DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Hira; Tuple1 ATTTA 734-3781 4343-4347 Hira; Tuple1 WWATTTAWW 734-3781 4341-4349

DNA & RNA Element - circBase circRNA ID Chrom Start End Strand mmu_circ_0000673 chr16 18894866 18899550 +

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT015881 mmu-miR-124-3p Mus musculus Hira 15260 Mus musculus Microarray Functional MTI (Weak) 18619591

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000129 mmu-miR-30a* 15260 Hira cgacgUUUGUAGGC-UGACUUUc |||:| ::| ||||||| aaaaaAAAUAAUUGUACUGAAAu 2 18 593 615 [mm9:16:18970242-18970264:+] 0.7615 156 7 -11.30 -1.3034 MIMAT0000129 mmu-miR-30a* 15260 Hira cgacguUUGUAGG-CUGACUUUc :||| |: ||||||| aauuauGACAGCUACACUGAAAa 2 17 573 595 [mm9:16:18970222-18970244:+] 0.7615 147 7 -8.98 -1.3055 MIMAT0004527 mmu-miR-124* 15260 Hira uaguuccaggcgacACUUGUGc ||||||: aaguguaaaauaaaUGAACAUg 2 9 718 739 [mm9:16:18970367-18970388:+] 0.7834 124 0 -11.86 -0.1752 MIMAT0004529 mmu-miR-125b* 15260 Hira uccaggguuCUUGGACUGAACa ||| :| ||||| aauuguacuGAAAUUAACUUGu 2 14 602 623 [mm9:16:18970251-18970272:+] 0.7710 121 0 -11.41 -0.1046 MIMAT0000137 mmu-miR-126-5p 15260 Hira gcgcauggUUUUCAUUAUUAc |||| |||||| uacacugaAAAAAAAAUAAUu 2 14 585 605 [mm9:16:18970234-18970254:+] 0.7615 125 6 -3.15 -0.3236 MIMAT0004531 mmu-miR-135a* 15260 Hira gcggugccgagguUAGGGAUAu |||||||| gguugaucaggauAUCCCUAUa 2 10 510 531 [mm9:16:18970159-18970180:+] 0.7520 145 7 -18.00 -1.2483 MIMAT0004532 mmu-miR-136* 15260 Hira uuCUGAGUAAACUCUGC-UACUa | :||| || ||| |||| cuGCUUCAGCUGUAACGAAUGAg 2 21 343 365 [mm9:16:18969992-18970014:+] 0.6148 120 0 -11.94 -0.6534 MIMAT0000218 mmu-miR-24-1* 15260 Hira ugaCUAUAGUCGAGU---CAUCCGUg || ||::| ||| ||||| | uugGACAUUGG-UCACUUGUAGGAAa 2 21 538 562 [mm9:16:18970187-18970211:+] 0.7520 121 0 -14.64 -0.1705 MIMAT0000234 mmu-miR-201 15260 Hira uucuuguuacggaaUGACUCAu ||||||| guggaaggguagaaACUGAGUg 2 9 81 102 [mm9:16:18927776-18927797:+] 0.5030 140 7 -16.08 -0.2384 MIMAT0000249 mmu-miR-30e* 15260 Hira cgacaUUUGUAGGC-UGACUUUc |||:| ::| ||||||| aaaaaAAAUAAUUGUACUGAAAu 2 18 593 615 [mm9:16:18970242-18970264:+] 0.7615 156 7 -11.40 -1.3034 MIMAT0000249 mmu-miR-30e* 15260 Hira cgacAU-UUGUAGG-CUGACUUUc || :||| |: ||||||| uaauUAUGACAGCUACACUGAAAa 2 19 572 595 [mm9:16:18970221-18970244:+] 0.7615 148 7 -8.98 -1.3055 MIMAT0004572 mmu-miR-290-3p 15260 Hira cccGAAUUUUGAUCCGCCGU-GAAa || ||| ||| |||| ||| ugaCUCCAAA--AGGGGGCAGCUUg 2 22 186 208 [mm9:16:18969835-18969857:+] 0.5841 122 0 -13.72 -0.1555 MIMAT0000370 mmu-miR-292-3p 15260 Hira ugUGAGUUUUGGACCGCCGU-GAAa |||| ||| || |||| ||| ugACUCCAAA--AGGGGGCAGCUUg 2 23 186 208 [mm9:16:18969835-18969857:+] 0.5841 127 0 -16.80 -0.1555 MIMAT0004578 mmu-miR-300* 15260 Hira ugUUUCCU--AUUGGAGAGAAGUu ||| | | ::|| |||||| ugAAAUUAACUUGUCUAUCUUCAu 2 21 610 633 [mm9:16:18970259-18970282:+] 0.7710 123 6 -8.94 -0.3584 MIMAT0004579 mmu-miR-302a* 15260 Hira cguucAUGUUGGUGCAAAUUca | || ::: |||||| cuaucUUCAUUUG-GUUUAAuu 3 18 624 644 [mm9:16:18970273-18970293:+] 0.7710 123 0 -3.33 -0.3148 MIMAT0004583 mmu-miR-130b* 15260 Hira ucaucacguugucccUUUCUCa |||||| uuuaaauguuuguaaAAAGAGa 2 8 645 666 [mm9:16:18970294-18970315:+] 0.6479 120 6 -6.64 -0.1437 MIMAT0004583 mmu-miR-130b* 15260 Hira ucAUCACGUUGU--CCCUUUCUca |||| || | |||||| uaUAGUUGAAAAUUUAGAAAGAua 3 21 249 272 [mm9:16:18927944-18927967:+] 0.5155 127 0 -7.01 -0.1310 MIMAT0004583 mmu-miR-130b* 15260 Hira ucaUCACGUUGUCCCUUUCUca | | | |: |||||| cccACUCCCAUUAUGAAAGAca 3 20 227 248 [mm9:16:18927922-18927943:+] 0.5155 123 0 -3.87 -0.1563 MIMAT0004622 mmu-let-7c-1* 15260 Hira ccUUUCGAUCUUCCAACAUGuc ||| | || |||||| aaAAAAAAAUAA--UUGUACug 3 21 592 611 [mm9:16:18970241-18970260:+] 0.7615 125 0 -6.51 -0.5974 MIMAT0004622 mmu-let-7c-1* 15260 Hira ccuuucgaucuuccAACAUGuc |||||| cacauggacuauuuUUGUACua 3 9 455 476 [mm9:16:18970104-18970125:+] 0.6797 120 0 -6.66 -0.2070 MIMAT0004622 mmu-let-7c-1* 15260 Hira ccuuucGAUCUUCCAACAUGUc :|| | | ||||| | uaauuuUUAAAUGUUUGUAAAa 2 17 640 661 [mm9:16:18970289-18970310:+] 0.7710 120 0 -1.80 -0.1013 MIMAT0004626 mmu-miR-18a* 15260 Hira gucuUCCUCGUGAAUCCCGUCa || || ||||||| ccucAGCUGCUGCAAGGGCAGg 2 19 15 36 [mm9:16:18969664-18969685:+] 0.5958 142 7 -20.06 -0.3106 MIMAT0000558 mmu-miR-325* 15260 Hira ugugaaugacucguggAUGAUCc |||||| acauggacuauuuuugUACUAGa 2 8 456 478 [mm9:16:18970105-18970127:+] 0.6797 120 6 -12.54 -0.3427 MIMAT0004647 mmu-miR-338-5p 15260 Hira gugAGUCGUGGUCCUAUA-ACAa |:| ||:: ||||| ||| cugUUAUCAUUUUGAUAUCUGUa 2 20 318 340 [mm9:16:18928013-18928035:+] 0.5155 123 0 -9.10 -1.1145 MIMAT0000605 mmu-miR-350 15260 Hira cuuucaCAUACCCG--AAACACUu | ||| || ||||||| uguaacGAAUGAGCCAUUUGUGAg 2 17 353 376 [mm9:16:18970002-18970025:+] 0.6148 151 7 -11.30 -0.2294 MIMAT0004659 mmu-miR-10a* 15260 Hira auaaggggaucuaugCUUAAAc |||||| acuauuuuuguacuaGAAUUUg 2 8 462 483 [mm9:16:18970111-18970132:+] 0.7520 120 6 -9.92 -0.1610 MIMAT0000672 mmu-miR-199b* 15260 Hira cuuguccaucagAUUUGUGACCc ||:||||||| uugaccccaaggUAGACACUGGc 2 12 298 320 [mm9:16:18969947-18969969:+] 0.6410 151 7 -18.74 -0.1548 MIMAT0000672 mmu-miR-199b* 15260 Hira cuugUCCAUCAGAUUUGUG-ACCc || |: ||| :|||| ||| gcuaAGCUGUUCU-GACACAUGGa 