DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Sorbs3; Scam1; Sh3d4 ATTTA 11-2212 2817-2821 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.!

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004522 mmu-miR-27b* 20410 Sorbs3 caagUGGUUAGUCGAUUC-GAGa ||||: | ||||| ||| ugagACCAGACCCCUAAGCCUCc 2 19 259 281 [mm9:14:70580696-70580718:-] 0.5651 126 0 -16.84 -0.3388 MIMAT0004535 mmu-miR-150* 20410 Sorbs3 gauAGGG-GGUC---CGGAC-AUGGUc ||:| :||| ||||| ||||| guuUCUCAUCAGCUUGCCUGCUACCAc 2 20 390 416 [mm9:14:70580561-70580587:-] 0.5645 125 0 -21.30 -0.2910 MIMAT0004541 mmu-miR-188-3p 20410 Sorbs3 acguuugGGACGUACACC-CUc |:| ||||||| || acaucugCUUUCAUGUGGAGAc 2 15 221 242 [mm9:14:70580735-70580756:-] 0.5692 122 0 -17.80 -0.2902 MIMAT0000230 mmu-miR-199a-3p 20410 Sorbs3 auugguuacACGUCUGA-UGACa ||| |||| |||| cauguacccUGCCGACUGACUGa 2 14 549 571 [mm9:14:70580406-70580428:-] 0.4868 121 0 -14.57 -0.1144 MIMAT0004545 mmu-miR-200b* 20410 Sorbs3 agGUUACGAC-GGGUCA-UUCUAc |||||||| :|||| ||||| ggCAAUGCUGAAUCAGUAAAGAUg 2 21 62 85 [mm9:14:70583380-70583403:-] 0.5022 143 0 -27.78 -0.5134 MIMAT0004635 mmu-miR-92a* 20410 Sorbs3 cauUA-CGGUGGUUAGGGGUGGa || |||| | | ||||||| uguAUAGCCAAC-ACCCCCACCa 2 20 84 105 [mm9:14:70583360-70583381:-] 0.5178 156 7 -22.59 -0.7864 MIMAT0004640 mmu-miR-325 20410 Sorbs3 aacUAUCCUCCACGAG-UUAUUu || ||:| | ||| ||||| cccAU-GGGGUUCCUCUAAUAAg 2 20 327 348 [mm9:14:70580629-70580650:-] 0.5610 125 0 -12.53 -0.1019 MIMAT0004667 mmu-miR-199b 20410 Sorbs3 auugguuacACGUCUGA-UGACa ||| |||| |||| cauguacccUGCCGACUGACUGa 2 14 549 571 [mm9:14:70580406-70580428:-] 0.4868 121 0 -14.57 -0.1144 MIMAT0002108 mmu-miR-467a-1* 20410 Sorbs3 cacauccacacacaUACAUAUa ||||||| cugaaucaguaaagAUGUAUAg 2 9 69 90 [mm9:14:70583375-70583396:-] 0.5178 140 7 -6.31 -0.2454 MIMAT0003895 mmu-miR-764-3p 20410 Sorbs3 ugucAACGGUGAUACCGGAGGa ||||| :| |||||||| cacuUUGCC-UUCUGGCCUCCa 2 19 414 434 [mm9:14:70580543-70580563:-] 0.5680 164 7 -22.74 -0.5167 MIMAT0003895 mmu-miR-764-3p 20410 Sorbs3 ugUCAACGGU-GAUACCGGAGGa :|| | | | | ||||||| cuGGUGGAGACCAAAGGCCUCCu 2 21 364 386 [mm9:14:70580591-70580613:-] 0.5610 147 7 -21.47 -0.3887 MIMAT0003895 mmu-miR-764-3p 20410 Sorbs3 ugucaacggugAUACCGGAGGa || ||||||| gaaccccugggUAGGGCCUCCc 2 12 527 548 [mm9:14:70580429-70580450:-] 0.5136 147 7 -20.92 -0.1466 MIMAT0003477 mmu-miR-669a 20410 Sorbs3 uguACUUGUACGUGUGUGUUGa ||| :: | :|||||||| gacUGACUGAG-GCACACAACu 2 20 562 582 [mm9:14:70580395-70580415:-] 0.4868 153 7 -18.73 -0.2008 MIMAT0003898 mmu-miR-760 20410 Sorbs3 aggggugucuGGGUCUCGGc |:||||||| gccuuuccuuCUCAGAGCCu 2 11 504 523 [mm9:14:70580454-70580473:-] 0.5405 146 7 -20.85 -0.4866 MIMAT0004825 mmu-miR-423-5p 20410 Sorbs3 uuUCAGAGCGAGAGACGGGGAGu || | | :|| | ||||||| acAGCCCCCUUCACCGCCCCUCa 2 22 191 213 [mm9:14:70580764-70580786:-] 0.5692 161 7 -19.68 -0.7647 MIMAT0003478 mmu-miR-467b* 20410 Sorbs3 cacaaccacacacaUACAUAUa ||||||| cugaaucaguaaagAUGUAUAg 2 9 69 90 [mm9:14:70583375-70583396:-] 0.5178 140 7 -6.31 -0.2454 MIMAT0003496 mmu-miR-706 20410 Sorbs3 aaaaaacucuguccCAAAGAGa ||||||| aaaggccuccucccGUUUCUCa 2 9 376 397 [mm9:14:70580580-70580601:-] 0.5610 140 7 -8.51 -0.2045 MIMAT0004842 mmu-miR-879 20410 Sorbs3 ccgaaUCUCGAUAUUCGGAGa ||| | |||||||| agaccAGACCCCUAAGCCUCc 2 17 261 281 [mm9:14:70580696-70580716:-] 0.5651 156 7 -14.25 -0.3099 MIMAT0004842 mmu-miR-879 20410 Sorbs3 ccgaaucucGAUAUUCGGAGa || ||||||| caacuuuccCUCCAAGCCUCc 2 13 127 147 [mm9:14:70580830-70580850:-] 