DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000137 mmu-miR-126-5p 71860 Wdr16 gcgcAUGGUUU--UCAUUAUUac | :|||| | |||||| aaacUUUCAAAUUAUUAAUAAau 3 18 247 269 [mm9:11:67738326-67738348:-] 0.4937 132 0 -3.49 -0.1137 MIMAT0004531 mmu-miR-135a* 71860 Wdr16 gcggugccgagguuaGGGAUAu |||||| ucacaccuauuuuugCCCUAUa 2 8 92 113 [mm9:11:67738482-67738503:-] 0.4869 120 6 -15.29 -0.1914 MIMAT0000154 mmu-miR-142-5p 71860 Wdr16 ucaUCACGAA--AGAUGAAAUAc ||| || |:|||||||| ugaAGUUAUUUGUUUACUUUAUa 2 19 131 153 [mm9:11:67738442-67738464:-] 0.5319 157 7 -9.70 -1.2922 MIMAT0000154 mmu-miR-142-5p 71860 Wdr16 ucAUCACGAAAGAUGAAAUAc |||| | :|||||||| uaUAGU-CAAAUUACUUUAUc 2 20 110 129 [mm9:11:67738466-67738485:-] 0.4762 153 7 -9.44 -1.0508 MIMAT0000384 mmu-let-7d* 71860 Wdr16 ucUUUCCGUCGUCCAGCAUAUc |:|| ||: || |||| aaAGAGAAAGUUUAUCCUAUAu 2 21 206 227 [mm9:11:67738368-67738389:-] 0.5407 120 0 -5.50 -0.1050 MIMAT0004583 mmu-miR-130b* 71860 Wdr16 ucaucacguugucccUUUCUCa |||||| aaauugaaauauacuAAAGAGa 2 8 191 212 [mm9:11:67738383-67738404:-] 0.5876 120 6 -6.08 -0.2842 MIMAT0000569 mmu-miR-330* 71860 Wdr16 agagacguccgggacACGAAAcg |||||| ucugcucuauauaauUGCUUUca 3 9 55 77 [mm9:11:67752338-67752360:-] 0.5135 120 0 -11.16 -0.1759 MIMAT0004670 mmu-miR-7a* 71860 Wdr16 auaccgucugaCACUAAACAAc || ||||||| uuuaucuugaaGUUAUUUGUUu 2 12 124 145 [mm9:11:67738450-67738471:-] 0.5319 147 7 -5.60 -1.1367 MIMAT0001093 mmu-miR-411* 71860 Wdr16 ccaaucaccUGGCACAAUGUAu ||: | |||||| uuaacacuuACUAUCUUACAUu 2 14 161 182 [mm9:11:67738413-67738434:-] 0.5876 121 6 -4.96 -0.1858 MIMAT0004758 mmu-miR-463 71860 Wdr16 gauggaauauaccaCAGAUAGu ||:|||| auacuaaagagaaaGUUUAUCc 2 9 201 222 [mm9:11:67738373-67738394:-] 0.5407 124 0 -7.88 -0.1019 MIMAT0003167 mmu-miR-540-3p 71860 Wdr16 gguccuagcugGAGACUGGa :||||||| aaauuagaaggUUCUGACCa 2 10 266 285 [mm9:11:67738310-67738329:-] 0.4937 141 7 -14.12 -1.0598 MIMAT0003376 mmu-miR-302c 71860 Wdr16 ggugacuuuguaccuUCGUGAa |||||| ucaagauuccuuaauAGCACUa 2 8 75 96 [mm9:11:67752319-67752340:-] 0.5043 120 6 -10.31 -0.3032 MIMAT0003728 mmu-miR-374* 71860 Wdr16 gagccuguuacuAUUAUGUUGg | ||||||: uauuuguuuacuUUAUACAAUa 2 11 137 158 [mm9:11:67738437-67738458:-] 0.5319 126 0 -6.17 -0.2637 MIMAT0004821 mmu-miR-671-3p 71860 Wdr16 ccACCUCGGGA-CUCUUGGCCu || | || |||||||| uuUGCAUAACUCCAGAACCGGg 2 20 61 82 [mm9:11:67738513-67738534:-] 0.4975 146 7 -19.39 -0.4220 MIMAT0003471 mmu-miR-692 71860 Wdr16 cucacuccgcgaGUUUCUCUa :||||||| auugaaauauacUAAAGAGAa 2 10 193 213 [mm9:11:67738382-67738402:-] 0.5876 141 7 -8.50 -1.3027 MIMAT0005448 mmu-miR-467b 71860 Wdr16 guAUAUG---UACGUCCGUGAAUg ||||| |||: |||||| uuUAUACAAUAUGUUAACACUUAc 2 20 148 171 [mm9:11:67738424-67738447:-] 0.5876 126 6 -14.67 -0.3126 MIMAT0004892 mmu-miR-568 71860 Wdr16 cacACAUAUGUAAAUAUGUa ||| ||| |||||||| auuUGUUUAC-UUUAUACAa 2 18 138 156 [mm9:11:67738439-67738457:-] 0.5319 163 7 -10.63 -1.2507 MIMAT0004862 mmu-miR-877* 71860 Wdr16 acccuccucCCUCUUCUCCUGu | |||||||||| ------guaGAAGAAGAGGACc 2 14 1 16 [mm9:11:67752399-67752414:-] 0.6037 157 7 -16.93 -1.0080 MIMAT0005293 mmu-miR-467e 71860 Wdr16 ugUAU-AUGUACGAGUGUGAAUa ||| |:|||:| ||||||| uuAUACAAUAUGUUAACACUUAc 