2 20 440 462 [mm9:16:18970089-18970111:+] 0.6797 121 0 -12.26 -1.1645 MIMAT0000672 mmu-miR-199b* 15260 Hira cuuguccaucagauuUGUGACcc |||||| cuaauuaugacagcuACACUGaa 3 9 571 593 [mm9:16:18970220-18970242:+] 0.7520 120 0 -9.69 -0.6090 MIMAT0004691 mmu-miR-382* 15260 Hira uuuuucacaacAGGCACUUACu | :||||||| gacccgaagccUGUGUGAAUGc 2 12 420 441 [mm9:16:18970069-18970090:+] 0.6139 143 7 -10.87 -0.6206 MIMAT0004704 mmu-miR-335-3p 15260 Hira ccaguccUCGUUAUUACUUUUu ||| | | |||||| uuaugacAGCUACACUGAAAAa 2 16 575 596 [mm9:16:18970224-18970245:+] 0.7615 127 6 -7.31 -0.5089 MIMAT0001422 mmu-miR-434-3p 15260 Hira uccucagcucacuACCAAGUUu |||||:|| gucuaucuucauuUGGUUUAAu 2 10 622 643 [mm9:16:18970271-18970292:+] 0.7710 129 0 -7.34 -0.1100 MIMAT0004758 mmu-miR-463 15260 Hira gauggaauAUACCACAGAUAGu || |||||||| acugaaauUAACUUGUCUAUCu 2 15 608 629 [mm9:16:18970257-18970278:+] 0.7710 146 7 -12.72 -1.3254 MIMAT0002105 mmu-miR-464 15260 Hira auAGAGUG-UCUUA----UUUGAACCau |: :|| ||||| ||||||| uuUUGUACUAGAAUUUGCUAACUUGGaa 3 22 467 494 [mm9:16:18970116-18970143:+] 0.7520 131 0 -14.88 -0.3038 MIMAT0002105 mmu-miR-464 15260 Hira auAGAGUG-UCUUAUUUGAACCau | || | | || |||||| gaUAUCCCUAUAAGUUACUUGGac 3 22 520 543 [mm9:16:18970169-18970192:+] 0.7520 128 0 -12.03 -0.1306 MIMAT0004759 mmu-miR-466a-5p 15260 Hira auACAUGUACAUG---UGUGUGUAu | | ||| ||| ||||||| gcUCUCCAUAUACUCUCCACACAUg 2 21 57 81 [mm9:16:18927752-18927776:+] 0.4904 151 7 -13.88 -0.1930 MIMAT0002111 mmu-miR-470 15260 Hira ugagugGUCACGGUCA-GGUUCUu :|||| ||| |||||| gaaagaUAGUGAAAGUCCCAAGAa 2 18 265 288 [mm9:16:18927960-18927983:+] 0.5155 129 6 -21.59 -1.0261 MIMAT0003127 mmu-miR-484 15260 Hira uaGCCCUCCCCUG---ACUCGGACu | | |||| | |||||||| gcCAGCAGGGAUCUCUUGAGCCUGu 2 21 266 290 [mm9:16:18969915-18969939:+] 0.6410 151 7 -23.17 -0.3643 MIMAT0003129 mmu-miR-485* 15260 Hira cucuccucucggcacAUACUGa |||||| aauuuaaacucuaauUAUGACa 2 8 561 582 [mm9:16:18970210-18970231:+] 0.7520 120 6 -4.66 -0.3029 MIMAT0003170 mmu-miR-541 15260 Hira ucAC-ACUGGUUGUAGUC--UUAGGGAa || ||:::: ||||| |||||| ucUGUUGGUUG--AUCAGGAUAUCCCUa 2 24 504 529 [mm9:16:18970153-18970178:+] 0.7520 122 6 -18.30 -0.1601 MIMAT0003173 mmu-miR-547 15260 Hira gagugaguuucuacAUGGUUc |||||| gaacaugcauuggaUACCAA- 2 8 733 752 [mm9:16:18970382-18970401:+] 0.7834 120 6 -10.10 -0.1950 MIMAT0003185 mmu-miR-369-5p 15260 Hira cgCUUAUAUUGUGCCAGCUAGa ||| |||| : ||| ||| cuGAAAUUAAC-UUGUCUAUCu 2 21 609 629 [mm9:16:18970258-18970278:+] 0.7710 126 0 -10.91 -0.1391 MIMAT0005460 mmu-miR-1224 15260 Hira gaGGUGGAGGGGUCAGGAGug |:| | :||||||| caCUAAAUAAAUAGUCCUCug 3 20 384 404 [mm9:16:18928079-18928099:+] 0.5741 127 0 -16.32 -0.1217 MIMAT0003731 mmu-miR-671-5p 15260 Hira gagGUCGGGGAGGUCCCGA-AGGa ::|:||| :|||||| ||| uuaUGGUCCCCAUAGGGCUCUCCa 2 21 41 64 [mm9:16:18927736-18927759:+] 0.4904 132 0 -26.95 -0.6309 MIMAT0003732 mmu-miR-668 15260 Hira ccaucaCCCGGC-UCGGCUCACUGu |||: | | |:||||||| guggaaGGGUAGAAACUGAGUGACc 2 19 81 105 [mm9:16:18927776-18927800:+] 0.5030 157 7 -24.19 -0.4013 MIMAT0004188 mmu-miR-802 15260 Hira uuCCUACUUAGAAA--CAAUGAcu |||| || | |||||| caGGAUAUCCCUAUAAGUUACUug 3 21 517 540 [mm9:16:18970166-18970189:+] 0.7520 127 0 -11.20 -0.1050 MIMAT0003735 mmu-miR-672 15260 Hira agUGUGUGUCAUGU--GGUU-GGAGu |||:: | ||:| |||| |||| ggACAUGGACUAUAUCCCAAGCCUCc 2 22 159 184 [mm9:16:18969808-18969833:+] 0.5841 128 0 -16.77 -0.2529 MIMAT0003895 mmu-miR-764-3p 15260 Hira ugUCAACGGUGAUACCG-GAGGa :|| ||| || ||| |||| auGGUCCCCA-UAGGGCUCUCCa 2 21 43 64 [mm9:16:18927738-18927759:+] 0.4904 122 0 -17.18 -0.6346 MIMAT0003896 mmu-miR-763 15260 Hira cggugaccaagaaGGGUCGACc |||||||| cccuccauguaggCCCAGCUGu 2 10 210 231 [mm9:16:18969859-18969880:+] 0.6126 145 7 -20.65 -0.1749 MIMAT0003449 mmu-miR-488* 15260 Hira aacucucACGAUAAUAGACcc | :|: |||||| guuaucaUUUUGAUAUCUGua 3 15 320 340 [mm9:16:18928015-18928035:+] 0.5155 126 0 -5.89 -0.1062 MIMAT0003451 mmu-miR-677 15260 Hira agucuucgauuaguaGUGACUu |||||| uaauuaugacagcuaCACUGAa 2 8 572 593 [mm9:16:18970221-18970242:+] 0.7520 120 6 -13.86 -0.6412 MIMAT0003466 mmu-miR-687 15260 Hira aguaACGACGUAA--GGUCCUAUc ||:|| :|| :||||||| uuucUGUUG-GUUGAUCAGGAUAu 2 19 502 524 [mm9:16:18970151-18970173:+] 0.7520 151 7 -14.61 -1.0713 MIMAT0003466 mmu-miR-687 15260 Hira aguaacgacguaaggUCCUAUc |||||| gaaagucccaagaagAGGAUAa 2 8 275 296 [mm9:16:18927970-18927991:+] 0.5155 120 6 -6.56 -0.1145 MIMAT0003470 mmu-miR-691 15260 Hira aaAAGACGG-AGAGAAGUCCUua |||||:: :| |||||| guUUCUGUUGGUUGAUCAGGAua 3 21 501 523 [mm9:16:18970150-18970172:+] 0.7520 135 0 -17.84 -0.1092 MIMAT0003471 mmu-miR-692 15260 Hira cucacuccGCGAGUUUCUCUa :|: ||||||| uaaauguuUGUAAAAAGAGAc 2 14 647 667 [mm9:16:18970296-18970316:+] 0.6479 141 7 -10.03 -1.0104 MIMAT0003474 mmu-miR-694 15260 Hira gaAGUCCGUUGUAAAAGUc |: ||: |||||:| caUUUGGUUUAAUUUUUAa 2 18 631 649 [mm9:16:18970280-18970298:+] 0.7710 129 0 -5.80 -0.2565 MIMAT0003742 mmu-miR-455 15260 Hira caCAUAUAC-GGGCACCUGAcg || | || | | |||||| cuGU-UCUGACACAUGGACUau 3 20 446 466 [mm9:16:18970095-18970115:+] 0.6797 128 0 -10.21 -0.1104 MIMAT0003493 mmu-miR-703 15260 Hira aaGAAAGGAAGACUUCCAAAa :|| :||:| || |||| ggUUUAAUUUUUAAAUGUUUg 2 20 636 656 [mm9:16:18970285-18970305:+] 