DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000240 mmu-miR-207 216150 Cdc34 cucccuccuCUCGGUCCUCUUCg |: :: ||||||| guuuuccucGGCUUUGGAGAAGa 2 15 140 162 [mm9:10:79150944-79150966:+] 0.5058 142 7 -14.59 -0.4039 MIMAT0004636 mmu-miR-93* 216150 Cdc34 gcccUUCACGAUCGAGUCGUCa || | :|| |||||||| uuacAAAUUUUACCUCAGCAGg 2 19 21 42 [mm9:10:79150825-79150846:+] 0.5137 162 7 -14.57 -0.1730 MIMAT0004822 mmu-miR-770-5p 216150 Cdc34 gcACCGGGUCUGUGCACCACGa ||| ||| :||||||| uuUGGAGAAGAGCUGUGGUGCa 2 21 152 173 [mm9:10:79150956-79150977:+] 0.4570 156 7 -21.64 -0.3758 MIMAT0003892 mmu-miR-762 216150 Cdc34 cgagaCAGGGCCGGGGUCGGGg | |:| |||||||| ccagaGACUCCAGCCCAGCCCa 2 18 246 267 [mm9:10:79151050-79151071:+] 0.4289 149 7 -22.31 -0.1034 MIMAT0003741 mmu-miR-674* 216150 Cdc34 aacAAGACUCUACCCUCGACAc ||: |||| ||||||| ggcUUUGGAGA--AGAGCUGUg 2 20 149 168 [mm9:10:79150953-79150972:+] 0.4570 152 7 -19.59 -0.1441 MIMAT0003455 mmu-miR-679 216150 Cdc34 uggUUCUCAGU-GGAGUGUCAGg ||| | || | ||||||| aggAAG-GCCAGCACCACAGUCu 2 20 268 289 [mm9:10:79151072-79151093:+] 0.4909 148 7 -18.51 -0.1399 MIMAT0005834 mmu-miR-466i 216150 Cdc34 aucACACAUACACACACACAUa || | || ||||||||: cucUGCUUUUG-GUGUGUGUGa 2 20 293 313 [mm9:10:79151097-79151117:+] 0.5528 141 0 -15.91 -0.2494 MIMAT0007873 mmu-miR-1896 216150 Cdc34 gaGGAGUGGGU-GGUAGUCU-CUc || |||:|| |: ||||| || caCCCCACUCAGCUUUCAGAUGAu 2 21 181 204 [mm9:10:79150985-79151008:+] 0.4341 131 0 -20.11 -0.1635 MIMAT0009434 mmu-miR-1961 216150 Cdc34 aagauugaUGAUGGAGu |||||||| ggcgacagACUACCUCa 2 10 59 75 [mm9:10:79150863-79150879:+] 0.4301 145 7 -16.86 -0.2390 MIMAT0000121 mmu-let-7g 216150 Cdc34 uugacaUGUUUGAUGAUGGAGu :|:| |||||||| ccucagGCGACAGACUACCUCa 2 17 54 75 [mm9:10:79150858-79150879:+] 0.3670 148 7 -19.76 -0.1713 MIMAT0000122 mmu-let-7i 216150 Cdc34 uuGUCGUGUUUGAUGAUGGAGu ||| :|:| |||||||| cuCAG-GCGACAGACUACCUCa 2 21 55 75 [mm9:10:79150859-79150879:+] 0.3670 154 7 -22.09 -0.1713 MIMAT0000383 mmu-let-7d 216150 Cdc34 uuGA-UACGUUGGAUGAUGGAGa || | ||:|| |||||||| gcCUCAGGCGACAGACUACCUCa 2 21 53 75 [mm9:10:79150857-79150879:+] 0.3670 163 7 -23.31 -0.1664 MIMAT0000521 mmu-let-7a 216150 Cdc34 uuGA-UAUGUUGGAUGAUGGAGu || | :|:|| |||||||| gcCUCAGGCGACAGACUACCUCa 2 21 53 75 [mm9:10:79150857-79150879:+] 0.3670 159 7 -23.97 -0.1696 MIMAT0000522 mmu-let-7b 216150 Cdc34 