2 21 149 171 [mm9:11:67738424-67738446:-] 0.5876 167 7 -14.71 -1.2261 MIMAT0005835 mmu-miR-1-2-as 71860 Wdr16 accuuacauuucuuCAUACAu |||||| uacuaucuuacauuGUAUGUu 2 8 169 189 [mm9:11:67738406-67738426:-] 0.5876 120 6 -5.35 -0.1118 MIMAT0005836 mmu-miR-1186 71860 Wdr16 guACGGAAAU--UAAG-----GUCGUGAg |||:|| | |||| :|||||| auUGCUUUCAAGAUUCCUUAAUAGCACUa 2 21 68 96 [mm9:11:67752319-67752347:-] 0.5043 134 6 -17.15 -0.3058 MIMAT0005843 mmu-miR-1188 71860 Wdr16 agGACCGGGUU--GGAGUGUGGu | ||::::| :|||||||| acCGGGUUUGAUUUCUCACACCu 2 20 77 99 [mm9:11:67738496-67738518:-] 0.4869 154 7 -23.89 -0.8726 MIMAT0005855 mmu-miR-467h 71860 Wdr16 ugUAU-AUGUACGUGUGUGAAUa ||| |:|||: ||||||| uuAUACAAUAUGUUAACACUUAc 2 21 149 171 [mm9:11:67738424-67738446:-] 0.5876 159 7 -12.88 -1.2261 MIMAT0007868 mmu-miR-1903 71860 Wdr16 acagaguccuuCUUCUUCUUCc | |||||||| -----------GUAGAAGAAGa 2 12 1 11 [mm9:11:67752404-67752414:-] 0.6847 147 7 -11.29 -0.8129 MIMAT0009417 mmu-miR-1950 71860 Wdr16 acugguauaggAAUCUACGUCu || ||||||| gaagguagaaaUUUGAUGCAGc 2 12 21 42 [mm9:11:67752373-67752394:-] 0.5227 147 7 -13.05 -0.8830 MIMAT0009431 mmu-miR-1958 71860 Wdr16 ugAAUGA-CG-AAGGUGAAAGGAu ||| | || | :|:|||||| ccUUAAUAGCACUAUAUUUUCCUg 2 21 83 106 [mm9:11:67752309-67752332:-] 0.5151 138 6 -15.83 -0.1494 MIMAT0015642 mmu-miR-3471 71860 Wdr16 uuacggaaugucaACCUAGAGu |||||||| ------ugggcucUGGAUCUCc 2 10 1 16 [mm9:11:67738579-67738594:-] 0.5534 145 7 -11.92 -0.1324 MIMAT0000128 mmu-miR-30a 71860 Wdr16 gaaggucagcuccuACAAAUGu ||||||| aucuugaaguuauuUGUUUACu 2 9 127 148 [mm9:11:67738447-67738468:-] 0.5319 140 7 -11.90 -1.2526 MIMAT0000130 mmu-miR-30b 71860 Wdr16 ucGAC-UCACAUCCUACAAAUGu :|| ||| || ||||||| ucUUGAAGU-UA-UUUGUUUACu 2 21 128 148 [mm9:11:67738447-67738467:-] 0.5319 143 7 -9.28 -1.2526 MIMAT0000133 mmu-miR-101a 71860 Wdr16 aagucaAUA-GUGU-CAUGACau ||| :|:| |||||| uauauaUAUAUAUAUGUACUGga 3 16 223 245 [mm9:11:67738350-67738372:-] 0.4937 129 0 -9.77 -0.1045 MIMAT0000155 mmu-miR-142-3p 71860 Wdr16 agGUAUUUCAU-CCUUUGUG-AUGu :||| | || | ||||| ||| uuUAUACAAUAUGUUAACACUUACu 2 22 148 172 [mm9:11:67738423-67738447:-] 0.5876 124 0 -7.41 -1.2851 MIMAT0000215 mmu-miR-186 71860 Wdr16 ucGGGUUUUCCUCUUAA-GAAAc ||| | || |||| |||| ugCCCUAUAGUCAAAUUACUUUa 2 21 105 127 [mm9:11:67738468-67738490:-] 0.4762 124 0 -10.26 -1.1288 MIMAT0000248 mmu-miR-30e 71860 Wdr16 gaaggUCAGUUCCUACAAAUGu |||:| ||||||| cuugaAGUUA--UUUGUUUACu 2 18 129 148 [mm9:11:67738447-67738466:-] 0.5319 142 7 -13.06 -1.2503 MIMAT0000514 mmu-miR-30c 71860 Wdr16 cgACUCUCACAUCCUACAAAUGu ||| ||| || ||||||| cuUGA-AGU-UA-UUUGUUUACu 2 22 129 148 [mm9:11:67738447-67738466:-] 0.5319 147 7 -9.98 -1.2526 MIMAT0000515 mmu-miR-30d 71860 Wdr16 gaaggucagccccuACAAAUGu ||||||| aucuugaaguuauuUGUUUACu 2 9 127 148 [mm9:11:67738447-67738468:-] 0.5319 140 7 -11.90 -1.2526 MIMAT0000565 mmu-miR-328 71860 Wdr16 ugccuUCCCGUC-UCUCCCGGUc ||| | | ||||||| agcacAGGCCUGUCCAGGGCCAa 2 18 37 59 [mm9:11:67738536-67738558:-] 0.4975 144 7 -16.84 -0.1156 MIMAT0004651 mmu-miR-340-5p 71860 Wdr16 uuAGUCAGAGUAACGAAAUAUu |:| |:| || ||||||| agUUA-UUUGUUUACUUUAUAc 2 21 134 154 [mm9:11:67738441-67738461:-] 0.5319 154 7 -5.18 -1.2070 MIMAT0000616 mmu-miR-101b 71860 Wdr16 aagucgAUA-GUGU-CAUGACau ||| :|:| |||||| uauauaUAUAUAUAUGUACUGga 3 16 223 245 [mm9:11:67738350-67738372:-] 0.4937 129 0 -9.77 -0.1045 MIMAT0000746 mmu-miR-381 71860 Wdr16 ugucucucgaacgggAACAUAu |||||| acuuacuaucuuacaUUGUAUg 2 8 166 187 [mm9:11:67738408-67738429:-] 0.5876 120 6 -8.11 -0.1137 MIMAT0004745 mmu-miR-384-5p 71860 Wdr16 uguaacggauccUUAACAAAUGu | |||||||| uaucuugaaguuAUUUGUUUACu 2 12 126 148 [mm9:11:67738447-67738469:-] 0.5319 147 7 -8.60 -1.2538 MIMAT0003169 mmu-miR-539 71860 Wdr16 ugugUGGUUCCUAUUAAAGAGg |||::| |:||||||| cagaACCGGGUUUGAUUUCUCa 2 19 73 94 [mm9:11:67738501-67738522:-] 0.4975 162 7 -19.70 -0.6770 MIMAT0003450 mmu-miR-488 71860 Wdr16 cugguucuuugucgGAAAGUu |||||| auguacuggauaaaCUUUCAa 2 8 236 256 [mm9:11:67738339-67738359:-] 0.4937 120 6 -9.52 -0.2404 MIMAT0003450 mmu-miR-488 71860 Wdr16 cugguucuuugucgGAAAGUu |||||| gcucuauauaauugCUUUCAa 2 8 58 78 [mm9:11:67752337-67752357:-] 0.5135 120 6 -8.42 -0.1855 MIMAT0003513 mmu-miR-505 71860 Wdr16 ucuuuugGUCGUUCACAACUgc || :: |||||| uaucuuaCAUUGUAUGUUGAaa 3 16 172 193 [mm9:11:67738402-67738423:-] 0.5876 123 0 -7.26 -0.2844 MIMAT0004869 mmu-miR-421 71860 Wdr16 cgcggguuaaUUACAGACAACUa | ||| |||||| acuaucuuacAUUGUAUGUUGAa 2 14 170 192 [mm9:11:67738403-67738425:-] 0.5876 125 6 -9.52 -0.3535 MIMAT0004936 mmu-miR-873 71860 Wdr16 uccUC-UGAGUGUUCAAGGACg || ||| |:| |||||| aauAGCACU-AUAUUUUCCUG- 2 19 87 106 [mm9:11:67752309-67752328:-] 0.5151 123 6 -11.18 -0.1465 MIMAT0005850 mmu-miR-1192 71860 Wdr16 uuaaaccagacaaacAAACAAa |||||| uuuaucuugaaguuaUUUGUUu 2 8 124 145 [mm9:11:67738450-67738471:-] 0.5319 120 6 -5.46 -0.1029

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G067790 Cfap52 Mus musculus 71860

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Wdr16 mmu-miR-467e beg:153 end:171 pic:3' TGTATATGTACGAGTGTGAATA 5'& |.|||.| ||||||| &5' ------ATATGTTAACACTTA- 3' Wdr16 mmu-miR-467h beg:153 end:171 pic:3' TGTATATGTACGTGTGTGAATA 5'& |.|||. ||||||| &5' ------ATATGTTAACACTTA- 3' Wdr16 mmu-miR-328 beg:40 end:59 pic:3' TGCCTTCCCGT-CTC-TCCCGGTC 5'& ||| | ||||||| &5' -------GGCCTGTCCAGGGCCA- 3' Wdr16 mmu-miR-671-3p beg:68 end:81 pic:3' CCACCTCGGGACTCTTGGCCT 5'& .|| |||||||| &5' -------TCC--AGAACCGG- 3' Wdr16 mmu-miR-3471 beg:1 end:16 pic:3' TTACGGAATGTCAACCTAGAGT 5'& .| |||||||| &5' --------GCTC-TGGATCTC- 3' Wdr16 mcmv-miR-m88-1 beg:71 end:93 pic:3' TCTGGGGCTGTAGCTGAAGAC 5'& ||| |||. |.||.|||| &5' AGAA-CCGGGTTTGATTTCT- 3' Wdr16 mmu-miR-1188 beg:78 end:99 pic:3' AGGACCGGGTTG--GAGTGTGGT 5'& ||.. |. |||||||| &5' ----GGTTTGATTTCTCACACC- 3' Wdr16 mmu-miR-1940 beg:1 end:27 pic:3' TTGACGAGG--TGGAAGAGTCAGGAGGTA 5'& ||||. |.|| | ||| |.|||| &5' ----GCTCTGGATCTCCGCAG-CTTCCA- 3' Wdr16 mmu-miR-19a beg:48 end:69 pic:3' AGTCAAAACGTATCTAAACGTGT 5'& ||| || .||||||.| &5' -CAGG---GCCAA-GTTTGCATA 3' Wdr16 mmu-miR-206 beg:90 end:110 pic:3' GGTGTGTGA-AGGAATGTAAGGT 5'& ||||| || |..||.| || &5' -CACAC-CTATTTTTGC---CC- 3' Wdr16 mmu-miR-2145 beg:34 end:57 pic:3' TTG-GTCCGGGCTGGGA-CGA 5'& |.| ||||||.