0.7710 127 0 -3.42 -0.1635 MIMAT0003495 mmu-miR-705 15260 Hira acggguGGGGUGGAGGGUGg |||: |||||||| guuuuuCCCUCCCUCCCACu 2 15 213 232 [mm9:16:18927908-18927927:+] 0.5155 158 7 -26.89 -0.3618 MIMAT0003497 mmu-miR-707 15260 Hira gcauccGUUC-GCCGUACUGAc |||| | ||||||| auauccCAAGCCUCCAUGACUc 2 16 170 191 [mm9:16:18969819-18969840:+] 0.5841 150 7 -15.11 -0.1788 MIMAT0003512 mmu-miR-450b-3p 15260 Hira uacguacguuuuacaAGGGUUa |||||| gaaagauagugaaagUCCCAAg 2 8 265 286 [mm9:16:18927960-18927981:+] 0.5155 120 6 -10.77 -0.1088 MIMAT0004842 mmu-miR-879 15260 Hira ccGAAUCUCG-AUA---UUCGGAGa | |:|| : ||| ||||||| gaCAUGGACUAUAUCCCAAGCCUCc 2 20 160 184 [mm9:16:18969809-18969833:+] 0.5841 145 7 -15.87 -0.1421 MIMAT0004844 mmu-miR-880 15260 Hira agaUGAGUCUCUCCUACCUCAu |||::|| | ||||||| cuaACUUGGA-A-UAUGGAGUu 2 20 484 503 [mm9:16:18970133-18970152:+] 0.7520 151 7 -15.58 -1.2079 MIMAT0004875 mmu-miR-466b-5p 15260 Hira guACAUGUACAUG---UGUGUGUAg | | ||| ||| ||||||| gcUCUCCAUAUACUCUCCACACAUg 2 21 57 81 [mm9:16:18927752-18927776:+] 0.4904 151 7 -12.20 -0.1930 MIMAT0004877 mmu-miR-466c-5p 15260 Hira auacaUGUACGUG-UGUGUGUAg |:|| | | ||||||| ucuccAUAUACUCUCCACACAUg 2 18 59 81 [mm9:16:18927754-18927776:+] 0.4904 148 7 -12.09 -0.1912 MIMAT0004879 mmu-miR-466e-5p 15260 Hira auACAUGUACAUG---UGUGUGUAg | | ||| ||| ||||||| gcUCUCCAUAUACUCUCCACACAUg 2 21 57 81 [mm9:16:18927752-18927776:+] 0.4904 151 7 -11.68 -0.1930 MIMAT0004883 mmu-miR-466g 15260 Hira acacACACGUACACAGACAUa | | :| |||:|||| uuaaUUUUUAAAUGUUUGUAa 2 18 639 659 [mm9:16:18970288-18970308:+] 0.7710 133 0 -7.71 -0.1801 MIMAT0004890 mmu-miR-509-5p 15260 Hira uacuaacgguguaagACCUCAu |||||| ugcuaacuuggaauaUGGAGUu 2 8 482 503 [mm9:16:18970131-18970152:+] 0.7520 120 6 -11.72 -0.1229 MIMAT0004897 mmu-miR-654-5p 15260 Hira ugUGUACAAGACGUCGAA-UGGu :| || ||| |||||| ||| gaGCCUG-UCUCCAGCUUGACCc 2 21 283 304 [mm9:16:18969932-18969953:+] 0.6410 130 0 -15.69 -0.3567 MIMAT0004898 mmu-miR-654-3p 15260 Hira uuccacuaccagucgUCUGUAu |||||| cacucccauuaugaaAGACAUa 2 8 229 250 [mm9:16:18927924-18927945:+] 0.5155 120 6 -8.01 -0.1878 MIMAT0004932 mmu-miR-878-5p 15260 Hira acagaacUGUAGGU-UGAUCUau |: |::: |||||| auggacuAUUUUUGUACUAGAau 3 16 458 480 [mm9:16:18970107-18970129:+] 0.6797 122 0 -10.23 -0.1073 MIMAT0004935 mmu-miR-872* 15260 Hira uccuccgaugacGU-UAUCAAgu || |||||| cauuaugaaagaCAUAUAGUUga 3 11 235 257 [mm9:16:18927930-18927952:+] 0.5155 121 0 -6.01 -0.1510 MIMAT0004862 mmu-miR-877* 15260 Hira acCCUCC-UCCCUCUUCUC-CUGu || || || :|||||| ||| agGGCGGUAGUAGGAAGAGAGACc 2 21 85 108 [mm9:16:18969734-18969757:+] 0.5841 127 0 -23.65 -0.3573 MIMAT0005293 mmu-miR-467e 15260 Hira uguAUA-UGUACGAGUGUGAAUa ||| ||| ||| ||||| | aauUAUGACA-GCU-ACACUGAa 2 20 573 593 [mm9:16:18970222-18970242:+] 0.7520 126 0 -11.06 -0.2867 MIMAT0005836 mmu-miR-1186 15260 Hira guACGGAAAUUAAGGUCGUGAg ||:| | | |||||||| guUGUCCUGCA--CCAGCACUa 2 21 123 142 [mm9:16:18969772-18969791:+] 0.5841 149 7 -18.04 -0.1918 MIMAT0005837 mmu-miR-1187 15260 Hira aauguGUGUAUGUG-UGUGUGUAu ||:|||| | ||||||| cucucCAUAUACUCUCCACACAUg 2 19 58 81 [mm9:16:18927753-18927776:+] 0.4904 161 7 -20.14 -0.1876 MIMAT0005841 mmu-miR-669h-5p 15260 Hira cgugAGUUGAUAUGUGGGUACGUa | || || |:: |||||| agugUAAAAUAAAUGAACAUGCAu 2 21 719 742 [mm9:16:18970368-18970391:+] 0.7834 128 6 -9.86 -0.2823 MIMAT0005847 mmu-miR-1190 15260 Hira cugucuCCCCUUGGAGUCGACu || :||||||||| uguccuGGCUUGCCUCAGCUGc 2 17 3 24 [mm9:16:18969652-18969673:+] 0.7127 152 7 -20.33 -0.5420 MIMAT0005847 mmu-miR-1190 15260 Hira cugucuCCCCUUGGAGUCGACu | | :|:||||||| ggugcuGUGCUGCUUCAGCUGu 2 17 334 355 [mm9:16:18969983-18970004:+] 0.6410 148 7 -16.56 -0.5484 MIMAT0005855 mmu-miR-467h 15260 Hira uguAUA-UGUACGUGUGUGAAUa ||| ||| || :||||| | aauUAUGACA-GC-UACACUGAa 2 20 573 593 [mm9:16:18970222-18970242:+] 0.7520 122 0 -10.37 -0.3063 MIMAT0005858 mmu-miR-1197 15260 Hira ucuUCAUCUGGUAC-ACAGGAu || ||| ::|| |||||| ggcAGAAGA-UGUGUUGUCCUg 2 19 111 131 [mm9:16:18969760-18969780:+] 0.5841 124 6 -16.07 -0.1574 MIMAT0007872 mmu-miR-1906 15260 Hira ucgGGACGGAGUCCGACGACGu |:||||||| |||||||| uggCUUGCCUCA-GCUGCUGCa 2 20 8 28 [mm9:16:18969657-18969677:+] 0.7127 177 7 -35.35 -0.8650 MIMAT0007875 mmu-miR-1898 15260 Hira cuaGGGGACACUUGGAACUGGa ||: | | | ||||||| gagCCUGUCUCCAGCUUGACCc 2 20 283 304 [mm9:16:18969932-18969953:+] 0.6410 151 7 -19.11 -0.2294 MIMAT0009393 mmu-miR-1930 15260 Hira ugCGA-CGUCCAUGAUACCUCca ||| | | | ||||||| uuGCUAACUUGGAAUAUGGAGuu 3 21 481 503 [mm9:16:18970130-18970152:+] 0.7520 131 0 -14.86 -0.1016 MIMAT0009396 mmu-miR-1933-5p 15260 Hira uuUGAUUCUGGCUU--GUGGUACUGa |||| || || | ||||||| ggACUAUAUCCCAAGCCUCCAUGACu 2 23 165 190 [mm9:16:18969814-18969839:+] 0.5841 157 7 -20.62 -0.2333 MIMAT0009399 mmu-miR-1935 15260 Hira ucuCUAGGCGGUCGGAGACGGa |: || |:| ||||||| guuGGCCCUCUA--CUCUGCCu 2 20 128 147 [mm9:16:18927823-18927842:+] 0.5155 148 7 -19.96 -0.3286 MIMAT0009408 mmu-miR-1943 15260 Hira agguccacgggucuaGGAGGGAa ||||||| uuguaacaguuuuucCCUCCCUc 2 9 205 227 [mm9:16:18927900-18927922:+] 0.5155 140 7 -18.09 -0.5009 MIMAT0009416 mmu-miR-1949 15260 Hira uuGAUACGACUGUAGGACCAUAUc |||| :| ||| :|||| || guCUAUCUU--CAU-UUGGUUUAa 2 23 622 