uuGGUGUGUUGGAUGAUGGAGu :|| :|:|| |||||||| ccUCAGGCGACAGACUACCUCa 2 21 54 75 [mm9:10:79150858-79150879:+] 0.3670 164 7 -27.73 -0.1696 MIMAT0000523 mmu-let-7c 216150 Cdc34 uuGGUAUGUUGGAUGAUGGAGu :|| :|:|| |||||||| ccUCAGGCGACAGACUACCUCa 2 21 54 75 [mm9:10:79150858-79150879:+] 0.3670 164 7 -25.68 -0.1696 MIMAT0000524 mmu-let-7e 216150 Cdc34 uuGA-UAUGUUGGAGGAUGGAGu || | :|:|| ||||||| gcCUCAGGCGACAGACUACCUCa 2 21 53 75 [mm9:10:79150857-79150879:+] 0.3670 151 7 -20.96 -0.1696 MIMAT0000525 mmu-let-7f 216150 Cdc34 uuGA-UAUGUUAGAUGAUGGAGu || | :|:| |||||||| gcCUCAGGCGACAGACUACCUCa 2 21 53 75 [mm9:10:79150857-79150879:+] 0.3670 151 7 -18.35 -0.1713 MIMAT0000545 mmu-miR-98 216150 Cdc34 uuguUAUGUUGAAUGAUGGAGu | :|:|| |||||||| ccucAGGCGACAGACUACCUCa 2 19 54 75 [mm9:10:79150858-79150879:+] 0.3670 158 7 -23.23 -0.1696 MIMAT0000567 mmu-miR-329 216150 Cdc34 uuuuuccaaucGACCCACACAa :| ||||||| uccucucugcuUUUGGUGUGUg 2 12 289 310 [mm9:10:79151093-79151114:+] 0.5528 143 7 -12.17 -0.7444 MIMAT0000590 mmu-miR-342-3p 216150 Cdc34 ugcccACGCUAA--AGACACACUcu ||| || | ||||||| cucucUGCUUUUGGUGUGUGUGAaa 3 19 291 315 [mm9:10:79151095-79151119:+] 0.5528 133 0 -13.90 -0.1611 MIMAT0000666 mmu-miR-320 216150 Cdc34 agcggGAGAGUUGGGUCGAAAa | | | ||:||||||| gcaaaCACCCCACUCAGCUUUc 2 18 176 197 [mm9:10:79150980-79151001:+] 0.4341 157 7 -18.61 -0.1161 MIMAT0000666 mmu-miR-320 216150 Cdc34 agcgggagaGUUGGGUCGAAAa :|| :|||||| gaaauaaaaUAAAAUAGCUUUc 2 14 312 333 [mm9:10:79151116-79151137:+] 0.5528 129 6 -8.62 -0.1614 MIMAT0004684 mmu-miR-362-3p 216150 Cdc34 acuuAGGAAC-UUGUCCACACAa ||: || : ||||||| cuccUCUCUGCUUUUGGUGUGUg 2 19 288 310 [mm9:10:79151092-79151114:+] 0.5528 141 7 -14.30 -0.7407 MIMAT0000741 mmu-miR-377 216150 Cdc34 uguuuucAACGGAAACACACUa ||| | ||||||| ucugcuuUUG-GUGUGUGUGAa 2 16 294 314 [mm9:10:79151098-79151118:+] 0.5528 145 7 -13.51 -1.0634 MIMAT0001095 mmu-miR-370 216150 Cdc34 ugGUCCAAGGUGGGGUCGUCCg || ||::|||:||||||| uaCAAAUUUUACCUCAGCAGGa 2 21 22 43 [mm9:10:79150826-79150847:+] 0.5137 172 7 -28.41 -0.6648 MIMAT0004853 mmu-miR-874 216150 Cdc34 agccagGGAGCCCGGUCCCGUc |: :|| ||||||| gaagagCUGUGGUGCAGGGCAa 2 17 158 179 [mm9:10:79150962-79150983:+] 0.4570 148 7 -20.03 -0.1847 MIMAT0004896 mmu-miR-590-3p 216150 Cdc34 ugauCGAAUA-UGUAUUUUAau |: |:| | ||||||| ugguGUGUGUGAAAUAAAAUaa 3 18 302 323 [mm9:10:79151106-79151127:+] 0.5528 132 0 -5.83 -0.2948