0.5692 144 7 -13.99 -0.2313 MIMAT0004848 mmu-miR-883a-5p 20410 Sorbs3 cauuGACGAUGAAGAG-AGUCGu || | ::||||| ||||| ccucCUCCCGUUUCUCAUCAGCu 2 19 381 403 [mm9:14:70580574-70580596:-] 0.5645 130 0 -16.39 -0.3167 MIMAT0004887 mmu-miR-467d* 20410 Sorbs3 cacauccacacacaUACAUAUa ||||||| cugaaucaguaaagAUGUAUAg 2 9 69 90 [mm9:14:70583375-70583396:-] 0.5178 140 7 -6.31 -0.2454 MIMAT0004898 mmu-miR-654-3p 20410 Sorbs3 uuccacuaccagucGUCUGUAu ||||||| ccgccccucaaauaCAGACAUc 2 9 204 225 [mm9:14:70580752-70580773:-] 0.5692 140 7 -9.66 -0.6498 MIMAT0004861 mmu-miR-877 20410 Sorbs3 gggacGCGGUA----GAGGAGAUg | |||| :||||||| uucacCCCCAUGGGGUUCCUCUAa 2 16 321 344 [mm9:14:70580633-70580656:-] 0.5610 142 7 -19.78 -0.4729 MIMAT0005294 mmu-miR-467e* 20410 Sorbs3 uauauccacacacaUACAUAUa ||||||| cugaaucaguaaagAUGUAUAg 2 9 69 90 [mm9:14:70583375-70583396:-] 0.5178 140 7 -6.31 -0.2454 MIMAT0007873 mmu-miR-1896 20410 Sorbs3 gaGGAGUGGGUG-GUAGUC-UCUc |:|| |: :| :||||| ||| aaCUUCCCUGGCUUAUCAGAAGAu 2 21 579 602 [mm9:14:70580375-70580398:-] 0.4868 123 0 -18.18 -0.5347 MIMAT0009393 mmu-miR-1930 20410 Sorbs3 ugCGACGUCCAUGAUA-CCUCCa || |:| | ||||| ||||| gaGCAGUA-GCACUAUGGGAGGg 2 21 43 64 [mm9:14:70580913-70580934:-] 0.5740 130 0 -19.71 -0.1038 MIMAT0009398 mmu-miR-1934 20410 Sorbs3 ucuccugcuucguccCCUGGUCu ||||||| ggguuccucuaauaaGGACCAGc 2 9 333 355 [mm9:14:70580622-70580644:-] 0.5610 140 7 -13.78 -0.4992 MIMAT0009402 mmu-miR-1938 20410 Sorbs3 cuGGCUUGAUGUUCAGGGUGGc ::||| | |:| ||||||| ccUUGAAGUCCGAUUCCCACCc 2 21 146 167 [mm9:14:70580810-70580831:-] 0.5692 164 7 -19.64 -0.4098 MIMAT0009407 mmu-miR-1942 20410 Sorbs3 guuGGUCUACUUCUGUAGACu :|| || ||||||||| cccUCAAAUACAGACAUCUGc 2 19 208 228 [mm9:14:70580749-70580769:-] 0.5692 162 7 -15.84 -0.3131 MIMAT0009411 mmu-miR-1306 20410 Sorbs3 guagugguGGUCUCGGUUGCa :::||||||||| auggcaguUUGGAGCCAACGa 2 14 10 30 [mm9:14:70580947-70580967:-] 0.6018 153 7 -20.27 -0.4025 MIMAT0009418 mmu-miR-669l 20410 Sorbs3 uguauauguacgUGUGUGUUGa :|||||||| cgacugacugagGCACACAACu 2 11 561 582 [mm9:14:70580395-70580416:-] 0.4868 146 7 -17.21 -0.2008 MIMAT0009419 mmu-miR-669m 20410 Sorbs3 uauacaaaCACACCUACAUAUa || |||||||| cugaaucaGUAAAGAUGUAUAg 2 15 69 90 [mm9:14:70583375-70583396:-] 0.5178 146 7 -8.61 -0.2432 MIMAT0009421 mmu-miR-669o 20410 Sorbs3 uguAUUUGUACGUGUGUGUUGAu |:| :: | :||||||||| gacUGACUGAG-GCACACAACUu 2 21 562 583 [mm9:14:70580394-70580415:-] 0.4868 154 7 -18.06 -0.2206 MIMAT0009423 mmu-miR-1952 20410 Sorbs3 gucuuccucCCACCUCu ||||||| uucuacccuGGUGGAGa 2 9 357 373 [mm9:14:70580604-70580620:-] 0.5610 140 7 -14.89 -0.3778 MIMAT0009424 mmu-miR-1953 20410 Sorbs3 guCUUCGGACUC-UUGAAAGGGu ||: || || ||||||||| caGAGACCCCAGCAACUUUCCCu 2 21 115 137 [mm9:14:70580840-70580862:-] 0.5692 163 7 -24.11 -0.4650 MIMAT0009425 mmu-miR-1954 20410 Sorbs3 uugucCCAGAGU--GAGACGUCa | || || :||||||| ccuguGCUCCCAGCUUCUGCAGa 2 17 96 118 [mm9:14:70580859-70580881:-] 0.5692 147 7 -14.54 -0.3892 MIMAT0009430 mmu-miR-1957 20410 Sorbs3 caguauAC-GA-GAUGGUGAc || || |||||||| ucagcuUGCCUGCUACCACUu 2 14 398 418 [mm9:14:70580559-70580579:-] 0.5645 147 7 -17.63 -0.2780 MIMAT0009431 mmu-miR-1958 20410 Sorbs3 ugAAU-GACGAAGGUGAAA-GGAu ||: ||||| ||||||| ||| gcUUGCCUGCUACCACUUUGCCUu 2 21 401 424 [mm9:14:70580553-70580576:-] 0.5645 143 0 -26.47 -0.1202 MIMAT0009435 mmu-miR-1962 20410 Sorbs3 uacACAGGG-UCACGGUCG-GAGa || ||: | | ||||| ||| ugcUGCCCUAAUUCCCAGCUCUCc 2 20 624 647 [mm9:14:70580330-70580353:-] 0.5489 122 0 -17.87 -0.1309 MIMAT0009440 mmu-miR-1967 20410 Sorbs3 cguagaAGAGGGGUC------CUAGGAGu ||||||||| ||||||| cccagcUCUCCCCAGUGUCCAGAUCCUCu 2 18 637 665 [mm9:14:70580312-70580340:-] 0.5489 156 7 -29.60 -0.5020 MIMAT0009441 mmu-miR-1968 20410 Sorbs3 ucAGGUGG--UAGGAAUUGUCG-ACGu ||| || |:|| | |||| ||| ccUCCUCCCGUUUCUCAUCAGCUUGCc 2 23 381 407 [mm9:14:70580570-70580596:-] 0.5645 125 0 -18.72 -0.2923 MIMAT0009445 mmu-miR-1274a 20410 Sorbs3 accGCGGACUUGUCCCUGGACu | ||| || ||||||| agcCUCCUCCCCA-GGACCUGu 2 20 80 100 [mm9:14:70580877-70580897:-] 0.5692 149 7 -19.94 -0.1297 MIMAT0012771 mmu-miR-432 20410 Sorbs3 gacGGGU-GACUAGA-UGAGGUUCu |||| | |:| ||||||| gacCCCAGCAACUUUCCCUCCAAGc 2 21 119 143 [mm9:14:70580834-70580858:-] 0.5692 146 7 -17.25 -0.1605 MIMAT0014853 mmu-miR-3072 20410 Sorbs3 ucUUCCGAAGGACCUCCCC-CGu :||| | | ||||||| || acGAGGAU--CGGGAGGGGAGCa 2 21 27 47 [mm9:14:70580930-70580950:-] 0.5789 121 0 -26.03 -0.4878 MIMAT0015646 mmu-miR-3474 20410 Sorbs3 cuuAGGUG-CAGAGGA-GGGUCCc ||||: | ||||| |||||| ccuUCCAUAGCCUCCUCCCCAGGa 2 20 72 95 [mm9:14:70580882-70580905:-] 0.5692 138 6 -28.79 -0.1169 MIMAT0000125 mmu-miR-23b 20410 Sorbs3 ccauuAGGGACCGUUAC-ACUa || |||||||| ||| ggacuUCAGUGGCAAUGCUGAa 2 17 52 73 [mm9:14:70583392-70583413:-] 0.4775 128 0 -18.29 -0.2266 MIMAT0000532 mmu-miR-23a 20410 Sorbs3 ccuuuAGGGACCGUUAC-ACUa || |||||||| ||| ggacuUCAGUGGCAAUGCUGAa 2 17 52 73 [mm9:14:70583392-70583413:-] 0.4775 128 0 -20.47 -0.2266 MIMAT0000540 mmu-miR-93 20410 Sorbs3 gauGGACGUGCUU---GUCG-UGAAAc :||||| :| |||| ||||| gcuUCUGCAGAGACCCCAGCAACUUUc 2 21 108 134 [mm9:14:70580843-70580869:-] 0.5692 123 0 -19.70 -0.1378 MIMAT0003151 mmu-miR-378 20410 Sorbs3 ggAAGACUGAG--GUUCAG-GUCa ||| || | |||||| ||| gaUUCCCACCCCGCAAGUCACAGg 2 20 157 180 [mm9:14:70580797-70580820:-] 0.5692 122 0 -14.64 -0.3336 MIMAT0000747 mmu-miR-382 20410 Sorbs3 gcuUAGGUGGUGCU-UGUU-GAAg ||::|| : || |||| ||| uucAUUUACAGGGAGACAAGCUUg 2 20 602 625 [mm9:14:70580352-70580375:-] 0.5178 122 0 -9.87 -0.3129 MIMAT0004853 mmu-miR-874 20410 Sorbs3 agccAGGGAGCCC---GGUC-CCGUc |||| :||| :||| |||| ggucUCCCGUGGGACUUCAGUGGCAa 2 19 41 66 [mm9:14:70583399-70583424:-] 0.4775 121 0 -26.39 -0.3703

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G005081 Sorbs3 Mus musculus 20410

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Sorbs3 mmu-miR-879 beg:263 end:281 pic:3' CCGAATCTCGATATTCGGAGA 5'& ||| | |||||||| &5' -----AGACCCCTAAGCCTC- 3' Sorbs3 mmu-miR-669a beg:563 end:583 pic:3' TGTACTTGTACG-TGTGTGTTGA 5'& .|| || .||||||||| &5' -----GAC-TGAGGCACACAACT 3' Sorbs3 mmu-miR-669l beg:564 end:583 pic:3' TGTATATGTACG-TGTGTGTTGA 5'& || || .||||||||| &5' ------AC-TGAGGCACACAACT 3' Sorbs3 mmu-miR-1942 beg:209 end:228 pic:3' GTTGGTCTACTTCTGTAGACT 5'& .|| || ||||||||| &5' ---TCAAATACAGACATCTG- 3' Sorbs3 mmu-miR-669o beg:566 end:583 pic:3' TGTATTTGTACG-TGTGTGTTGAT 5'& || .||||||||| &5' ---------TGAGGCACACAACT- 3' Sorbs3 mmu-miR-2141 beg:454 end:468 pic:3' TTGAAAAGAC-TGTGGAGGA 5'& | ||||||||| &5' ---------GAACACCTCCT 3' Sorbs3 mmu-miR-145star beg:430 end:448 pic:3' GTTCTTGTC-ATAAAGGTCCTTA 5'& ||| |. ||||||| &5' ------CAGCTGGG-CCAGGAA- 3' Sorbs3 mmu-miR-3475 beg:417 end:436 pic:3' AAGTTTGGT--ACACGGAGGTCT 5'& .|| || |||||||| &5' -----GCCTTCTG-GCCTCCAG- 3' Sorbs3 mmu-miR-151-5p beg:451 end:469 pic:3' TGATCTGACACTC-----GAGGAGCT 5'& |||.| ||||||| &5' --------GTGGGAACACCTCCTCG- 3' Sorbs3 mghv-miR-M1-4 beg:452 end:469 pic:3' ATCTTATTGTGCACGAGGAGCT 5'& |.|.