642 [mm9:16:18970271-18970291:+] 0.7710 125 0 -10.96 -0.2102 MIMAT0009417 mmu-miR-1950 15260 Hira acugguauaggaauCUACGUCu ||||||| ggaguguuagggauGAUGCAGu 2 9 389 410 [mm9:16:18970038-18970059:+] 0.6045 140 7 -13.24 -0.2161 MIMAT0009422 mmu-miR-1951 15260 Hira aucGGUGUGGUCAG-AGGUGAUg :| :: | || ||||||| guaUCUUGACUUUCAUCCACUAa 2 20 367 389 [mm9:16:18928062-18928084:+] 0.5704 142 7 -13.47 -1.2339 MIMAT0009424 mmu-miR-1953 15260 Hira gucuucggacucuuGAAAGGGu ||||||| ucuguauuuccaguCUUUCCCc 2 9 335 356 [mm9:16:18928030-18928051:+] 0.5411 140 7 -15.03 -0.8233 MIMAT0009435 mmu-miR-1962 15260 Hira uacacAGGGUCACGGUCGGAGa || :| | |||||||| aucauUCAUAAU-CCAGCCUCu 2 18 299 319 [mm9:16:18927994-18928014:+] 0.5155 151 7 -19.75 -0.7953 MIMAT0009441 mmu-miR-1968 15260 Hira ucAGGUGGUA-GGAAU--UGUCGACGu ||:::| | |||: ||||||| --UCUGUCCUGGCUUGCCUCAGCUGCu 2 23 1 25 [mm9:16:18969650-18969674:+] 0.7127 148 7 -21.76 -0.5380 MIMAT0009441 mmu-miR-1968 15260 Hira ucagGUGGUAGGAAUUGUCGACGu | |:| :: |:|||||| | uaaaCUCUAAUUAUGACAGCUACa 2 21 565 588 [mm9:16:18970214-18970237:+] 0.7520 128 0 -14.30 -0.2146 MIMAT0009444 mmu-miR-1970 15260 Hira guuUCGGAUAGGGGU--CA-CUGUGu |||:|: ||||| || ||||| uccAGCUUGACCCCAAGGUAGACACu 2 21 292 317 [mm9:16:18969941-18969966:+] 0.6410 135 0 -24.37 -0.1146 MIMAT0009459 mmu-miR-1982* 15260 Hira ggAGGGGUCCUGGGAGGGUu |:||| |||||||| uuUUCCC---UCCCUCCCAc 2 19 215 231 [mm9:16:18927910-18927926:+] 0.5155 146 7 -25.59 -0.4535 MIMAT0011210 mmu-miR-2134 15260 Hira cguggggcaaAGGGUUCUg |||||||| auagugaaagUCCCAAGAa 2 10 270 288 [mm9:16:18927965-18927983:+] 0.5155 145 7 -14.07 -1.1472 MIMAT0011214 mmu-miR-2138 15260 Hira uaaGGCG-GUUCGGG-CAAGGGAa | || | ||||| ||||||| cacCAGCACUAGCCCAGUUCCCUg 2 20 132 155 [mm9:16:18969781-18969804:+] 0.5841 161 7 -28.80 -0.1526 MIMAT0011216 mmu-miR-2140 15260 Hira uggugguucuaGACGUGGa ||||||| gauguguugucCUGCACCa 2 9 118 136 [mm9:16:18969767-18969785:+] 0.5841 140 7 -11.84 -0.3891 MIMAT0012772 mmu-miR-599 15260 Hira caaaCUAUUUGACUGUGUu | |: |||||||| cuaaGCUGUUCUGACACAu 2 16 441 459 [mm9:16:18970090-18970108:+] 0.6075 147 7 -13.48 -0.4076 MIMAT0012774 mmu-miR-664 15260 Hira auccgACCCCUCAUUUACUUau || | |||||||| cuaagUGUAAAAUAAAUGAAca 3 18 716 737 [mm9:16:18970365-18970386:+] 0.7834 133 0 -5.02 -0.3685 MIMAT0014853 mmu-miR-3072 15260 Hira ucuUCCGAAGGACCUCCCCCGu | | ||| ||||||| uccAUGACUCCAAAAGGGGGCa 2 20 182 203 [mm9:16:18969831-18969852:+] 0.5841 147 7 -21.26 -0.5028 MIMAT0015642 mmu-miR-3471 15260 Hira uuACGGAAUGUCAACCUAGAGu |||| :||| ||||||| gcUGCC-AGCAG--GGAUCUCu 2 21 263 281 [mm9:16:18969912-18969930:+] 0.6410 151 7 -18.86 -0.1693 MIMAT0000133 mmu-miR-101a 15260 Hira aagucaaUAGUGUCAUGACau || |: |||||| aaaaaaaAUAAUUGUACUGaa 3 15 593 613 [mm9:16:18970242-18970262:+] 0.7615 130 0 -7.31 -0.7889 MIMAT0000133 mmu-miR-101a 15260 Hira aagucaauaGUGUCAUGACAu || :||||||| cuggcaaggCAAGGUACUGUa 2 13 153 173 [mm9:16:18927848-18927868:+] 0.5155 148 7 -14.87 -0.4123 MIMAT0000141 mmu-miR-130a 15260 Hira uacgggaaaaUUG-UAACGUGAc ||: ||||:||| cugaaaaaaaAAUAAUUGUACUg 2 13 589 611 [mm9:16:18970238-18970260:+] 0.7615 131 0 -11.93 -0.2550 MIMAT0000148 mmu-miR-136 15260 Hira gguaguaguuuuguuUACCUCa |||||| uugcuaacuuggaauAUGGAGu 2 8 481 502 [mm9:16:18970130-18970151:+] 0.7520 120 6 -12.53 -0.1508 MIMAT0000150 mmu-miR-138 15260 Hira gccggACUAAGUGUUGUGGUCGa || | : | :||||||| agaugUGUUGUCCUGCACCAGCa 2 19 117 139 [mm9:16:18969766-18969788:+] 0.5841 150 7 -16.72 -0.5340 MIMAT0000156 mmu-miR-144 15260 Hira ucauGUAGUAGA--UAU-GACAu :|||||:| ||| |||| cuguUAUCAUUUUGAUAUCUGUa 2 17 318 340 [mm9:16:18928013-18928035:+] 0.5155 123 0 -12.58 -1.1122 MIMAT0000162 mmu-miR-152 15260 Hira gguucaagacaguACGUGACu ||:|||| aaaaaaaaauaauUGUACUGa 2 9 592 612 [mm9:16:18970241-18970261:+] 0.7615 124 0 -9.91 -0.4535 MIMAT0000162 mmu-miR-152 15260 Hira gguUCAAGACAGU--ACGUGACu | || || || | ||||| ucuAAUUAUGACAGCUACACUGa 2 19 570 592 [mm9:16:18970219-18970241:+] 0.7520 121 0 -11.62 -0.1299 MIMAT0000209 mmu-miR-129-5p 15260 Hira cguUCGGGUCUGGCGUUUUUc || |:| ||:| ||||| gacAG-CUACACUGAAAAAAa 2 19 579 598 [mm9:16:18970228-18970247:+] 0.7615 128 0 -9.69 -0.1806 MIMAT0000209 mmu-miR-129-5p 15260 Hira cgUUCG-GGUCUGGCGUUUUUc |:|: |:: | ||||||| caAGGUACUGUAGGGCAAAAAa 2 20 162 183 [mm9:16:18927857-18927878:+] 0.5155 146 7 -9.34 -0.5498 MIMAT0000229 mmu-miR-199a-5p 15260 Hira cuugUCCAUCAGACUUGUGACCc |||||| ||||||| cccaAGGUAG-----ACACUGGc 2 20 303 320 [mm9:16:18969952-18969969:+] 0.6410 145 7 -18.74 -0.1436 MIMAT0000229 mmu-miR-199a-5p 15260 Hira cuugUCCAUCAGACUUGUG-ACCc || |: |||| |||| ||| gcuaAGCUGUUCUG-ACACAUGGa 2 20 440 462 [mm9:16:18970089-18970111:+] 0.6797 125 0 -14.73 -1.1495 MIMAT0000229 mmu-miR-199a-5p 15260 Hira cuuguccaucagacuUGUGACcc |||||| cuaauuaugacagcuACACUGaa 3 9 571 593 [mm9:16:18970220-18970242:+] 0.7520 120 0 -9.69 -0.6090 MIMAT0004577 mmu-miR-299 15260 Hira uucgccAAAUGGCAGG-GUGUAu | |||: ||| ||||| ucuccaUAUACUCUCCACACAUg 2 17 59 81 [mm9:16:18927754-18927776:+] 0.4904 124 0 -15.31 -0.2484 MIMAT0000379 mmu-miR-301a 15260 Hira cgaaacUGUUAUGAUAACGUGAc | || |: ||||:||| cugaaaAAAAAAUAAUUGUACUg 2 18 589 611 [mm9:16:18970238-18970260:+] 0.7615 141 0 -12.41 -0.2439 