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G009563 Cdc34 Mus musculus 216150

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Cdc34 mmu-let-7d beg:57 end:75 pic:3' TTGATACGTTGGATGATGGAGA 5'& ||.|| |||||||| &5' ------GCGACAGACTACCTC- 3' Cdc34 mmu-let-7a beg:57 end:76 pic:3' TTGATATGTTGGATGATGGAGT 5'& .|.|| ||||||||| &5' ------GCGACAGACTACCTCA 3' Cdc34 mmu-let-7e beg:57 end:76 pic:3' TTGATATGTTGGAGGATGGAGT 5'& .|.|| |||||||| &5' ------GCGACAGACTACCTCA 3' Cdc34 mmu-let-7f beg:57 end:76 pic:3' TTGATATGTTAGATGATGGAGT 5'& .|.| ||||||||| &5' ------GCGACAGACTACCTCA 3' Cdc34 mmu-miR-98 beg:57 end:76 pic:3' TTGTTATGTTGAATGATGGAGT 5'& .|.|| ||||||||| &5' ------GCGACAGACTACCTCA 3' Cdc34 mmu-miR-1961 beg:59 end:76 pic:3' AAGATTGA-TGATGGAGT 5'& .|| ||||||||| &5' ----GACAGACTACCTCA 3' Cdc34 mmu-miR-149 beg:234 end:251 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& | . ||||||||| &5' ---------GGTGGGGAGCCAGA 3' Cdc34 mmu-miR-674star beg:153 end:169 pic:3' AACAAGACTCTACCCTCGACAC 5'& |||| |||||||| &5' -------GAGAA--GAGCTGTG 3' Cdc34 mmu-miR-362-3p beg:291 end:310 pic:3' ACTTAGGAACTTGT-CCACACAA 5'& || || ||||||| &5' ----TCTCTGCTTTTGGTGTGT- 3' Cdc34 mmu-miR-329 beg:294 end:310 pic:3' TTTTTCCAATCGAC--CCACACAA 5'& ||| ||||||| &5' ----------GCTTTTGGTGTGT- 3' Cdc34 mmu-miR-770-5p beg:157 end:173 pic:3' GCACCGGGTCTGTGCACCACGA 5'& ||| .||||||| &5' --------AGAGCTGTGGTGC- 3' Cdc34 mmu-let-7a beg:15 end:38 pic:3' TTGATATGTTGGATGATGGAGT 5'& |||| ||||| .||||||| &5' AACT-TACAAATT-TTACCTCA 3' Cdc34 mmu-let-7b beg:15 end:38 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& |||. .|||| .||||||| &5' AACT-TACAAATT-TTACCTCA 3' Cdc34 mmu-let-7b beg:53 end:76 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& .|| .|.|| ||||||||| &5' --TCAGGCGACAGACTACCTCA 3' Cdc34 mmu-let-7c beg:16 end:38 pic:3' TTGGTATGTTGGATGATGGAGT 5'& |||. ||||| .||||||| &5' AACT-TACAAATT-TTACCTCA 3' Cdc34 mmu-let-7c beg:51 end:76 pic:3' TTGGTA--TGTTGGATGATGGAGT 5'& .|| .|.|| ||||||||| &5' -GCCTCAGGCGACAGACTACCTCA 3' Cdc34 mmu-let-7d beg:21 end:37 pic:3' TTGATACGTTGGATGATGGAGA 5'& ||| .|||||| &5' -------CAAATT-TTACCTC- 3' Cdc34 mmu-let-7e beg:16 end:38 pic:3' TTGATATGTTGGAGGATGGAGT 5'& |||| ||||| |..||||||| &5' AACT-TACAAA-TTTTACCTCA 3' Cdc34 mmu-let-7f beg:15 end:38 pic:3' TTGATATGTTAGATGATGGAGT 5'& |||| ||||| .