| |||| ||||||| &5' TGGGA--ACAC---CTCCTCG- 3' Sorbs3 mcmv-miR-m01-3 beg:187 end:207 pic:3' AGCTCCGTTGTCA-GCGAAGTGGC 5'& .|||| | |||||||| &5' -------GACAGCCCCCTTCACCG 3' Sorbs3 mmu-miR-1306 beg:15 end:30 pic:3' GTAGTGGTGGTCTCGGTTGCA 5'& . ||||||||| &5' --------TTGGAGCCAACG- 3' Sorbs3 mmu-miR-423-5p beg:195 end:214 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& | .|| | |||||||| &5' -------CCTTCACCGCCCCTCA 3' Sorbs3 mmu-miR-2141 beg:125 end:149 pic:3' TTGAAAA-GACTG-TGGAGGA 5'& |||||| || .|||||| &5' AACTTTCCCTCCAAGCCTCCT 3' Sorbs3 mmu-miR-764-3p beg:396 end:424 pic:3' TGTC-AACGG-TGATAC-----CGGAGGA 5'& ||| ||||| .||| ||||.| &5' -CAGCTTGCCTGCTACCACTTTGCCTTC- 3' Sorbs3 mmu-miR-764-3p beg:415 end:434 pic:3' TGTCAACGGTGATACCGGAGGA 5'& ||||| |||||||| &5' ----TTGCCTTC-TGGCCTCC- 3' Sorbs3 mmu-miR-2141 beg:509 end:527 pic:3' TTGAAAAGACTG-TGGAGGA 5'& |||| .|||||| &5' -----TTCTCAGAGCCTCCT 3' Sorbs3 mmu-miR-764-3p beg:369 end:387 pic:3' TGTCAAC-GGTGATACCGGAGGA 5'& | ||| |||||||| &5' ------GACCAAA--GGCCTCCT 3' Sorbs3 mmu-miR-1952 beg:363 end:374 pic:3' GTCTTCCTCCCACCTCT 5'& |||||||| &5' ---------GGTGGAGA 3' Sorbs3 mcmv-miR-m01-3 beg:303 end:327 pic:3' AGCTCCG--TTGTCAGCGAAGTGGC 5'& |.|| ..| |||||||||| &5' --GGGGACTGGCTCTCGCTTCACC- 3' Sorbs3 mcmv-miR-M23-2 beg:273 end:291 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& || || |||||| &5' --GCCT--CCAAC-CCCCCA- 3' Sorbs3 mcmv-miR-M23-2 beg:415 end:435 pic:3' GGCGAACTGGCT--CCGGGGGTA 5'& ||| .|| ||||.||| &5' ---CTTTGCCTTCTGGCCTCCA- 3' Sorbs3 mghv-miR-M1-8 beg:678 end:697 pic:3' CTGGTTTGGGGGTCACTCACGA 5'& |||. | |||.|||| &5' ----AAATAAAC-GTGGGTGC- 3' Sorbs3 mmu-let-7a beg:484 end:502 pic:3' TTGATATGT-TGGATGATGGAGT 5'& ||| .||| |.||||| &5' ------ACAGGCCT--TGCCTCA 3' Sorbs3 mmu-let-7c beg:484 end:502 pic:3' TTGGTATGT-TGGATGATGGAGT 5'& ||| .||| |.||||| &5' ------ACAGGCCT--TGCCTCA 3' Sorbs3 mmu-miR-1274a beg:78 end:100 pic:3' ACCGCGGACTT---GTCCCTGGACT 5'& |||| || ||||||| &5' ----GCCTCCTCCCCA-GGACCTG- 3' Sorbs3 mmu-miR-130bstar beg:48 end:67 pic:3' TCATCACGTTGT-CCCTTTCTCA 5'& ||| .| ||||..||| &5' ------GCACTATGGGAGGGAG- 3' Sorbs3 mmu-miR-133a beg:248 end:269 pic:3' GTCGACC-AACTTCCCCTGGTTT 5'& .|| |||| |||||.| &5' -GGCCTTATTGA----GACCAGA 3' Sorbs3 mmu-miR-133a beg:361 end:379 pic:3' GTCGACCAACTTCCCCTGGTTT 5'& ||||| || ||||||| &5' ---CTGGT----GGAGACCAAA 3' Sorbs3 mmu-miR-133b beg:248 end:269 pic:3' ATCGACC-AACTTCCCCTGGTTT 5'& .|| |||| |||||.| &5' -GGCCTTATTGA----GACCAGA 3' Sorbs3 mmu-miR-133b beg:361 end:379 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& ||||| || ||||||| &5' ---CTGGT----GGAGACCAAA 3' Sorbs3 mmu-miR-139-3p beg:229 end:251 pic:3' GAGGTTGTCC-CGGCGCAGAGGT 5'& |.|| || | .||||||| &5' -TTCATGTGGAGAC-TGTCTCCA 3' Sorbs3 mmu-miR-145star beg:595 end:616 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& |||| |||| ||||.| &5' -AAGATTC--ATTTACAGGGA- 3' Sorbs3 mmu-miR-150star beg:94 end:116 pic:3' GATA-GGGGGTCCGGACATGGTC 5'& ||.| |.|||| ||.| |.| &5' CTGTGCTCCCA-GCTTCTGC--- 3' Sorbs3 mmu-miR-1896 beg:99 end:121 pic:3' GAGGAGTGGGTGGTAGTCTCTC 5'& |||| || |. |.. |||||| &5' CTCC-CAGCTTCTG-CAGAGA- 3' Sorbs3 mmu-miR-1934 beg:248 end:269 pic:3' TCTCCTGCTTCGTCC-------C-CTGGTCT 5'& |||| | ||||||| &5' -----------CAGGCCTTATTGAGACCAGA 3' Sorbs3 mmu-miR-1938 beg:147 end:167 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& ..||| | |.| ||||||| &5' --TTGAAGTCCGATTCCCACC- 3' Sorbs3 mmu-miR-1940 beg:413 end:435 pic:3' TTGACGAGGTGGAAGAGTCAGGAGGTA 5'& ||. |||||| .