MIMAT0000379 mmu-miR-301a 15260 Hira cgaaaCUGUUAUGAUAAC-GUGAc ||| | ||||||| |||| ggcagGACCACACUAUUGCCACUg 2 19 31 54 [mm9:16:18969680-18969703:+] 0.5958 138 0 -20.83 -0.1197 MIMAT0000387 mmu-miR-130b 15260 Hira uacgggaaagUAGUAACGUGAc || ||||:||| ugaaaaaaaaAUAAUUGUACUg 2 13 590 611 [mm9:16:18970239-18970260:+] 0.7615 136 0 -12.95 -0.2550 MIMAT0000387 mmu-miR-130b 15260 Hira uacgGGAAAGUAGU-AACG-UGAc :||||| || |||| ||| ccagUCUUUCCCCACUUGCUACUg 2 19 344 367 [mm9:16:18928039-18928062:+] 0.5667 125 0 -18.35 -1.0123 MIMAT0000516 mmu-miR-148a 15260 Hira uguuucaagacaUCACGUGACu | ||:|||| gaaaaaaaaauaAUUGUACUGa 2 11 591 612 [mm9:16:18970240-18970261:+] 0.7615 126 0 -11.63 -0.4535 MIMAT0000529 mmu-miR-20a 15260 Hira gaUGGACGUGAUAUUC-GUGAAAu :::||:| | :|| |||||| auGUUUGUAAAAAGAGACACUUUg 2 22 650 673 [mm9:16:18970299-18970322:+] 0.6479 125 6 -15.77 -0.4433 MIMAT0000531 mmu-miR-22 15260 Hira ugucaagaaguugaCCGUCGAa ||||||| ugacuccaaaagggGGCAGCUu 2 9 186 207 [mm9:16:18969835-18969856:+] 0.5841 140 7 -17.12 -0.1004 MIMAT0000540 mmu-miR-93 15260 Hira gaUGGACGUGCUUGUC-GUGAAAc :::||:| || || |||||| auGUUUGUAAAAAGAGACACUUUg 2 22 650 673 [mm9:16:18970299-18970322:+] 0.6479 129 6 -19.66 -0.4400 MIMAT0000580 mmu-miR-148b 15260 Hira uguuucaagacacuACGUGACu ||:|||| gaaaaaaaaauaauUGUACUGa 2 9 591 612 [mm9:16:18970240-18970261:+] 0.7615 124 0 -11.38 -0.4535 MIMAT0000616 mmu-miR-101b 15260 Hira aagucgaUAGUGUCAUGACau || |: |||||| aaaaaaaAUAAUUGUACUGaa 3 15 593 613 [mm9:16:18970242-18970262:+] 0.7615 130 0 -7.31 -0.7962 MIMAT0000616 mmu-miR-101b 15260 Hira aaGUCGAU-AGUGUCAUGACAu ::|| | || :||||||| gcUGGCAAGGCAAGGUACUGUa 2 20 152 173 [mm9:16:18927847-18927868:+] 0.5155 150 7 -16.30 -0.4060 MIMAT0000656 mmu-miR-139-5p 15260 Hira gaCCUCUGUGCACGUG-ACAUCu ||| |: || ||| ||||| uuGGACAUUGGU-CACUUGUAGg 2 21 538 559 [mm9:16:18970187-18970208:+] 0.7520 122 0 -17.41 -1.2635 MIMAT0000656 mmu-miR-139-5p 15260 Hira gaccUCUGUGCACGUGACAUCu ||:|| | |:||||||| ggcaAGGCAAG-GUACUGUAGg 2 19 155 175 [mm9:16:18927850-18927870:+] 0.5155 160 7 -22.72 -0.3507 MIMAT0000661 mmu-miR-214 15260 Hira ugacGGACA-GACACGGA-CGACa ||| | || ||||| |||| uggcCCUCUACUCUGCCUAGCUGc 2 19 130 153 [mm9:16:18927825-18927848:+] 0.5155 129 0 -19.07 -0.1906 MIMAT0000662 mmu-miR-216a 15260 Hira agUGUCAACGGUCGACUCUAAu |:| ||| :| |||| ||| aaAUAAUUG-UA-CUGAAAUUa 2 21 598 617 [mm9:16:18970247-18970266:+] 0.7710 124 0 -9.10 -0.1223 MIMAT0000741 mmu-miR-377 15260 Hira uguuuucaaCGGAAACACACUa ||| ||||||| ggacccgaaGCC--UGUGUGAa 2 14 419 438 [mm9:16:18970068-18970087:+] 0.6204 142 7 -13.23 -0.3009 MIMAT0000743 mmu-miR-379 15260 Hira ggaugcAAGGUAUCAGAUGGu || | |||||:| cugaaaUUAACUUGUCUAUCu 2 16 609 629 [mm9:16:18970258-18970278:+] 0.7710 127 0 -9.28 -0.1868 MIMAT0000746 mmu-miR-381 15260 Hira ugucUCUCGAAC--GGGAACAUau :|| ||| | |||||| acuuGGACAUUGGUCACUUGUAgg 3 19 536 559 [mm9:16:18970185-18970208:+] 0.7520 129 0 -13.03 -0.2525 MIMAT0001076 mmu-miR-384-3p 15260 Hira uaacACUUGUUAAAGAUCCUUa ||: | | || |||||| acauUGGUC-ACUUGUAGGAAa 2 19 542 562 [mm9:16:18970191-18970211:+] 0.7520 124 6 -9.22 -0.4180 MIMAT0003128 mmu-miR-485 15260 Hira cuUAAGUAGUGCCGGUCGGAGa |||||| |: |||||||| ucAUUCAUAAU--CCAGCCUCu 2 21 300 319 [mm9:16:18927995-18928014:+] 0.5155 165 7 -22.96 -0.7880 MIMAT0003168 mmu-miR-543 15260 Hira uucuucacguggcgcUUACAAa |||||| uugguuuaauuuuuaAAUGUUu 2 8 634 655 [mm9:16:18970283-18970304:+] 0.7710 120 6 -4.27 -0.2881 MIMAT0003182 mmu-miR-494 15260 Hira cuCCAAA--GGGCACAUACAAAgu ||||| ::: | |||||| uuGGUUUAAUUUUUAAAUGUUUgu 3 21 634 657 [mm9:16:18970283-18970306:+] 0.7710 131 0 -6.70 -0.3782 MIMAT0003183 mmu-miR-376c 15260 Hira ugcACUUUAA---AGGAGAUACAa ||||||| |: ||||| | uacUGAAAUUAACUUGUCUAUCUu 2 19 607 630 [mm9:16:18970256-18970279:+] 0.7710 129 0 -9.03 -0.1072 MIMAT0003187 mmu-miR-20b 15260 Hira gaUGGACGUGAUACUC-GUGAAAc :::||:| | ||| |||||| auGUUUGUAAAAAGAGACACUUUg 2 22 650 673 [mm9:16:18970299-18970322:+] 0.6479 129 6 -20.20 -0.4433 MIMAT0004186 mmu-miR-301b 15260 Hira cgaaacUGUUAUGGUAACGUGAc | || |: ||||:||| cugaaaAAAAAAUAAUUGUACUg 2 18 589 611 [mm9:16:18970238-18970260:+] 0.7615 141 0 -12.41 -0.2439 MIMAT0004186 mmu-miR-301b 15260 Hira cgaaaCUGUUAUGGUAAC-GUGAc ||| | ||:|||| |||| ggcagGACCACACUAUUGCCACUg 2 19 31 54 [mm9:16:18969680-18969703:+] 0.5958 134 0 -20.14 -0.1197 MIMAT0003456 mmu-miR-495 15260 Hira uucUUCACGUGGUACAAACAaa || | : |||||||| uuuAAUUUUUAAAUGUUUGUaa 3 20 638 659 [mm9:16:18970287-18970308:+] 0.7710 131 0 -7.39 -0.4526 MIMAT0003486 mmu-miR-491 15260 Hira ggaguaccuucccAAGGGGUGa |||||||| guauuuccagucuUUCCCCACu 2 10 338 359 [mm9:16:18928033-18928054:+] 0.5411 145 7 -17.95 -1.0403 MIMAT0003515 mmu-miR-721 15260 Hira aagggggaaaAUUAACGUGAc ||||||:||| gaaaaaaaaaUAAUUGUACUg 2 12 591 611 [mm9:16:18970240-18970260:+] 0.7615 139 0 -14.10 -0.2573 MIMAT0004869 mmu-miR-421 15260 Hira cgcggguuaaUUACAGACAACUa |:| |||||||: uggaauauggAGUUUCUGUUGGu 2 14 490 512 [mm9:16:18970139-18970161:+] 0.7520 137 0 -14.17 -0.1036 MIMAT0004896 mmu-miR-590-3p 15260 Hira ugaucgaAUAUGUAUUUUAau || :::|||||| ucuuuucUAAGUGUAAAAUaa 3 15 710 730 [mm9:16:18970359-18970379:+] 0.7834 130 0 -1.86 -0.1327 MIMAT0004896 mmu-miR-590-3p 15260 Hira ugaUC-GAAUAUGUA-UUUUAAu || | |||| | |||||| gaaAGACAUAUAGUUGAAAAUUu 2 19 241 263 [mm9:16:18927936-18927958:+] 0.5155 121 6 -6.14 -0.9934 MIMAT0005850 mmu-miR-1192 15260 Hira uuAAACCAGACA--AACAAACAaa ||| |:| | ||||||| ggUUUAAUUUUUAAAUGUUUGUaa 3 21 636 659 [mm9:16:18970285-18970308:+] 0.7710 131 0 -6.98 -0.4526