||||||| &5' AACT-TACAAATT-TTACCTCA 3' Cdc34 mmu-let-7g beg:16 end:38 pic:3' TTGACATGTTTGATGATGGAGT 5'& |||| ||||||.| .||||||| &5' AACT-TACAAATT-TTACCTCA 3' Cdc34 mmu-let-7g beg:54 end:76 pic:3' TTGACATGTTTGA----TGATGGAGT 5'& ||..| ||||||||| &5' -------CAGGCGACAGACTACCTCA 3' Cdc34 mmu-let-7i beg:54 end:76 pic:3' TTGTCGTGTTTGATGATGGAGT 5'& ||| .|.| ||||||||| &5' --CAG-GCGACAGACTACCTCA 3' Cdc34 mmu-let-7i beg:15 end:38 pic:3' TTGTCGTGTTTGATGATGGAGT 5'& ||| .|||||.| .||||||| &5' AACT-TACAAATT-TTACCTCA 3' Cdc34 mmu-miR-129-5p beg:254 end:272 pic:3' CGTTCGGGTCTGGCGTTTTTC 5'& ||||||| || |||..| &5' ---AGCCCAG-CC-CAAGGA- 3' Cdc34 mmu-miR-136star beg:189 end:207 pic:3' TTCTGAGTAAACTCTGCTACTA 5'& .||. |||.||||| &5' ---GCTTTC---AGATGATGA- 3' Cdc34 mmu-miR-1933-5p beg:92 end:108 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& || | ||||||. &5' ---------CCCATC-CCATGAT- 3' Cdc34 mmu-miR-1935 beg:278 end:301 pic:3' TCTCTAGGCGGTCG-----GAGACGGA 5'& || |||. ||||||.| &5' ------CCA-CAGTCTCCTCTCTGCTT 3' Cdc34 mmu-miR-1948 beg:219 end:239 pic:3' GACATGCTCACGA--GACGGATTT 5'& |.| | ||||||.. &5' ------GGGGACCGACTGCCTGG- 3' Cdc34 mmu-miR-1961 beg:23 end:38 pic:3' AAGATTGATGATGGAGT 5'& ||.| .||||||| &5' ----AATT-TTACCTCA 3' Cdc34 mmu-miR-196a beg:52 end:74 pic:3' GGGT-TGTTGTACTTTGATGGAT 5'& |.|| .|.||| .||||||| &5' CTCAGGCGACA---GACTACCT- 3' Cdc34 mmu-miR-196b beg:52 end:74 pic:3' GGGT-TGTTGTCCTTTGATGGAT 5'& |.|| .|.|||| ||||||| &5' CTCAGGCGACAG---ACTACCT- 3' Cdc34 mmu-miR-20astar beg:156 end:175 pic:3' GAAATTCACGAGCATTACGTCA 5'& ||| ||| ||..||||| &5' ----AAGAGCT-GTGGTGCAG- 3' Cdc34 mmu-miR-220 beg:155 end:172 pic:3' TTCACAGACTG--TGACACCACC 5'& || .|||||||| &5' --------GAAGAGCTGTGGTG- 3' Cdc34 mmu-miR-3099star beg:204 end:224 pic:3' GTTCCCGACCTTCCTTCGACC 5'& |||| ||| |||.||||| &5' CAAGC-CTG---GGAGGCTGG 3' Cdc34 mmu-miR-30astar beg:1 end:16 pic:3' CGACGTTTGTAGGCTGACTTTC 5'& ||.||| |||||| &5' -------ACGTCC--CTGAAA- 3' Cdc34 mmu-miR-30bstar beg:83 end:104 pic:3' CTGCATTTGTAGGTGTAGGGTC 5'& |.||...| ||| ||||||| &5' -ATGTGGGC-TCC-CATCCCA- 3' Cdc34 mmu-miR-30estar beg:1 end:16 pic:3' CGACATTTGTAGGCTGACTTTC 5'& ||.||| |||||| &5' -------ACGTCC--CTGAAA- 3' Cdc34 mmu-miR-335-5p beg:293 end:305 pic:3' TGTAAAAAGCAATAACGAGAACT 5'& ||||.