| |||||| &5' -----CTTTGCCTTCT-GG-CCTCCA- 3' Sorbs3 mmu-miR-1953 beg:115 end:137 pic:3' GTCTTCGGACTC-TTGAAAGGGT 5'& ||| || || ||||||||| &5' -AGAGACCCCAGCAACTTTCCC- 3' Sorbs3 mmu-miR-1953 beg:493 end:513 pic:3' GTCTTCGGAC-TCTTGAAAGGGT 5'& |||| || ||||||. &5' -----GCCTCAAGGCCTTTCCT- 3' Sorbs3 mmu-miR-1954 beg:99 end:118 pic:3' TTGTCCCAGAG---TG-AGACGTCA 5'& ||| .| ||||||| &5' --------CTCCCAGCTTCTGCAG- 3' Sorbs3 mmu-miR-1954 beg:299 end:321 pic:3' TTGTCCCAGAGTGAGA-CGTCA 5'& ||..||| || .|||| || &5' AATGGGGACTGGCTCTCGC--- 3' Sorbs3 mmu-miR-1956 beg:580 end:604 pic:3' AGGCGACTGAGTCGGGACCTGA 5'& ||| |||.||.| | ||.| &5' TCC-CTGGCTTATCAGAAGATT 3' Sorbs3 mmu-miR-1957 beg:395 end:418 pic:3' CAGTAT-ACGA--GATGGTGAC 5'& ||| ||| |||||||| &5' -TCAGCTTGCCTGCTACCACT- 3' Sorbs3 mmu-miR-1958 beg:492 end:513 pic:3' TGAATGACGAAGGT---GAAAGGAT 5'& .||| || ||||||| &5' -----TTGCCTCAAGGCCTTTCCT- 3' Sorbs3 mmu-miR-1959 beg:275 end:301 pic:3' GAGGTGAC----TCGATGTAGGGG 5'& ||||| ||| |..||||| &5' CTCCAACCCCCCAGC-ATGTCCCC 3' Sorbs3 mmu-miR-1967 beg:640 end:665 pic:3' CGTAGAAGAGGGGTC------CTAGGAGT 5'& ||||||||| ||||||| &5' ------TCTCCCCAGTGTCCAGATCCTC- 3' Sorbs3 mmu-miR-1967 beg:501 end:525 pic:3' CGTAGAAGAGGGGTCCTAGGAGT 5'& || |.| ||.|.||| |||| &5' GCCTTTCCTTCTCAGAG-CCTC- 3' Sorbs3 mmu-miR-1970 beg:74 end:97 pic:3' GTTTCGGAT-AGGGGTCACTGTGT 5'& || ||||| ||||||| ||| &5' CATAGCCTCCTCCCCAG-GAC--- 3' Sorbs3 mmu-miR-200cstar beg:522 end:544 pic:3' GGTTTGTGACGACCCATTCTGC 5'& | ||| | |||||||.|.| &5' CTGAAC-CC-CTGGGTAGGGC- 3' Sorbs3 mmu-miR-2134 beg:78 end:97 pic:3' CGTGGGGCAAAGGGTTCTG 5'& .||.| ||||.||| &5' --GCCTCCTC-CCCAGGAC 3' Sorbs3 mmu-miR-2135 beg:365 end:385 pic:3' CAAAGCCG--GGGTTCTGGAGA 5'& .|| || |||.|||| &5' ----TGGAGACCAAAGGCCTC- 3' Sorbs3 mmu-miR-2135 beg:493 end:510 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& |||.||||.|||.| &5' ------GCCTCAAGGCCTTT 3' Sorbs3 mmu-miR-2145 beg:540 end:561 pic:3' TTGGTCCGGG------C-TGGGACGA 5'& ||||. | ||||||| &5' -----GGCCTCCCCATGTACCCTGC- 3' Sorbs3 mmu-miR-2146 beg:229 end:251 pic:3' GTGTACCTTGGGAAGAGGTG 5'& ||..||||. |. |||||| &5' CATGTGGAGACTGTCTCCA- 3' Sorbs3 mmu-miR-214star beg:166 end:183 pic:3' CGTGTCGTTCACATCTGTCCGT 5'& |||||| ||||||| &5' -----GCAAGTC---ACAGGCA 3' Sorbs3 mmu-miR-22 beg:0 end:20 pic:3' TGTCAAGAAGTTGACCGTCGAA 5'& . | ||| || ||||||.|| &5' GTGG-TCTCCA--TGGCAGTTT 3' Sorbs3 mmu-miR-223 beg:549 end:569 pic:3' ACCCCATAAACTGTTTGACTGT 5'& ||| .| .|||||| &5' ----GTACCCTGCCGACTGAC- 3' Sorbs3 mmu-miR-24 beg:422 end:444 pic:3' GACAAGGACGAC--TTGACTCGGT 5'& |||. || |.|||.|||| &5' ---TTCTGGCCTCCAGCTGGGCCA 3' Sorbs3 mmu-miR-2861 beg:476 end:496 pic:3' GGCGGGCGGCGGTCCGGGG 5'& |||| .| ||||||.. &5' --GCCCAATGACAGGCCTT 3' Sorbs3 mmu-miR-296-3p beg:625 end:647 pic:3' CCTCTCGGAGGT---GGGTTGGGAG 5'& ||| |.| ||||.|.||| &5' -----GCC-CTAATTCCCAGCTCTC 3' Sorbs3 mmu-miR-29bstar beg:335 end:356 pic:3' ATTTGGTGGTATACTTTGGTCG 5'& || |.| ..|||||| &5' ----CCTCTAATAAGGACCAGC 3' Sorbs3 mmu-miR-3099 beg:632 end:653 pic:3' AGGGGTTGGAGAGAGATCGGAT 5'& |.||||. ||||| | ||. &5' TTCCCAG-CTCTCCCCAGT--- 3' Sorbs3 mmu-miR-30c-1star beg:149 end:165 pic:3' CCTCATTTGTTGGGA-GAGGGTC 5'& | || .||||| &5' ---------AGTCCGATTCCCA- 3' Sorbs3 mmu-miR-339-5p beg:597 end:616 pic:3' GCACTCGAGGACCTCCTGTCCCT 5'& || .|| ||||||| &5' ---GA-TTCATTT---ACAGGGA 3' Sorbs3 mmu-miR-343 beg:48 end:68 pic:3' AGACCCGTGTA--CTTCCCTCT 5'& |||| |.