| || || &5' AGCACAGGCCTGTCCAGGGC- 3' Wdr16 mmu-miR-299 beg:165 end:182 pic:3' TTCGCCAAATGGCAGGGTGTAT 5'& |||| ||..|||| &5' -------TTACTATCTTACAT- 3' Wdr16 mmu-miR-300 beg:49 end:69 pic:3' CTTCTCTCGAACGGGAACGTAT 5'& ||.|| .||||||| &5' ----AGGGCCAAG-TTTGCATA 3' Wdr16 mmu-miR-30e beg:131 end:148 pic:3' GAAGGTCAGTTCCTACAAATGT 5'& |||.| ||||||| &5' -----AGTTATT--TGTTTAC- 3' Wdr16 mmu-miR-3475 beg:60 end:77 pic:3' AAGTTTGGTACACG----GAGGTCT 5'& ||| ||||||| &5' -----------TGCATAACTCCAGA 3' Wdr16 mmu-miR-448 beg:221 end:241 pic:3' TACCCTGTAGG-ATGTATACGTT 5'& |.|| ||.|||||.| &5' -----ATATATATATATATGTA- 3' Wdr16 mmu-miR-470 beg:35 end:56 pic:3' TGAGTG-GTCACGGTCAGGTTCTT 5'& .| ||| ||| |||||.|. &5' ----GCACAG-GCCTGTCCAGGG- 3' Wdr16 mmu-miR-493 beg:238 end:256 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& |||| |.| ||.|||| &5' -CTGG-ATAA------ACTTTCA 3' Wdr16 mmu-miR-539 beg:74 end:94 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& |||..| |.||||||| &5' ----ACCGGGTTTGATTTCTC- 3' Wdr16 mmu-miR-540-3p beg:269 end:285 pic:3' GGTCCTAGCTG--GAGACTGGA 5'& || .||||||| &5' --------GAAGGTTCTGACC- 3' Wdr16 mmu-miR-654-5p beg:153 end:174 pic:3' TGTGTACAAGACGTCGAATGGT 5'& |.||||| || |||||.| &5' --ATATGTTAA-CA-CTTACTA 3' Wdr16 mmu-miR-760 beg:36 end:58 pic:3' AGGGGTGTCTG----GGTCTCGGC 5'& |||||.| ||||.||| &5' ----CACAGGCCTGTCCAGGGCC- 3' Wdr16 mmu-miR-568 beg:138 end:156 pic:3' CACACATATGTAAATATGTA 5'& ||| ||| |||||||| &5' ---TGTTTAC-TTTATACA- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Cfap52; Wdr16 mmu-let-7a 148 180 UGAUAUGU----------UGGAUGAUGGAGU- :|||||| ||:|||||:||:| UUUAUACAAUAUGUUAACACUUACUAUCUUAC Cfap52; Wdr16 mmu-let-7c 148 180 UUGGUAUGU----------UGGAUGAUGGAGU- ::||||| ||:|||||:||:| -UUUAUACAAUAUGUUAACACUUACUAUCUUAC Cfap52; Wdr16 mmu-miR-125a 38 57 -GUGUCCAAUUUCCCAGAGUCCCU |||||| ||| ||||| GCACAGGCCU----GUC-CAGGGC Cfap52; Wdr16 mmu-miR-125b 38 57 AGUGUUCAAUCCCAGAGUCCCU ||||:| ||| ||||| GCACAGGCCU--GUC-CAGGGC Cfap52; Wdr16 mmu-miR-138 64 77 CUAAGUGUUGUGGUCGA ||:||| |||| ---GCAUAACUCCAGA- Cfap52; Wdr16 mmu-miR-140* 13 35 -AGGCACC-AAGAUGGGACACCAU |||| ||| |||||||| CUCCGCAGCUUCCACCCUGUGU-- Cfap52; Wdr16 mmu-miR-142-5p 133 154 CAUCACGAA--AGAUGAAAUAC ||| || |:|||||||| -AAGUUAUUUGUUUACUUUAUA Cfap52; Wdr16 mmu-miR-149 30 56 CCUCACUUCU-GUG-CCU--C-GGUCU- ||| || ||| || | ||||: --UGUGUCGAGCACAGGCCUGUCCAGGG Cfap52; Wdr16 mmu-miR-184 25 54 -UGGGA-AUAG-UCAA----GAGGCAGGU- ||||| |:|| || | |:||||| CACCCUGUGUCGAGCACAGGC-CUGUCCAG Cfap52; Wdr16 mmu-miR-193 1 51 GACCC---------------UGAA------ACA---------UCCGGUCAA |||| :||| ||| ||||| || -UGGGCUCUGGAUCUCCGCAGCUUCCACCCUGUGUCGAGCACAGGCCUGUC Cfap52; Wdr16 mmu-miR-196a 152 178 GGUUGUUGUACUU-------UGAUGGAU ||||:||| ||||:|| --UACAAUAUGUUAACACUUACUAUCUU Cfap52; Wdr16 mmu-miR-199a 16 46 CUUGUC----------CAUCAGACUUGUGACCC :||| || ||| ||:||| || -CGCAGCUUCCACCCUGU-GUC-GAGCACAGGC Cfap52; Wdr16 mmu-miR-19b 50 98 AGUCA------AAACGUA------------CCUAAAC--- GUGU ||| ||||||| ||:|||| |||| CCAGGGCCAAGUUUGCAUAACUCCAGAACCGGGUUUGAUUUCUCACAC Cfap52; Wdr16 mmu-miR-206 164 187 GGUGUGUGAAGGAAUGUAAGGU- ||| ||| :|||||||| :| ACACUUACUAUCUUACAUUGUAU Cfap52; Wdr16 mmu-miR-210 17 45 AGUCGGC-----GACAGUGUGCGUGUC- ||||: |||| |: |||||| GCAGCUUCCACCCUGUGUCGAGCACAGG Cfap52; Wdr16 mmu-miR-216b 38 59 AGUGUAAACGGACGUCUCUAAAGGG |||| |||||: ||: || GCACAG--GCCUGUCCAGGG--CCA Cfap52; Wdr16 mmu-miR-218 32 45 UGUACCAAUCUAGUUCGUGUU- :||:||||||: ---------UGUCGAGCACAGG Cfap52; Wdr16 mmu-miR-24 27 60 GACAAGGACGA--CUUGA------------CUCGGU- ||||: ||:| |:|||| ----CCCUGUGUCGAGCACAGGCCUGUCCAGGGCCAA Cfap52; Wdr16 mmu-miR-291a-3p 19 43 CCGU--GUGUUUCACC-UUCGUGAAA || ||| ||| :||||| AGCUUCCACCCUGUGUCGAGCACA-- Cfap52; Wdr16 mmu-miR-292-3p 19 43 UGUGAGUUUUGGAC-C-GC-CGUGAA :||: |||| | || |||| -AGCUUCCACCCUGUGUCGAGCACA- Cfap52; Wdr16 mmu-miR-296 39 59 -UGUCCUAACUCCCCCCCGGGA ||||| || ||||| CACAGGCCUGUCCA-GGGCCA- Cfap52; Wdr16 mmu-miR-300 35 70 CUUCUCUCGAA--CGGG--------------AACGUAU- |||| |||: ||||||| ----CGAGCACAGGCCUGUCCAGGGCCAAGUUUGCAUAA Cfap52; Wdr16 mmu-miR-326 28 57 UGAC-CUCCU----UCC---CGGGUCUCC ||| | || ||| |:||||:| CCUGUGUCGAGCACAGGCCUGUCCAGGGC Cfap52; Wdr16 mmu-miR-328 42 60 UGCCUUCCCGUCUC--UCCCGGUC ||| ||||||| ------AGGCCUGUCCAGGGCCAA Cfap52; Wdr16 mmu-miR-331 41 59 AAGAUCCUAUCCGGGUCCCCG- ||| |:|||||| | ---CAGGCCU-GUCCAGGGCCA Cfap52; Wdr16 mmu-miR-370 17 47 UUGGUCCAAGGUGGGG------UCGU--CCG- ||| ||||||||: |||| ||| --GCAGCUUCCACCCUGUGUCGAGCACAGGCC Cfap52; Wdr16 mmu-miR-378 37 57 -UGUGUCCUGGACCUCAGUCCUC :|||||| |||| ||||: AGCACAGG-CCUGUC--CAGGGC Cfap52; Wdr16 mmu-miR-423 45 86 -GACUC--CCCGGA--------------GUCU-GGCUCGA ||| ||||| |||| |||:|:| CCUGUCCAGGGCCAAGUUUGCAUAACUCCAGAACCGGGUUU Cfap52; Wdr16 mmu-miR-434-5p 21 41 CCAAGUUUGGUACUCAGCUCGA ||| ||| || ||||||| -CUUCC-ACCCUGUGUCGAGCA Cfap52; Wdr16 mmu-miR-470 37 57 AGUG-GUCACGGUCAGGUUCUU :| ||| ||| |||||:|: -AGCACAG-GCCUGUCCAGGGC Cfap52; Wdr16 mmu-miR-486 1 46 GAGCCC------------CGUCGAG-------------UCAUGUCCU :||| ||||||: || ||||| --UGGGCUCUGGAUCUCCGCAGCUUCCACCCUGUGUCGAGCACAGGC Cfap52; Wdr16 mmu-miR-491 4 20 GGAGUACCUUCCCAAGGGGUGA ||| |||| ||:||:| GCUC-UGGA-----UCUCCGCA Cfap52; Wdr16 mmu-miR-503 1 24 CGUCAU-GACA-AG-GGCGACGAU :| ||| || |||| ||| -UGGGCUCUGGAUCUCCGCAGCUU Cfap52; Wdr16 mmu-miR-539 63 95 -UGUG---------UGGUUCCUAUUAAAGAGG :||: |||::| |:||||||| UGCAUAACUCCAGAACCGGGUUUGAUUUCUCA Cfap52; Wdr16 mmu-miR-542-5p 2 22 GCACUGUACUACUAGGGGC-UC- |:| ||||:||| || --GGGCUCUG-GAUCUCCGCAGC Cfap52; Wdr16 mmu-miR-652 37 60 ACGUGUUGGGAUCA--CCGCGGUAA |||||: |||: || |||| AGCACAGGCCUGUCCAGG-GCCAA- Cfap52; Wdr16 mmu-miR-675-5p 1 28 UGACACCCGGGAA----AGGCGU----GGU- |||||:|| |||||| ||| ----UGGGCUCUGGAUCUCCGCAGCUUCCAC Cfap52; Wdr16 mmu-miR-676 18 58 -UCGAG-------------UUGU---UGGA---GUCCUGCC ||||: |:|| :||| ||||:| CAGCUUCCACCCUGUGUCGAGCACAGGCCUGUCCAGGGCC- Cfap52; Wdr16 mmu-miR-678 20 43 -GGAGGUCAGGAACGUGGCUC-UG- |:|||| || ||:::|||| || GCUUCCA--CCCUGUGUCGAGCACA Cfap52; Wdr16 mmu-miR-679 25 48 -UGGUUCUCAGUGGAGUGUCAGG- ||| | |||: ||||| || CACCCUGUGUCGAG-CACAGGCCU Cfap52; Wdr16 mmu-miR-680 26 49 GGGGGUACAG-UCGUCUACGGG- |||::|||| |||| |||: ACCCUGUGUCGAGCACAGGCCUG Cfap52; Wdr16 mmu-miR-695 91 118 AAGUCAGUGGAU----ACGGG---UUAGA ||| |||||| ||||| |:|| CUCA--CACCUAUUUUUGCCCUAUAGUCA Cfap52; Wdr16 mmu-miR-696 13 47 -GGGUGUCG--------------UUCGUGUGCG- :||:|||| :|||||| || CUCCGCAGCUUCCACCCUGUGUCGAGCACAGGCC