Sharpin
DNA & RNA Element - miRTarBase
Target Gene (Entrez ID)miRTarBase IDmiRNASpecies (miRNA)Target GeneSpecies (Target Gene)ExperimentsSupport TypeReferences (PMID)
MIRT012999mmu-miR-297a-5pMus musculusSharpin106025Mus musculusSequencingFunctional MTI (Weak)19536157
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0000375mmu-miR-297a106025SharpinuguacgUGUACGUG-UGUAUGUa ||| | :| ||||||| uaaacaACAGGGGCUACAUACAa217108130[mm9:15:76177498-76177520:-]0.51881517-13.31-0.6548
MIMAT0004759mmu-miR-466a-5p106025SharpinauaCAUGUACAUGUGUGUGUAu ||| || || | |||||| cuaGUA-AU-UAAAGACACAUa220132151[mm9:15:76177477-76177496:-]0.51881276-10.78-0.1322
MIMAT0003166mmu-miR-546106025SharpincugaggcaCGGUGGUa ||||||| ------aaGCCACCAa29110[mm9:15:76177691-76177700:-]0.56151407-12.80-0.7192
MIMAT0003895mmu-miR-764-3p106025SharpinugucaacggUGAUACC-GGAGGa | ||||| ||||| guuacagagAAUAUGGCCCUCCu2141335[mm9:15:76177593-76177615:-]0.53821210-20.96-0.2203
MIMAT0003457mmu-miR-680106025SharpinggggguaCAGUCGUCUACGGg | ||| ||||||| uguugggGACAG-AGAUGCCa21584103[mm9:15:76177525-76177544:-]0.51881487-16.77-0.2325
MIMAT0003479mmu-miR-669c106025SharpinugUGU-GUAGGUGUGUGUU-GAUa ||| : |:|||:|||| ||| caACAGGGGCUACAUACAAGCUAg221112135[mm9:15:76177493-76177516:-]0.51881270-18.21-1.0992
MIMAT0003480mmu-miR-297b-5p106025SharpinuguacaaGUACGUG-UGUAUGUa || | :| ||||||| uaaacaaCAGGGGCUACAUACAa216108130[mm9:15:76177498-76177520:-]0.51881467-12.17-0.6622
MIMAT0003488mmu-miR-698106025SharpinucccUUCCUUUG-CUCUUAc |||| || |||||| accaAAGGUUACAGAGAAUa216625[mm9:15:76177603-76177615,76177689-76177695:-]0.54981236-13.50-0.2566
MIMAT0004865mmu-miR-297c106025SharpinuguacaUGUACGUG-UGUAUGUa ||| | :| ||||||| uaaacaACAGGGGCUACAUACAa217108130[mm9:15:76177498-76177520:-]0.51881517-13.31-0.6548
MIMAT0004875mmu-miR-466b-5p106025SharpinguaCAUGUACAUGUGUGUGUAg ||| || || | |||||| cuaGUA-AU-UAAAGACACAUa220132151[mm9:15:76177477-76177496:-]0.51881276-9.76-0.1322
MIMAT0004877mmu-miR-466c-5p106025SharpinauaCAUGUACGUGUGUGUGUAg ||| || :| | |||||| cuaGUA-AU-UAAAGACACAUa220132151[mm9:15:76177477-76177496:-]0.51881236-10.86-0.1322
MIMAT0004879mmu-miR-466e-5p106025SharpinauaCAUGUACAUGUGUGUGUAg ||| || || | |||||| cuaGUA-AU-UAAAGACACAUa220132151[mm9:15:76177477-76177496:-]0.51881276-9.76-0.1322
MIMAT0005837mmu-miR-1187106025SharpinaauguguguaugugugUGUGUAu |||||| aagcuaguaauuaaagACACAUa28129151[mm9:15:76177477-76177499:-]0.51881206-8.47-0.1309
MIMAT0005859mmu-miR-1198106025SharpinggUUCGGUC---GGUCCUUGUGUAu ||||:|| ::| :|||||| acAAGCUAGUAAUUAAAGACACAUa221127151[mm9:15:76177477-76177501:-]0.51881396-21.70-0.1348
MIMAT0007880mmu-miR-1901106025SharpinccugggggcccucAUGCUCGcc ||||||| aauuaaagacacaUACGAGCca310137158[mm9:15:76177470-76177491:-]0.51881250-11.93-0.2429
MIMAT0013803mmu-miR-2861106025SharpinggCGGGCGG-CG--GUCCGGGg |||| || |: ||||||| ugGCCCUCCUGUCACAGGCCCa2182647[mm9:15:76177581-76177602:-]0.53821517-29.34-0.8064
MIMAT0000142mmu-miR-9106025SharpinaguaugucgaucuauUGGUUUCu ||||||| ----------aagccACCAAAGg29113[mm9:15:76177615-76177615,76177689-76177700:-]0.54981407-10.74-0.5254
MIMAT0000153mmu-miR-141106025SharpingguagaaaugguCUGUCACAAu | ||||||| ggggacagagauGCCAGUGUUa21188109[mm9:15:76177519-76177540:-]0.51881427-14.27-0.5506
MIMAT0000159mmu-miR-149106025SharpincccUCACUUCUGUG---CCUCGGUcu | | ||||||| |||||| guaAUUAAAGACACAUACGAGCCA--321135158[mm9:15:76177470-76177493:-]0.51881390-17.27-0.1189