||||||| &5' -----GCACTATGGGAGGGAGA 3' Sorbs3 mmu-miR-3470a beg:348 end:371 pic:3' GGTCGGACCAGATGTT-TCACT 5'& ||||||| ||||| .|||. &5' CCAGCCT--TCTACCCTGGTGG 3' Sorbs3 mmu-miR-3470b beg:348 end:371 pic:3' GGTCGGACCAGATGTC-TCACT 5'& ||||||| ||||| .|||. &5' CCAGCCT--TCTACCCTGGTGG 3' Sorbs3 mmu-miR-382 beg:563 end:585 pic:3' GCTTAGGTGGTGCTTGTTGAAG 5'& || . ||| |||||||| &5' -GACTGAGGCAC--ACAACTTC 3' Sorbs3 mmu-miR-432 beg:123 end:143 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& || ||| |. ||||||| &5' --GCA-ACT--TTCCCTCCAAG- 3' Sorbs3 mmu-miR-449a beg:613 end:631 pic:3' TGGTCGATTGTTAT-GTGACGGT 5'& .|||| ..||||| &5' -------GACAAGCTTGCTGCC- 3' Sorbs3 mmu-miR-449b beg:617 end:631 pic:3' CGGTCGATTGTTGTGACGGA 5'& |||| ..||||| &5' ---AGCT-----TGCTGCC- 3' Sorbs3 mmu-miR-450a-3p beg:74 end:93 pic:3' TACTTACGTTTCGT---AGGGGTTA 5'& || ||| ||||||. &5' -------CATAGCCTCCTCCCCAG- 3' Sorbs3 mmu-miR-450a-3p beg:637 end:653 pic:3' TACTTACGTTTCGT-AGGGGTTA 5'& ||| ||||||.| &5' ----------AGCTCTCCCCAGT 3' Sorbs3 mmu-miR-450b-3p beg:621 end:642 pic:3' TACGTACGTTTTACAAGGGTTA 5'& ||| ||| ||||||. &5' -TGC-TGCCCTAA-TTCCCAG- 3' Sorbs3 mmu-miR-470 beg:429 end:448 pic:3' TGAGTGGTCACGGTCAGGTTCTT 5'& | ||| || | |||.||| &5' ---CTCCA--GCTGGGCCAGGAA 3' Sorbs3 mmu-miR-485 beg:98 end:114 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& .| |||||.||| &5' ---------GCTCCCAGCTTCT 3' Sorbs3 mmu-miR-486 beg:38 end:62 pic:3' GAGCCC-CGTCGA-GTCATGTCCT 5'& ||| ||||. || ||..||| &5' ---GGGAGCAGTAGCACTATGGGA 3' Sorbs3 mmu-miR-491 beg:0 end:12 pic:3' GGAGTACCTTCCCAAGGGGTGA 5'& || ||.|||. &5' -----------GG-TCTCCAT- 3' Sorbs3 mmu-miR-491 beg:529 end:552 pic:3' GGAGTACCT-TCCCA-AGGGGTGA 5'& || | |||. |||| ||||||. &5' CC-CCTGGGTAGGGCCTCCCCAT- 3' Sorbs3 mmu-miR-539 beg:377 end:397 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& .|| .|||||| &5' ----GCCTCCTCCCGTTTCTC- 3' Sorbs3 mmu-miR-544 beg:98 end:120 pic:3' CTCGAA---CGATTTTTACGTCTTA 5'& ||| ||| ||||||. &5' --GCTCCCAGCTTC---TGCAGAG- 3' Sorbs3 mmu-miR-654-5p beg:572 end:597 pic:3' TGTGTACAAGACGTCGAATGGT 5'& ||||| ||| ..|||||.|| &5' ACACAACTTCCCTGGCTTATCA 3' Sorbs3 mmu-miR-666-5p beg:389 end:412 pic:3' CCGAGAGT-GTCGACACGGGCGA 5'& .||||| ||||| ||||.||| &5' --TTCTCATCAGCT-TGCCTGCT 3' Sorbs3 mmu-miR-670 beg:596 end:616 pic:3' AAGTGGTGTATGTGA--GTCCCTA 5'& | || ||.| |||||| &5' ------AGATTCATTTACAGGGA- 3' Sorbs3 mmu-miR-670 beg:684 end:701 pic:3' AAGTGGTGTA--TGTGAGTCCCTA 5'& ||.| . | |||||| &5' ------ACGTGGGTGC-CAGGGA- 3' Sorbs3 mmu-miR-678 beg:540 end:575 pic:3' GGAGGT---CA-GGAACG------TGGCTCTG 5'& ||||| || || ||| ||.|||.| &5' CCTCCCCATGTACCCTGCCGACTGACTGAGGC 3' Sorbs3 mmu-miR-686 beg:432 end:452 pic:3' AGAAGTGGCA-GACCCTTCGTTA 5'& .|.| | |||||||| &5' -----GCTGGGCCAGGAAGCAA- 3' Sorbs3 mmu-miR-686 beg:30 end:50 pic:3' AGAAGTGGCAGACCCTTCGTTA 5'& |.|| |||.||||.| &5' -----ATCGGGAGGGGAGCAGT 3' Sorbs3 mmu-miR-691 beg:426 end:448 pic:3' AAAAGACGGAGA--GAA---GTCCTTA 5'& ||||| || |||||| &5' ------GCCTCCAGCTGGGCCAGGAA- 3' Sorbs3 mmu-miR-692 beg:607 end:618 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& ||..|||| &5' ------------CAGGGAGA- 3' Sorbs3 mmu-miR-704 beg:38 end:59 pic:3' GATCCTCGTC-TCGTG-TACAGA 5'& .||||||| ||||| ||| &5' --GGGAGCAGTAGCACTATG--- 3' Sorbs3 mmu-miR-758 beg:167 end:179 pic:3' ATCACCTGGTCCAGTGTTT 5'& || ||||||. &5' --------CAAGTCACAG- 3' Sorbs3 mmu-miR-760 beg:502 end:523 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& ||.. |.