Cfap52; Wdr16 mmu-miR-699 34 59 -GCUCG-GUCC----AGCGUGACGGA ||||| |||| || || ||| UCGAGCACAGGCCUGUC-CAGGGCCA Cfap52; Wdr16 mmu-miR-705 3 30 ACGGGU----GGGGUG--GAGGGUGG- ||:| |:||:| ||:||||| GGCUCUGGAUCUCCGCAGCUUCCACCC Cfap52; Wdr16 mmu-miR-711 61 87 GAAUGUAGAGAGG----GGCCCAGGG ||:||| |||| ||||||:: UUUGCAUAACUCCAGAACCGGGUUUG Cfap52; Wdr16 mmu-miR-715 40 84 -GUGCG-------CCCC---CACACGU------------GCCUC || || ||| || |||| |||: ACAGGCCUGUCCAGGGCCAAGUUUGCAUAACUCCAGAACCGGGU Cfap52; Wdr16 mmu-miR-719 28 40 UUGUAAAAAGACAUCGGCUCUA |||| |:|||| --------CCUGU-GUCGAGC- Cfap52; Wdr16 mmu-miR-744 2 21 CGACAAUCGGGAUC--GGGGCGU- :||:||:| |:||||| -----GGGCUCUGGAUCUCCGCAG Cfap52; Wdr16 mmu-miR-761 16 41 ACACAGUCAAA-GUGGGACGA----CG- | ||| || |||||||: || --CG-CAGCUUCCACCCUGUGUCGAGCA Cfap52; Wdr16 mmu-miR-762 43 81 -CGAGACAGGG-CCGG--------------GGUCGGGG- || |||||| |||| |||| || GGC-CUGUCCAGGGCCAAGUUUGCAUAACUCCAGAACCG Cfap52; Wdr16 mmu-miR-763 3 24 -CGGUGACCAAGAAGG-GUCGACC ||: |||| ||| || ||||| GGCU-CUGGAUCU-CCGCAGCUU- Cfap52; Wdr16 mmu-miR-764-3p 39 75 -UGUCAACGGUGAUA--CCGG-------------AGGA |||| ||| | |||| ||| CACAG--GCCUGUCCAGGGCCAAGUUUGCAUAACUCCA Cfap52; Wdr16 mmu-miR-770-3p 17 49 GGUCG-AGGUG---CA--------GUCCGGGUGC |||| ||||| || ||||||: GCAGCUUCCACCCUGUGUCGAGCACAGGCCUG-- Cfap52; Wdr16 mmu-miR-98 152 180 UUGUUAUGU-----UGAAUGAUGGAGU- ||||||:: ||||||||:||:| UACAAUAUGUUAACACUUACUAUCUUAC Cfap52; Wdr16 mmu-miR-142-5p 146 153 CA---------------------UCACGAA--AGAUGAAAUAC ||| |:|||||||| AUAGUCAAAUUACUUUAUCUUGAAGUUAUUUGUUUACUUUAUA Cfap52; Wdr16 mmu-miR-328 52 59 UGCCUUC-------------------CCGU-CUC-UCCCGGUC ||| | ||||||| GCAGCUUCCACCCUGUGUCGAGCACAGGCCUGUCCAGGGCCAA Cfap52; Wdr16 mmu-miR-539 87 94 U--------------------GUG-UGGUUCCUAUUAAAGAGG || |||::| |:||||||| AGGGCCAAGUUUGCAUAACUCCAGAACCGGGUUUGAUUUCUCA Cfap52; Wdr16 mmu-let-7a 153 178 UGAUAUGU-----UGGAUGAUGGAGU || |||:: ||:|||||:||:| ACAATATGTTAACACTTACTATCTTA Cfap52; Wdr16 mmu-let-7c 152 178 uUGGUAUGU-----UGGAUGAUGGAGU || |||:: ||:|||||:||:| tACAATATGTTAACACTTACTATCTTA Cfap52; Wdr16 mmu-miR-125a 39 56 GUGUCCAAUUUCCCAGAGUCCCu |||||| ||| ||||| CACAGG----CCTGTC-CAGGGc Cfap52; Wdr16 mmu-miR-138 60 77 CUAA-GUGUUGUGGUCga | || ||:||| |||| GTTTGCATAACTCCAGaa Cfap52; Wdr16 mmu-miR-140* 14 36 AGGC-ACCAAGAUGGGACACcau |||| | ||| |||||||| TCCGCAGCTTCCACCCTGTGtcg Cfap52; Wdr16 mmu-miR-149 35 60 cCUCACUUCUGUGC----CUCGGUcu ||| ||:| :| |:|||| cGAGCACAGGCCTGTCCAGGGCCAag Cfap52; Wdr16 mmu-miR-184 26 52 UGGGA-AUAG-UCAAG---AGGCAGGU ||||| |:|| || | |:||||| ACCCTGTGTCGAGCACAGGCCTGTCCA Cfap52; Wdr16 mmu-miR-193 40 62 gacCCUGAAACAU-CCGG-UCAA || || | | |||| |||| acaGGCCTGTCCAGGGCCAAGTT Cfap52; Wdr16 mmu-miR-196a 150 177 gguUGUUGUAC--UU-----UGAUGGAu ||||:||| || ||||:|| tatACAATATGTTAACACTTACTATCTt Cfap52; Wdr16 mmu-miR-199a 25 45 cUUGUCCAUCAGACUUGUGACCc | | || ||| ||:||| || cACCCTGT-GTC-GAGCACAGGc Cfap52; Wdr16 mmu-miR-19b 40 68 aGUCAAAAC--GUACC----UAAACGUGU ||| || || || :||||||:| aCAGGCCTGTCCAGGGCCAAGTTTGCATA Cfap52; Wdr16 mmu-miR-216b 56 93 aGUGUAAACG----GACGUCU---------CUAAAGGG || :||||| || |||| ||||||:| cCAAGTTTGCATAACTCCAGAACCGGGTTTGATTTCTC