MIMAT0000159mmu-miR-149106025SharpincccucACUUCUGUGCCU-CGGUCu ||::|||| || ||||| cuuguUGGGGACAGAGAUGCCAGu21982105[mm9:15:76177523-76177546:-]0.51881300-21.43-0.4183
MIMAT0000519mmu-miR-200a106025SharpinuguagcaaugguCUGUCACAAu | ||||||| ggggacagagauGCCAGUGUUa21188109[mm9:15:76177519-76177540:-]0.51881427-14.32-0.5470
MIMAT0003172mmu-miR-542-3p106025SharpinaaagucaauaguuaGACAGUGu ||||||| agaauauggcccucCUGUCACa292041[mm9:15:76177587-76177608:-]0.53821407-12.88-0.3074
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G069512SharpinMus musculus106025
DNA & RNA Element - RepTar
Gene NamemiRNABeginEndProfile
Sharpinmmu-miR-297cbeg:111end:130pic:3' TGTACATGTA--CGTGTGTATGTA 5'& ||| || .||||||| &5' ------ACAGGGGC-TACATACA- 3'
Sharpinmmu-miR-680beg:90end:103pic:3' GGGGGTACAGTCGTCTACGGG 5'& ||| ||||||| &5' ---------CAG-AGATGCC- 3'
Sharpinmmu-miR-2861beg:28end:47pic:3' GGCGGGCGGCGGTCCGGGG 5'& || ||.|.| ||||||| &5' CCTCCTGTCA-CAGGCCC- 3'
Sharpinmmu-miR-141beg:90end:110pic:3' GGTAGAAATGGTCT-----GTCACAAT 5'& |||| |||||||| &5' ----------CAGAGATGCCAGTGTTA 3'
Sharpinmmu-miR-200abeg:90end:110pic:3' TGTAGCAATGGTCT-----GTCACAAT 5'& |||| |||||||| &5' ----------CAGAGATGCCAGTGTTA 3'
Sharpinmmu-miR-542-3pbeg:31end:42pic:3' AAAGTCAATAGTTAGACAGTGT 5'& |||||||| &5' --------------CTGTCACA 3'
Sharpinmmu-miR-546beg:0end:10pic:3' CTGAGGCACGGTGGTA 5'& ||||||| &5' --------GCCACCA- 3'
Sharpinmmu-let-7ibeg:120end:142pic:3' TTGTCGTGTTTGATGATGGAGT 5'& ||| .||||.||| || |.| &5' -ACA-TACAAGCTAGTAA-TTA 3'
Sharpinmmu-miR-1198beg:129end:152pic:3' GGTTCGGTCGGTCC---TTGTGTAT 5'& |||.||. .||||||| &5' ---AGCTAGTAATTAAAGACACATA 3'
Sharpinmmu-miR-1896beg:1end:23pic:3' GAGGAGTGGGTGGTA------GTCTCTC 5'& |||||| |||||| &5' --------CCACCAAAGGTTACAGAGA- 3'
Sharpinmmu-miR-1954beg:55end:72pic:3' TTGTCCCAGAG--TGAGACGTCA 5'& ||. |||.||||| &5' --------CTTGAACTTTGCAG- 3'
Sharpinmmu-miR-26abeg:42end:64pic:3' TCGGATAGGACCTAATGAACTT 5'& ||| || ||||||| &5' -GCCCAACCACCACCACTTGAA 3'
Sharpinmmu-miR-546beg:39end:55pic:3' CTGAGGCACGGTGGTA 5'& |.| || |||||| &5' GGC-CCAA-CCACCA- 3'
Sharpinmmu-miR-669dbeg:111end:132pic:3' TGTATATGTA--CG-TGTGTGTTCA 5'& ||| || |||.||||| &5' ------ACAGGGGCTACATACAAG- 3'
Sharpinmmu-miR-758beg:3end:21pic:3' ATCACCTGG--TCCAGTGTTT 5'& ||| ||||.|||.| &5' ------ACCAAAGGTTACAGA 3'
Sharpinmmu-miR-758beg:23end:42pic:3' ATCACCTGGTC--CAGTGTTT 5'& ||| || ||||||. &5' ---TGGCCCTCCTGTCACAG- 3'
Sharpinmmu-miR-760beg:29end:51pic:3' AGGG--GTGTCTGGGTCTCGGC 5'& |||. |||||.|||| || &5' TCCTGTCACAGGCCCAA--CC- 3'
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
SharpinRAID00073734mmu-miR-141-3pmiRNAMIMAT0000153SharpinmRNA106025Prediction0.1828
SharpinRAID00700968mmu-miR-3091-3pmiRNAMIMAT0014904SharpinmRNA106025Prediction0.1828
SharpinRAID00734869mmu-miR-9-5pmiRNAMIMAT0000142SharpinmRNA106025Prediction0.1828
SharpinRAID01201668mmu-miR-297a-5pmiRNAMIMAT0000375SharpinmRNA106025NGS (Next Generation Sequencing)0.5483
SharpinRAID01832275mmu-miR-2861miRNAMIMAT0013803SharpinmRNA106025Prediction0.1828
SharpinRAID02392467mmu-miR-200a-3pmiRNAMIMAT0000519SharpinmRNA106025Prediction0.1828
SharpinRAID03081920mmu-miR-149-5pmiRNAMIMAT0000159SharpinmRNA106025Prediction0.1828
SharpinRAID03817400mmu-miR-542-3pmiRNAMIMAT0003172SharpinmRNA106025Prediction0.1828