||||||| &5' -CCTTTCCTTCTCAGAGCC- 3' Sorbs3 mmu-miR-760 beg:108 end:128 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& ||. || |||||| ||| &5' TCTGCAGAGACCCC-AGC-- 3' Sorbs3 mmu-miR-762 beg:625 end:650 pic:3' CGAGACAGGGCC--GGGGTCGGGG 5'& ||| ||| .||||||.|. &5' ---CTG-CCCTAATTCCCAGCTCT 3' Sorbs3 mmu-miR-877 beg:404 end:425 pic:3' GGGACGC-GGT-AGA-GGAGATG 5'& ||||| ||| |.| |||. &5' -CCTGCTACCACTTTGCCTT--- 3' Sorbs3 mmu-miR-9 beg:363 end:381 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& | |.|| .|||||||. &5' -------GGTGGA-GACCAAAGG 3' Sorbs3 mmu-miR-92astar beg:146 end:167 pic:3' CATTACGGT-GGTTAGGGGTGGA 5'& || ||.||.|||||| &5' ----TGAAGTCCGATTCCCACC- 3' Sorbs3 mmu-miR-96 beg:686 end:701 pic:3' TCGTTTTTACACGATCACGGTTT 5'& ||| .||||||.. &5' ---------GTG--GGTGCCAGG 3' Sorbs3 mmu-miR-1962 beg:130 end:147 pic:3' TACACAGGGTCACGG-TCGGAGA 5'& |||| || |||||| &5' -----TCCCT---CCAAGCCTC- 3' Sorbs3 mmu-miR-485 beg:130 end:147 pic:3' CTTAAGTAGTGCCGG-TCGGAGA 5'& || | || |||||| &5' -------TC-CCTCCAAGCCTC- 3' Sorbs3 mmu-miR-1962 beg:261 end:281 pic:3' TACACAGGGTCACGG---TCGGAGA 5'& |||| || |||||| &5' -------CCAGACCCCTAAGCCTC- 3' Sorbs3 mmu-miR-764-3p beg:262 end:282 pic:3' TGTCAACGGTGATACCGGAGGA 5'& ||| || ||| |||||| &5' -CAGAC-CC-CTAA-GCCTCC- 3' Sorbs3 mmu-miR-485 beg:330 end:359 pic:3' CTTAAGTAGTG----CC-GGTCGGAGA 5'& |..||| || || |||||||. &5' GGGTTCCTCTAATAAGGACCAGCCTT- 3' Sorbs3 mmu-miR-1962 beg:332 end:359 pic:3' TACACAGGG-------TCACGGTCGGAGA 5'& ||.|| || |||||||. &5' ----GTTCCTCTAATAAGGACCAGCCTT- 3' Sorbs3 mmu-miR-705 beg:348 end:364 pic:3' ACGGGTGGGGTGGAGGGTGG 5'& ||| .|||.|.||| &5' -----ACCA-GCCTTCTACC 3' Sorbs3 mmu-miR-879 beg:363 end:385 pic:3' CCGAATCTCGATA-TTCGGAGA 5'& ||. .||| |.||||| &5' GGT--GGAGACCAAAGGCCTC- 3' Sorbs3 mmu-miR-705 beg:377 end:400 pic:3' ACGGGTG-GGGTGGAGGGTGG 5'& ||| | |||. ||.||.| &5' -GCCTCCTCCCGTTTCTCATC 3' Sorbs3 mmu-miR-1962 beg:410 end:433 pic:3' TACACAGG-GTCACGG----TCGGAGA 5'& || | |||| .||||| &5' ------CCACTTTGCCTTCTGGCCTC- 3' Sorbs3 mmu-miR-485 beg:411 end:433 pic:3' CTTAAGTAGTGC--CGG----TCGGAGA 5'& ||| ||| .||||| &5' --------CACTTTGCCTTCTGGCCTC- 3' Sorbs3 mmu-miR-879 beg:500 end:525 pic:3' CC-GAATCTC-GATATTCGGAGA 5'& || ||| || .|||||| &5' GGCCTTTCCTTCTCAGAGCCTC- 3' Sorbs3 mmu-miR-1962 beg:529 end:547 pic:3' TACACAGGGTCACGG-TCGGAGA 5'& || | |. .||||| &5' ------CCTGG-GTAGGGCCTC- 3' Sorbs3 mmu-miR-485 beg:533 end:547 pic:3' CTTAAGTAGTGCCGG-TCGGAGA 5'& ||. .||||| &5' -----------GGTAGGGCCTC- 3' Sorbs3 mmu-miR-705 beg:539 end:558 pic:3' ACGGGTGGGGTGGA-GGGTGG 5'& |||. |||||. | ||| &5' -GCCT-CCCCATGTACCC--- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Sorbs3 RAID00024952 mmu-miR-7035-5p miRNA MIMAT0027974 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID00180981 mmu-miR-23a-3p miRNA MIMAT0000532 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID00215279 mmu-miR-764-3p miRNA MIMAT0003895 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID00279642 mmu-miR-185-3p miRNA MIMAT0016996 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID00404048 mmu-miR-7076-5p miRNA MIMAT0028058 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID00772240 mmu-miR-382-5p miRNA MIMAT0000747 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID00829449 mmu-miR-874-3p miRNA MIMAT0004853 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID00858495 mmu-miR-3095-3p miRNA MIMAT0014912 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID00971949 mmu-miR-760-3p miRNA MIMAT0003898 