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G006205 Hira Mus musculus 15260

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Hira mmu-miR-199a-5p beg:304 end:319 pic:3' CTTGTCCATCAGACTTGTGACCC 5'& |||||| ||||||| &5' ----AGGTAG-----ACACTGG- 3' Hira mmu-miR-199bstar beg:304 end:319 pic:3' CTTGTCCATCAGATTTGTGACCC 5'& |||||| ||||||| &5' ----AGGTAG-----ACACTGG- 3' Hira mmu-miR-30astar beg:586 end:615 pic:3' CGACG-----TTTGTAGGC-TGACTTTC 5'& ||| |||.| ..| ||||||| &5' -CTGAAAAAAAAATAATTGTACTGAAA- 3' Hira mmu-miR-3072 beg:187 end:204 pic:3' TCTTCCGAAGGACCTCCCCCGT 5'& ||| |||||||| &5' --------TCCAAAAGGGGGCA 3' Hira mmu-miR-138 beg:120 end:139 pic:3' GC-CGGACTAAGTGTTGTGGTCGA 5'& | |.. || | .||||||| &5' -GTGTTG---TC-CTGCACCAGC- 3' Hira mmu-miR-687 beg:508 end:524 pic:3' AGTAACGACGTAAGGTCCTATC 5'& |.|| .||||||| &5' -----GTTGA---TCAGGATA- 3' Hira mmu-miR-707 beg:173 end:191 pic:3' GCATCCGTTCGCC-GTACTGAC 5'& ||||| ||||||| &5' ------CAAGCCTCCATGACT- 3' Hira mmu-miR-1933-5p beg:172 end:191 pic:3' TTTGATTCTGGCTTGT-GGTACTGA 5'& || |.| |||||||| &5' ---------CCAAGCCTCCATGACT 3' Hira mmu-miR-92astar beg:66 end:82 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& .|.|. |||||||| &5' --------GCTAG-CCCCACCT 3' Hira mmu-miR-2140 beg:126 end:136 pic:3' TGGTGGTTCTAGACGTGGA 5'& ||||||| &5' -----------CTGCACC- 3' Hira mmu-miR-3471 beg:262 end:281 pic:3' TTACGGAATGTCAACCTAGAGT 5'& |||| .||| ||||||| &5' --TGCCA-GCAG--GGATCTC- 3' Hira mmu-miR-346 beg:403 end:419 pic:3' TCTCCGTCCGTGAGCCCGTCTGT 5'& ||| || ||||||| &5' --------GCAGTC-GGCAGAC- 3' Hira mmu-miR-2138 beg:137 end:155 pic:3' TAAGGCGGTTCGGG-CAAGGGAA 5'& | |. ||||| ||||||| &5' ----CACT-AGCCCAGTTCCCT- 3' Hira mcmv-miR-m01-1 beg:700 end:718 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& |.| ||||..||| &5' ------GGCAAT-TTCTTTTCT 3' Hira mcmv-miR-m01-3 beg:613 end:635 pic:3' AGCTCCGTTGT-CAGC--GAAGTGGC 5'& .||| ||| |||||.. &5' ------TAACTTGTCTATCTTCATT- 3' Hira mcmv-miR-M87-1 beg:334 end:356 pic:3' CGACGGCGACGGCTGCCGACGGA 5'& |||| .|||||. | ||||. &5' GCTG-TGCTGCTT-CAGCTGT-- 3' Hira mmu-let-7e beg:0 end:20 pic:3' TTGATATGTTGGA--GGATGGAGT 5'& ||.| ||| |.|.||||| &5' --CTGT----CCTGGCTTGCCTCA 3' Hira mmu-let-7g beg:0 end:20 pic:3' TTGACATGTTTGATGATGGAGT 5'& |||| | .|| |.||||| &5' --CTGTCCTGGCT--TGCCTCA 3' Hira mmu-miR-107 beg:328 end:348 pic:3' ACTATCGGGACATGTTACGACGA 5'& || ||.| .||||||| &5' -----GCAG-GTGCTGTGCTGCT 3' Hira mmu-miR-1186 beg:122 end:142 pic:3' GTAC-GGAAATTAAGGTCGTGAG 5'& || ||| |||||||| &5' --TGTCCTGCA---CCAGCACT- 3' Hira mmu-miR-1188 beg:283 end:307 pic:3' AGGACCG-GGTTGGAGTGTGGT 5'& |||| | |||.|.| || ||| &5' -CCTGTCTCCAGCTTGACCCCA 3' Hira mmu-miR-1190 beg:6 end:24 pic:3' CTGTCTCCCCTTGGAGTCGACT 5'& || .||||||||| &5' ------GGCTTGCCTCAGCTG- 3' Hira mmu-miR-1190 beg:230 end:256 pic:3' CTGT-CTCC--CCTTGGAGTCGACT 5'& ||| |.|| ||.||. .||| &5' GACTTGGGGCTGGGACTGGGGCT-- 3' Hira mmu-miR-1190 beg:331 end:355 pic:3' CTGTCT-CCCCT---TGGAGTCGACT 5'& |||. | | .|.||||||| &5' --CAGGTGCTGTGCTGCTTCAGCTG- 3' Hira mmu-miR-1196 beg:83 end:103 pic:3' TCCGTCTCCGTCCATCTAAA 5'& .|||.| |.||| ||| &5' GGGCGGTAGTAGGAAGA--- 3' Hira mmu-miR-139-3p beg:275 end:296 pic:3' GAGGTTGTCCCGGCGCAGAGGT 5'& |||. | ||| .||||||| &5' CTCTT---GAGCC-TGTCTCCA 3' Hira mmu-miR-141 beg:381 end:398 pic:3' GGTAGAAATGGTCTGTCACAAT 5'& .||.|. ||||||| &5' --------GCCGGGGAGTGTTA 3' Hira mmu-miR-149 beg:370 end:390 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& ||||. || ||||||.|. &5' ----GTGAGAGCA-GGAGCCGGG 3' Hira mmu-miR-151-5p beg:238 end:258 pic:3' TGA-TCTGACACTCGAGGAGCT 5'& .|| .||||| |.||||. &5' GCTGGGACTG-GGGCTCT---- 3' Hira mmu-miR-152 beg:733 end:746 pic:3' GGTTCAAGACAGTACGTGACT 5'& ||||||.||. &5' -----------CATGCATTGG 3' Hira mmu-miR-15a beg:328 end:348 pic:3' GTGTTTGGTAATACACGACGAT 5'& .|| . ||||||||| &5' -GCAGGTGC---TGTGCTGCT- 3' Hira mmu-miR-15b beg:328 end:348 pic:3' ACATTTGG-TACTACACGACGAT 5'& .| .|| ||||||||| &5' -----GCAGGTGCTGTGCTGCT- 3' Hira mmu-miR-16 beg:328 end:348 pic:3' GCGGTTATAAATGCACGACGAT 5'& || .|. .|||||||| &5' -GCAGGTGC---TGTGCTGCT- 3' Hira mmu-miR-17star beg:326 end:347 pic:3' GATGTTCACGGGAGTGACGTCA 5'& ||.||.||||. | .|||| &5' CTGCAGGTGCTGT-GCTGC--- 3' Hira mmu-miR-186star beg:232 end:243 pic:3' GGGTTTTTTAAGTGGAATCCCG 5'& |||.|||| &5' --------------CTTGGGGC 3' Hira mmu-miR-188-3p beg:661 end:682 pic:3' ACGTTTGGGACGTACACCCTC 5'& |.|| || ..||||||.| &5' ---AGACACTTTGTGTGGGGG 3' Hira mmu-miR-1894-5p beg:675 end:705 pic:3' TCTCCGTC-CACCA----TCCCCTCTC 5'& .|.|| | |||| |||||||.| &5' GGGGGTGGGGTGGGACAGAGGGGAGGG 3' Hira mmu-miR-18astar beg:15 end:36 pic:3' GTCTTCCTCGTGAATCCCGTCA 5'& ||| | ||| ||||||| &5' CAGCTGCTGCA---AGGGCAG- 3' Hira mmu-miR-18astar beg:189 end:205 pic:3' GTCTTCCTCGTGAA-TCCCGTCA 5'& || .|||||| &5' ---------CAAAAGGGGGCAG- 3' Hira mmu-miR-1906 beg:6 end:29 pic:3' TCGGGACGGAGTCCGACGACGT 5'& | |.