|||. &5' --------------TGCTTTTGG 3' Cdc34 mmu-miR-370 beg:107 end:130 pic:3' TGGTCCA--AG-GTGGGGTCGTCCG 5'& ..|||| || .||||| |.| &5' -TTAGGTCCTCTTACCCC-GTA--- 3' Cdc34 mmu-miR-377 beg:293 end:314 pic:3' TGTTTTCAACGGAA-----ACACACTA 5'& |||.|| ||||||| &5' --------TGCTTTTGGTGTGTGTGA- 3' Cdc34 mmu-miR-423-5p beg:282 end:303 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& |||||| ||||||||...| &5' --AGTCTC-CTCTCTGCTTTT-- 3' Cdc34 mmu-miR-470 beg:250 end:272 pic:3' TGAGTGGTCACGGTCAGGTTCTT 5'& | |||| |||| |||||.| &5' ---CTCCAGC-CCAGCCCAAGGA 3' Cdc34 mmu-miR-582-3p beg:32 end:43 pic:3' AACCCAAGTCAACAAGTTGTCC 5'& |||.|||| &5' --------------TCAGCAGG 3' Cdc34 mmu-miR-673-5p beg:148 end:169 pic:3' GAGGTTCCTGGTCTCGACACTC 5'& |. ||| |||||||||. &5' --CTTTGGAGAAGAGCTGTGG- 3' Cdc34 mmu-miR-689 beg:221 end:245 pic:3' CCTGG--GGCGGCTCGCCCCTGC 5'& ||||| |.||| .|.||||| &5' GGACCGACTGCCTGGTGGGGA-- 3' Cdc34 mmu-miR-720 beg:45 end:64 pic:3' ACCTCCGGGGT-CGCTCTA 5'& || ||||.|| |||| &5' TGTGGGCCTCAGGCGA--- 3' Cdc34 mmu-miR-744star beg:45 end:67 pic:3' TCCAACTCCAATCA-CCGTTGTC 5'& || || |||.|||| &5' ----TGTGGGCCTCAGGCGACAG 3' Cdc34 mmu-miR-758 beg:46 end:68 pic:3' ATCACCTGG--TCCAGTGTTT 5'& ||||.|| ||| |||.| &5' --GTGGGCCTCAGGCGACAGA 3' Cdc34 mmu-miR-762 beg:242 end:262 pic:3' CGAGACAGGG--CCGGGGTCGGGG 5'& | || | |.||||||| &5' -----G-CCAGAGACTCCAGCCC- 3' Cdc34 mmu-miR-767 beg:154 end:174 pic:3' ACGAGTCTG-TTGGTACCACGT 5'& ||| |.|..||||||| &5' -----AGAAGAGCTGTGGTGCA 3' Cdc34 mmu-miR-7b beg:132 end:147 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& || .||.|||| &5' ----------CATGGGTTTTCC- 3' Cdc34 mmu-miR-804 beg:4 end:26 pic:3' AGGTCCACTCCTTGTTGAGTGT 5'& ||| ||| ||||.||| &5' TCCC--TGAAATA-AACTTACA 3' Cdc34 mmu-miR-883a-5p beg:24 end:41 pic:3' CATTGACGATGAAGA-GAGTCGT 5'& |.||. ||||||| &5' ---------ATTTTACCTCAGCA 3' Cdc34 mmu-miR-93star beg:27 end:42 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& .|| |||||||| &5' ---------TTACCTCAGCAG- 3' Cdc34 mmu-miR-98 beg:15 end:38 pic:3' TTGTTATGTTGAATGATGGAGT 5'& ||| ||||| .