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID01029362 mmu-miR-7081-5p miRNA MIMAT0028068 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID01115085 mmu-miR-1938 miRNA MIMAT0009402 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID01133153 mmu-miR-1952 miRNA MIMAT0009423 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID01227981 mmu-miR-23b-3p miRNA MIMAT0000125 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID01424778 mmu-miR-6992-5p miRNA MIMAT0027886 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID01469301 mmu-miR-6388 miRNA MIMAT0025135 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID01471432 mmu-miR-7062-5p miRNA MIMAT0028028 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID01475832 mmu-miR-7226-5p miRNA MIMAT0028420 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID01510983 mmu-miR-1249-5p miRNA MIMAT0014804 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID01516944 mmu-miR-677-3p miRNA MIMAT0017246 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID01906554 mmu-miR-7075-5p miRNA MIMAT0028056 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID01937057 mmu-miR-6980-5p miRNA MIMAT0027862 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID01945508 mmu-miR-7243-5p miRNA MIMAT0029910 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID02108391 mmu-miR-7048-5p miRNA MIMAT0028000 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID02240187 mmu-miR-6914-5p miRNA MIMAT0027728 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID02242971 mmu-miR-133a-3p miRNA MIMAT0000145 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID02259308 mmu-miR-7030-5p miRNA MIMAT0027964 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID02296101 mmu-miR-7688-5p miRNA MIMAT0029906 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID02426489 mmu-miR-542-3p miRNA MIMAT0003172 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID02468684 mmu-miR-452-3p miRNA MIMAT0017194 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID02470259 mmu-miR-6929-5p miRNA MIMAT0027758 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID02735835 mmu-miR-3078-3p miRNA MIMAT0014865 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID02809041 mmu-miR-7669-3p miRNA MIMAT0029845 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID02939711 mmu-miR-133b-3p miRNA MIMAT0000769 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID02992802 mmu-miR-93-5p miRNA MIMAT0000540 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID03061964 mmu-miR-3104-5p miRNA MIMAT0014939 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID03233163 mmu-miR-7239-3p miRNA MIMAT0028447 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID03321060 mmu-miR-7006-5p miRNA MIMAT0027916 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID03584119 mmu-miR-6976-3p miRNA MIMAT0027855 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID03759650 mmu-miR-877-5p miRNA MIMAT0004861 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID03822617 mmu-miR-378a-3p miRNA MIMAT0003151 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID03843894 mmu-miR-1954 miRNA MIMAT0009425 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID03860464 mmu-miR-6904-5p miRNA MIMAT0027708 Sorbs3 mRNA 20410 Prediction 0.1828 Sorbs3 RAID03895976 mmu-miR-9-5p miRNA MIMAT0000142 Sorbs3 mRNA 20410 Prediction 0.2202 Sorbs3 RAID04064550 mmu-miR-5110 miRNA MIMAT0020618 Sorbs3 mRNA 20410 Prediction 0.1828