||||||| ||||||||| &5' -GGCTTGCCTCA-GCTGCTGCA 3' Hira mmu-miR-1907 beg:326 end:349 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& || |||.| || |||||||. &5' --CTGCAGGTGCTGTGCTGCTT 3' Hira mmu-miR-1935 beg:241 end:261 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& |.|| |.| .| |||||||| &5' -GGGA-CTG--GGGCTCTGCCT 3' Hira mmu-miR-1950 beg:389 end:410 pic:3' ACTGGTATAGGAATCTACGTCT 5'& || ..| ||||||| &5' -GAGTGTTAGGGATGATGCAG- 3' Hira mmu-miR-195 beg:329 end:348 pic:3' CGGTTATAAAGACACGACGAT 5'& ||. |||||||||| &5' --CAGGTG--CTGTGCTGCT- 3' Hira mmu-miR-1952 beg:674 end:688 pic:3' GTCTTCCTCCCACCTCT 5'& ||.||||||.| &5' -----GGGGGGTGGGG- 3' Hira mmu-miR-1957 beg:43 end:55 pic:3' CAGTATACGAGATGGTGAC 5'& .|.|||||| &5' ----------TTGCCACTG 3' Hira mmu-miR-1957 beg:316 end:332 pic:3' CAGTATACG-AGATGGTGAC 5'& || |||.|||||| &5' -------GCATCTGCCACTG 3' Hira mmu-miR-1961 beg:4 end:20 pic:3' AAGATTGATGATGGAGT 5'& ||..|| |.||||| &5' --CTGGCT--TGCCTCA 3' Hira mmu-miR-1963 beg:194 end:213 pic:3' CTTCCGGAGTACTAGAGCAGGGT 5'& |..||| ||.||||| &5' GGGGGCAG------CTTGTCCC- 3' Hira mmu-miR-1967 beg:616 end:633 pic:3' CGTAGAAGAGGGGTCCTAGGAGT 5'& ||| ||. |||.||| &5' ----CTTGTCT-----ATCTTCA 3' Hira mmu-miR-1970 beg:437 end:459 pic:3' GTTTCGGATAGGGGTCACTGTGT 5'& ||. |. . ||||||| &5' ----GCTAAGCTGTTCTGACACA 3' Hira mmu-miR-1982.1 beg:671 end:693 pic:3' GACACCCTCTTGTATCCCACTCT 5'& ||||||.| .|.|||||.|| &5' -TGTGGGGG---GTGGGGTGGGA 3' Hira mmu-miR-1982.2 beg:671 end:691 pic:3' GACACCCTCTTGTATCCCACT 5'& ||||||.| .|.|||||. &5' -TGTGGGGG---GTGGGGTGG 3' Hira mmu-miR-199a-5p beg:529 end:549 pic:3' CTTGTCCATCAG---ACTTGTGACCC 5'& |||. ||.|||.||| &5' --------AGTTACTTGGACATTGG- 3' Hira mmu-miR-200a beg:378 end:398 pic:3' TGTAGCAATGGTCTGTCACAAT 5'& | .||.|. ||||||| &5' -----GGAGCCGGGGAGTGTTA 3' Hira mmu-miR-203star beg:27 end:42 pic:3' ACAACTTGACAGTTCTTGGTGA 5'& |..| ||.||||| &5' ----GGGC-----AGGACCAC- 3' Hira mmu-miR-207 beg:676 end:704 pic:3' CTCC-CTCCTCTC-GG-TCCTCTTCG 5'& |.|| |.|| |.| | |||.||.| &5' GGGGTGGGGTGGGACAGAGGGGAGG- 3' Hira mmu-miR-20astar beg:389 end:411 pic:3' GAAATTCACGAG--C-ATTACGTCA 5'& .||||.| | |.||||||| &5' ----GAGTGTTAGGGATGATGCAGT 3' Hira mmu-miR-2132 beg:74 end:85 pic:3' GTAGCGCAGTTGTGGGCGG 5'& ||||.|.| &5' -----------CACCTGTC 3' Hira mmu-miR-2135 beg:94 end:111 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& || .||||||. &5' -----GGAAGAGAGACCTT- 3' Hira mmu-miR-2146 beg:280 end:296 pic:3' GTGTACCTTGGGAAGAGGTG 5'& ||.||. |||||| &5' ------GAGCCTGTCTCCA- 3' Hira mmu-miR-217 beg:391 end:411 pic:3' AGGTCAGTCAAGGACTACGTCAT 5'& ||.|| ||||||||| &5' ----GTTAGGGA-TGATGCAGT- 3' Hira mmu-miR-221 beg:100 end:126 pic:3' CTTTGG-GTCGTCTGTTACATCGA 5'& ||.||| ..||||| .|||| |.| &5' GAGACCTTGGCAGAAGATGT-GTT 3' Hira mmu-miR-23b beg:419 end:438 pic:3' CCATTAGGGAC-CGT-TACACTA 5'& ||| || .||||| &5' ------CCCGAAGCCTGTGTGA- 3' Hira mmu-miR-24 beg:340 end:369 pic:3' GACAAGGACGAC-TTG---ACTCGGT 5'& ||| |.| |||| ||| ||||||| &5' CTGCTTCAGCTGTAACGAATGAGCCA 3' Hira mmu-miR-26a beg:523 end:541 pic:3' TCGGATAGGACCTAATGAACTT 5'& ||||| .|||||||.| &5' --CCTATAA---GTTACTTGGA 3' Hira mmu-miR-26b beg:523 end:541 pic:3' TGGATAGGACTTAATGAACTT 5'& ||||| |.|||||||.| &5' -CCTATA---AGTTACTTGGA 3' Hira mmu-miR-26bstar beg:360 end:383 pic:3' CTCGGTTCATTAC-CTCTTGTCC 5'& |||||| || ||||.|||| &5' GAGCCATT---TGTGAGAGCAGG 3' Hira mmu-miR-296-5p beg:235 end:258 pic:3' TGTCCTAACTCCC-CCCCGGGA 5'& .|| ||.| |||||.|| &5' --GGGGCTGGGACTGGGGCTCT 3' Hira mmu-miR-30bstar beg:156 end:178 pic:3' CTGCATTTGTA---GGTGTAGGGTC 5'& ||..|||| |.|.|||||| &5' ---GTGGACATGGACTATATCCCA- 3' Hira mmu-miR-30estar beg:595 end:615 pic:3' CGACATTTGTAGGC-TGACTTTC 5'& |||.| ..| ||||||| &5' -----AAATAATTGTACTGAAA- 3' Hira mmu-miR-322 beg:332 end:348 pic:3' AGGTTTTGTACTTAACGACGAC 5'& .|| ||||||| &5' --------GTGCTGTGCTGCT- 3' Hira mmu-miR-326 beg:49 end:70 pic:3' TGACC-TCCTTCCCGGGTCTCC 5'& ||||| ||| ||||||.| &5' ACTGGCAGGTT--GCCCAGGG- 3' Hira mmu-miR-328 beg:51 end:74 pic:3' TGCCTTCCCGTCTC-----TCCCGGTC 5'& |||||. |||||.|| &5' -------GGCAGGTTGCCCAGGGCTAG 3' Hira mmu-miR-330 beg:51 end:70 pic:3' CGGATTCTGTGTC-CGGGTCTCT 5'& |.|| . ||||||.| &5' ------GGCAGGTTGCCCAGGG- 3' Hira mmu-miR-343 beg:685 end:704 pic:3' AGACCCGTGTACTTCCCTCT 5'& |||| ||| ||.|||||. &5' --TGGG-ACA-GAGGGGAGG 3' Hira mmu-miR-3473 beg:237 end:261 pic:3' CCGACTC-GGTA--GAGA-GGT 5'& |||||.| |.. |||| || &5' GGCTGGGACTGGGGCTCTGCC- 3' Hira mmu-miR-3475 beg:278 end:297 pic:3' AAGTTTGGTACACGGAGGTCT 5'& | |.|| ||.|||||| &5' -TTGAGCC---TGTCTCCAG- 3' Hira mmu-miR-34a beg:250 end:270 pic:3' TGTTGGTCGATTCT--GTGACGGT 5'& .||| | ..|||||| &5' ------GGCTCTGCCTTGCTGCCA 3' Hira mmu-miR-370 beg:252 end:275 pic:3' TGGTCCAAGGTGG------GGTCGTCCG 5'& || || |||||||| &5' -------TCTGCCTTGCTGCCAGCAGG- 3' Hira mmu-miR-377 beg:425 end:438 pic:3' TGTTTTCAACGGAAACACACTA 5'& ||| ||||||| &5' ---------GCC--TGTGTGA- 3' Hira mmu-miR-377 beg:658 end:679 pic:3' TGTTTTCAACGGAAACACACTA 5'& ||.|| |||||||||. &5' --AAGAGACA-CTTTGTGTGG- 3' Hira mmu-miR-421 beg:489 end:513 pic:3' CGCGGGTTAATTACAGACAACTA 5'& | .| |.| |||||||.| &5' --GAATATGGAGTTTCTGTTGGT 3' Hira mmu-miR-431 beg:17 end:39 pic:3' ACGTACTGCCGGA--CGTTCTGT 5'& || || | || |||.