGUG-GAG---GGUGg | || ::||:|::| ||| |||| | gGCATTACTCTGCACTCTAGCCACt |
Ubb | mmu-miR-709 | 31 | 50 | aggaGGACGGAGACG-GAGg | | | |||||| ||| | atggCATTACTCTGCACTCt |
Ubb | mmu-miR-742 | 13 | 39 | aaAUGGGU----CGU-ACCACCGAAAg | | |||| ||| || |||| || | caTTCCCAGTGGGCAGTGATGGCATTa |
Ubb | mmu-miR-744 | 44 | 66 | CGACA-AUCGG-GAUCGGGGcgu | || | ||||| || ||||| | GCACTCTAGCCACTTGCCCCaat |
Ubb | mmu-miR-759 | 21 | 45 | CAGUUUUAACAAAC---GUGAGACG | || :: | || | | :||||||| | GTGGGCAGTGATGGCATTACTCTGC |
Ubb | mmu-miR-801 | 8 | 33 | CAG-C-UAAGGCGUGCGUGUCGUUAg | ||| | ||||| ::| :|||::|| | GTCTGCATTCCCAGTGGGCAGTGATg |