Cfap52; Wdr16 mmu-miR-218 23 43 uguaccaAUCUAGUUCGUGUu |: :||:|||||| tccacccTGTGTCGAGCACAg Cfap52; Wdr16 mmu-miR-24 29 58 GACA-AG-----GAC--GACUUGACUCGGU |||| || | | ||| | |:|||| CTGTGTCGAGCACAGGCCTGTCCAGGGCCA Cfap52; Wdr16 mmu-miR-291a-3p 23 44 ccGUGUGUUUCACCUUCGUGaaa ||| | : || | ||||| tcCACCCTGTGTCG-AGCACagg Cfap52; Wdr16 mmu-miR-292-3p 17 43 uGU-GAGUUUUGGAC-C-GC-CGUGaa || ||: | |||| | || |||| gCAGCTTCCACCCTGTGTCGAGCACag Cfap52; Wdr16 mmu-miR-296 40 59 UGUCCUAAC---UCCCCCCCGGga ||||| || | ||||| ACAGGCCTGTCCA----GGGCCaa Cfap52; Wdr16 mmu-miR-300 38 68 CUUCUCUCGA-A-----CGG---GAACGUAU | | ||: || | ||| :||||||| GCACAGGCCTGTCCAGGGCCAAGTTTGCATA Cfap52; Wdr16 mmu-miR-328 37 59 ugccuUCCCGUC-UCUCCCGGUc ||| | | ||||||| agcacAGGCCTGTCCAGGGCCAa Cfap52; Wdr16 mmu-miR-331 33 57 aAGAUCCUAUCCG----GGUCCCcg || || | |||| |||||| gTCGAGCACAGGCCTGTCCAGGGcc Cfap52; Wdr16 mmu-miR-370 15 45 uugGUCCAAGGUGGG---------GUCGUCCG ||| |||||||| || ||||| ccgCAGCTTCCACCCTGTGTCGAGCA-CAGGC Cfap52; Wdr16 mmu-miR-378 38 56 uGUGUCCUGGACCUCA-GUCCuc |||||| ||| || |||| gCACAGG-CCT---GTCCAGGgc Cfap52; Wdr16 mmu-miR-423 46 84 GAC---UCCC--------CG----GA-GUC-UGGCUCGA ||| |||| || || ||| ||||:|:| CTGTCCAGGGCCAAGTTTGCATAACTCCAGAACCGGGTT Cfap52; Wdr16 mmu-miR-434-5p 20 40 CCAAGUUUGGUACUCAGCUCGa | ||| ||| || ||||||| GCTTC-CACCCTGTGTCGAGCa Cfap52; Wdr16 mmu-miR-470 38 56 aGUGGUCACGGUCAGGUUCuu || ||| ||| |||||:| gCA-CAG-GCCTGTCCAGGgc Cfap52; Wdr16 mmu-miR-486 33 55 gAGC-CCCGUCGAGUCAUGUCCu ||| | ||| | || |||| gTCGAGCACAGGCCTGTCCAGGg Cfap52; Wdr16 mmu-miR-490 36 57 gUCGUACCUCAGG--AGGUCCaac |||| || || |||||| gAGCA--CAGGCCTGTCCAGGgcc Cfap52; Wdr16 mmu-miR-539 73 94 ugugUGGUUCCUAUUAAAGAGg |||::| |:||||||| cagaACCGGGTTTGATTTCTCa Cfap52; Wdr16 mmu-miR-542-5p 1 19 gCACUGUACUACUAGGGGCuc | | : || ||||:||| tGGGCTCTG--GATCTCCGca Cfap52; Wdr16 mmu-miR-652 37 60 aCGUGUUGGGAUCA--CCGCGGUaa |||||: ||| || | |||| aGCACAGGCCT-GTCCAGGGCCAag Cfap52; Wdr16 mmu-miR-676 37 58 UCGAGUUGUUGGA---GUCCUGcc ||| || ::||| ||||:| AGCACA--GGCCTGTCCAGGGCca Cfap52; Wdr16 mmu-miR-678 21 40 GGAGGUCAGGAACGUGGCUCug |:|||| || ||:::|||| CTTCCA--CCCTGTGTCGAGca Cfap52; Wdr16 mmu-miR-679 26 46 UGGUUCUCAGUGGAGUGUCAGG ||| | |||: ||||| || ACCCTGTGTCG-AGCACAGGCC Cfap52; Wdr16 mmu-miR-695 89 114 AAGUCAGUGGAU----ACGGGUUAga ||| |||||| ||||| || TTCTCACACCTATTTTTGCCCTATag Cfap52; Wdr16 mmu-miR-696 28 45 GGGUGUCGUUCGUGUGCG ||:::: |:|||||| || CCTGTGTCGAGCACAGGC Cfap52; Wdr16 mmu-miR-699 35 58 GCUCG-GUCCAG-C--GUGACGGa ||||| |||| | | || ||| CGAGCACAGGCCTGTCCAGGGCCa Cfap52; Wdr16 mmu-miR-700 1 21 ccACCUGAG-CC-AAGGGCGcac |||:||| || | :|||| --TGGGCTCTGGATCTCCGCagc Cfap52; Wdr16 mmu-miR-705 9 28 aCGGGUGGGGUGGAGGGUGG | :| || || ||:||||| gGATCTCCGCAGCTTCCACC Cfap52; Wdr16 mmu-miR-715 25 46 GUGCGCCCCCACACGUG-CCuc ||| | | | | |||| || CACCCTGTGTCGAGCACAGGcc Cfap52; Wdr16 mmu-miR-719 20 40 uuguaaaaaGACAUCGGCUCua |||| |:|||| gcttccaccCTGT-GTCGAGca Cfap52; Wdr16 mmu-miR-744 1 19 cgacAAUCGGGAUC--GGGGCGU | :||:||:| |:||||| ----TGGGCTCTGGATCTCCGCA Cfap52; Wdr16 mmu-miR-761 13 34 acacaGUC-AAAGUGGGACGACg ||| || ||||||| || ctccgCAGCTTCCACCCTG-TGt Cfap52; Wdr16 mmu-miR-762 26 52 cGAGACAGGGC-CG-G---GGUCGGGG | |||| :|| || | || |:|| aCCCTGTGTCGAGCACAGGCCTGTCCA Cfap52; Wdr16 mmu-miR-763 3 24 CGGUGACCAAGAAGGGUCGAcc | | |||| ||| | ||||| GGCTCTGGATCTCCGCAGCTtc Cfap52; Wdr16 mmu-miR-764-3p 17 52 uGUCAACGGUG----AUA--------CCGG--AGGa ||| | |||| |:| |||| ||| gCAGCTTCCACCCTGTGTCGAGCACAGGCCTGTCCa Cfap52; Wdr16 mmu-miR-770-3p 35 60 GGUCGAG---GUGCA-GUCCGGGUgc | ||| | | :|| |||| ||| CGAGCACAGGCCTGTCCAGGGCCAag