||||||| &5' AACT-TACAAATT-TTACCTCA 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cdc34 RAID00310151 mmu-miR-320-3p miRNA MIMAT0000666 Cdc34 mRNA 216150 CLIP-seq//Prediction 0.6308 Cdc34 RAID00518253 mmu-let-7e-5p miRNA MIMAT0000524 Cdc34 mRNA 216150 Prediction 0.2381 Cdc34 RAID00659341 mmu-miR-98-5p miRNA MIMAT0000545 Cdc34 mRNA 216150 Prediction 0.2455 Cdc34 RAID00766902 mmu-let-7k miRNA MIMAT0025580 Cdc34 mRNA 216150 Prediction 0.1828 Cdc34 RAID00971083 mmu-miR-874-3p miRNA MIMAT0004853 Cdc34 mRNA 216150 CLIP-seq//Prediction 0.6308 Cdc34 RAID01037603 mmu-miR-6962-5p miRNA MIMAT0027824 Cdc34 mRNA 216150 Prediction 0.1828 Cdc34 RAID01344831 mmu-let-7c-5p miRNA MIMAT0000523 Cdc34 mRNA 216150 Prediction 0.2381 Cdc34 RAID01549090 mmu-let-7a-5p miRNA MIMAT0000521 Cdc34 mRNA 216150 Prediction 0.2381 Cdc34 RAID01650620 mmu-miR-6918-5p miRNA MIMAT0027736 Cdc34 mRNA 216150 Prediction 0.1828 Cdc34 RAID01668817 mmu-let-7i-5p miRNA MIMAT0000122 Cdc34 mRNA 216150 Prediction 0.2381 Cdc34 RAID02018484 mmu-miR-370-3p miRNA MIMAT0001095 Cdc34 mRNA 216150 Prediction 0.2202 Cdc34 RAID02300385 mmu-miR-6969-5p miRNA MIMAT0027840 Cdc34 mRNA 216150 Prediction 0.1828 Cdc34 RAID02415896 mmu-miR-149-5p miRNA MIMAT0000159 Cdc34 mRNA 216150 Prediction 0.1828 Cdc34 RAID02461044 mmu-let-7f-5p miRNA MIMAT0000525 Cdc34 mRNA 216150 Prediction 0.2381 Cdc34 RAID02485558 mmu-let-7g-5p miRNA MIMAT0000121 Cdc34 mRNA 216150 Prediction 0.2381 Cdc34 RAID02808822 mmu-miR-329-3p miRNA MIMAT0000567 Cdc34 mRNA 216150 CLIP-seq//Prediction 0.6308 Cdc34 RAID02894126 mmu-miR-342-3p miRNA MIMAT0000590 Cdc34 mRNA 216150 CLIP-seq//Prediction 0.6308 Cdc34 RAID03006601 mmu-miR-7086-5p miRNA MIMAT0028078 Cdc34 mRNA 216150 Prediction 0.1828 Cdc34 RAID03060974 mmu-miR-1961 miRNA MIMAT0009434 Cdc34 mRNA 216150 Prediction 0.2202 Cdc34 RAID03062882 mmu-miR-377-3p miRNA MIMAT0000741 Cdc34 mRNA 216150 CLIP-seq//Prediction 0.6308 Cdc34 RAID03262980 mmu-miR-590-3p miRNA MIMAT0004896 Cdc34 mRNA 216150 Prediction 0.1828 Cdc34 RAID03370332 mmu-miR-362-3p miRNA MIMAT0004684 Cdc34 mRNA 216150 CLIP-seq//Prediction 0.6308 Cdc34 RAID03480958 mmu-let-7b-5p miRNA MIMAT0000522 Cdc34 mRNA 216150 Prediction 0.2381 Cdc34 RAID03697834 mmu-miR-7116-3p miRNA MIMAT0028130 Cdc34 mRNA 216150 Prediction 0.1828 Cdc34 RAID03722142 mmu-miR-196b-5p miRNA MIMAT0001081 Cdc34 mRNA 216150 Prediction 0.1828 Cdc34 RAID03762165 mmu-let-7d-5p miRNA MIMAT0000383 Cdc34 mRNA 216150 Prediction 0.2202 Cdc34 RAID03842143 mmu-miR-6951-3p miRNA MIMAT0027803 Cdc34 mRNA 216150 Prediction 0.1828 Cdc34 RAID03951478 mmu-miR-21b miRNA MIMAT0025121 Cdc34 mRNA 216150 Prediction 0.1828