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cfap52 RAID00168833 mmu-miR-539-5p miRNA MIMAT0003169 Cfap52 mRNA 71860 Prediction 0.2202 Cfap52 RAID00247654 mmu-miR-488-3p miRNA MIMAT0003450 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID00404075 mmu-miR-142a-3p miRNA MIMAT0000155 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID00558726 mmu-miR-381-3p miRNA MIMAT0000746 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID00686995 mmu-miR-142a-5p miRNA MIMAT0000154 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID00824987 mmu-miR-340-5p miRNA MIMAT0004651 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID00825360 mmu-miR-6947-5p miRNA MIMAT0027794 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID01005666 mmu-miR-186-5p miRNA MIMAT0000215 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID01118725 mmu-miR-384-5p miRNA MIMAT0004745 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID01141238 mmu-miR-568 miRNA MIMAT0004892 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID01275347 mmu-miR-505-3p miRNA MIMAT0003513 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID01572065 mmu-miR-421-3p miRNA MIMAT0004869 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID01581484 mmu-miR-101a-3p miRNA MIMAT0000133 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID01656081 mmu-miR-30c-5p miRNA MIMAT0000514 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID01887664 mmu-miR-692 miRNA MIMAT0003471 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID01983621 mmu-miR-30b-5p miRNA MIMAT0000130 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID02305545 mmu-miR-30a-5p miRNA MIMAT0000128 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID02335110 mmu-miR-101b-3p miRNA MIMAT0000616 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID02554562 mmu-miR-6901-3p miRNA MIMAT0027703 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID02701926 mmu-miR-328-3p miRNA MIMAT0000565 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID02883849 mmu-miR-873a-5p miRNA MIMAT0004936 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID03186470 mmu-miR-7057-3p miRNA MIMAT0028019 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID03325969 mmu-miR-466m-3p miRNA MIMAT0014883 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID03602467 mmu-miR-30d-5p miRNA MIMAT0000515 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID03757654 mmu-miR-466o-3p miRNA MIMAT0014886 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID03818885 mmu-miR-1192 miRNA MIMAT0005850 Cfap52 mRNA 71860 Prediction 0.1828 Cfap52 RAID03945802 mmu-miR-30e-5p miRNA MIMAT0000248 Cfap52 mRNA 71860 Prediction 0.1828