||| &5' -GC-TG-CTGCAAGGGCAGGAC- 3' Hira mmu-miR-432 beg:701 end:721 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& || |.| ||| .||.||| &5' --GCA-ATT--TCTTTTCTAAG- 3' Hira mmu-miR-450a-3p beg:292 end:308 pic:3' TACTTACGTTTCGTA--GGGGTTA 5'& ||| |||||| &5' ----------AGCTTGACCCCAA- 3' Hira mmu-miR-450b-3p beg:159 end:179 pic:3' TAC-GTACGTTTTACAAGGGTTA 5'& | |||| | || |||||| &5' --GACATGGACTATA-TCCCAA- 3' Hira mmu-miR-467b beg:728 end:750 pic:3' GTATATGTACGT--CC-GTGAATG 5'& ||. ||||||| || .|| &5' -ATGAACATGCATTGGATAC---- 3' Hira mmu-miR-483star beg:686 end:705 pic:3' TTCTGCCCTCCCCTCCTCACT 5'& ..||| |||||||||. &5' GGGACA-GAGGGGAGGG---- 3' Hira mmu-miR-484 beg:270 end:290 pic:3' TAGCCCTCCCCTGACTCGGACT 5'& |||| .|||||||| &5' ---GGGATCTC-TTGAGCCTG- 3' Hira mmu-miR-503 beg:333 end:356 pic:3' GACGTCATGACAAGGGCGACGAT 5'& ||| ||.||| |.| ||||. &5' -TGCTGTGCTGCTTCAGCTGT-- 3' Hira mmu-miR-539 beg:697 end:715 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& .||| |||||||.. &5' -------GAGGGCAATTTCTTT 3' Hira mmu-miR-544 beg:16 end:38 pic:3' CTCGAACGATTTTTACGTCTTA 5'& ||| ||||. ||. ||||.| &5' -AGC-TGCTGCAAGGGCAGGA- 3' Hira mmu-miR-599 beg:442 end:459 pic:3' CAAACTATTTGACTGTGTT 5'& | |. |||||||| &5' ----GCTGTTCTGACACA- 3' Hira mmu-miR-669e beg:728 end:749 pic:3' TACTTGTACGTGTGTGTTCTGT 5'& |||||||||||. .||.| &5' ATGAACATGCATT----GGATA 3' Hira mmu-miR-677 beg:576 end:594 pic:3' AGTCT-TCGATTAGTAGTGACTT 5'& || ||||| ||||||| &5' ---GACAGCTA-----CACTGAA 3' Hira mmu-miR-681 beg:223 end:245 pic:3' TCGACGGAC-GGTCGCTCCGAC 5'& |||||. | |. .|.||||| &5' AGCTGTG-GACT--TGGGGCTG 3' Hira mmu-miR-682 beg:342 end:357 pic:3' GTCTGAAGTGACACTGACGTC 5'& .||||| .|||.| &5' ---GCTTCA-----GCTGTA- 3' Hira mmu-miR-688 beg:425 end:435 pic:3' CTTATTCATCAGCGGACGCT 5'& |||||.| &5' ------------GCCTGTG- 3' Hira mmu-miR-692 beg:84 end:105 pic:3' CTCACTCCGCGAG----TTTCTCTA 5'& .|||| | .|||||| &5' -----GGGCGGTAGTAGGAAGAGA- 3' Hira mmu-miR-705 beg:66 end:86 pic:3' ACGGGTGGGGTGGAGGGTGG 5'& ||. .|||||||| .|| &5' -GCTAGCCCCACCTGTCA-- 3' Hira mmu-miR-709 beg:245 end:263 pic:3' AGGAGGA-CGGAGACGGAGG 5'& |. | ||||||||. &5' ----CTGGGGCTCTGCCTT- 3' Hira mmu-miR-713 beg:334 end:357 pic:3' CGACAC-ACGGAAGTC-ACGT 5'& |||||| || |||||| ||.| &5' GCTGTGCTG-CTTCAGCTGTA 3' Hira mmu-miR-761 beg:248 end:268 pic:3' ACACAGTCAAAG-TGGGACGACG 5'& .| || .||.|||||| &5' ------GGGCTCTGCCTTGCTGC 3' Hira mmu-miR-874 beg:72 end:92 pic:3' AGCCAGGGAGCCCGGTCCCGTC 5'& ||| | |.||||||.| &5' -----CCCACCTGTCAGGGCGG 3' Hira mmu-miR-877star beg:683 end:707 pic:3' ACCC-TCCTCCCTCTTCTCCTGT 5'& ||| .||| |||..||||.|| &5' -GGGTGGGACAGAGGGGAGGGCA 3' Hira mmu-miR-880 beg:481 end:503 pic:3' AGA-TGAGTCTCTCCTACCTCAT 5'& || ||| || ||||||| &5' -CTAACTTGGAAT--ATGGAGT- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Hira; Tuple1 mmu-let-7b 324 352 UUGGUG-UGU---UGG-AUGAUGGAGU- :|||| :|| :|: |:||:|:||| UGCCACUGCAGGUGCUGUGCUGCUUCAG Hira; Tuple1 mmu-miR-101b 315 344 -GAA-GUCGAUAGUG----UCAUGACAU- || || ||: ||| :||:||||: ACUGGCAUCUGCCACUGCAGGUGCUGUGC Hira; Tuple1 mmu-miR-103 319 349 AGUAU-CGGGA-----CAUGUUACGACGA- ||| ||| ||:| :||||||| GCAUCUGCCACUGCAGGUGCUGUGCUGCUU Hira; Tuple1 mmu-miR-106a 127 143 AUGGACGUGACAAUCGUGAAAC ||||||| |||||| -UCCUGCACC---AGCACUA-- Hira; Tuple1 mmu-miR-107 324 349 ACUAUCGGGA-----CAUGUUACGACGA- ||| ||:| :||||||| ----UGCCACUGCAGGUGCUGUGCUGCUU Hira; Tuple1 mmu-miR-124a 317 341 -CCGUAA---GUGGCG--CACGGAAU ||||| |||:|| ||||: UGGCAUCUGCCACUGCAGGUGCUG-- Hira; Tuple1 mmu-miR-127 405 428 -CGGUUCGA--GUCUGCCUAGGCU- || ||: |||||||| |||| UGC--AGUCGGCAGACGGACCCGAA Hira; Tuple1 mmu-miR-129-3p 672 707 -UACGAAAA--ACCCCA-----------UUCCCGAA :||: |||||| :||||| UGUGUGGGGGGUGGGGUGGGACAGAGGGGAGGGCA- Hira; Tuple1 mmu-miR-133a 224 253 UGUCGAC-CA---ACUUC--CCCUGGUU- |||||| | || | |||||::: CCAGCUGUGGACUUGGGGCUGGGACUGGG Hira; Tuple1 mmu-miR-133b 239 272 AUCGACCAACUUCCCC------------UGGUU- :||||| |||| :|||: GGGCUGGGACU-GGGGCUCUGCCUUGCUGCCAGC Hira; Tuple1 mmu-miR-138 126 140 CUAAGUGUUGUGGUCGA || | :||||||| --GUC-CUGCACCAGCA Hira; Tuple1 mmu-miR-140 20 43 -GAUGGUA-UCCCAUUUUGGUGAC ||:|: |||| |::||||| GCUGCUGCAAGGGCAGGACCACA- Hira; Tuple1 mmu-miR-141 365 399 -GGUAGAAA----------UGGUCUGUCACAAU- ||||:| :||:|: ||||||| GCCAUUUGUGAGAGCAGGAGCCGGGGAGUGUUAG Hira; Tuple1 mmu-miR-149 371 391 CCUCACUUCUGUGCCUCGGUCU- ||||: :|| ||||||:|: --UGUGAGAGCA-GGAGCCGGGG Hira; Tuple1 mmu-miR-150 227 249 -GUGACCAUGU-UCCCAACCCUCU | ||| || :||| ||||| GCUGUGG-ACUUGGGGCUGGGAC- Hira; Tuple1 mmu-miR-15a 318 349 GUGUU--UGGUAAU-------ACACGACGAU :|| :||| |: ||||||||| GGCAUCUGCCACUGCAGGUGCUGUGCUGCUU Hira; Tuple1 mmu-miR-15b 308 349 ACAUU------------UGGU-------ACUACACGACGAU |||: :||| || ||||||||| GGUAGACACUGGCAUCUGCCACUGCAGGUGCUGUGCUGCUU Hira; Tuple1 mmu-miR-16 324 349 GCGGUUAUAA--AUG-CACGACGAU |||| |:| |||||||| UGCCACUGCAGGUGCUGUGCUGCUU Hira; Tuple1 mmu-miR-17-3p 329 348 -AUGUUCACGGGAGUGACGUCA |:||:||||: | :|||| CUGCAGGUGCUGU-GCUGCU-- Hira; Tuple1 mmu-miR-183 313 344 -GUCACUUAAGAUGG------UCACGGUAU- || ||: |||:|| :||||::|: ACACUGGCAUCUGCCACUGCAGGUGCUGUGC Hira; Tuple1 mmu-miR-185 284 297 CUUGACGGAAAGAGAGGU- |||| |||||| ----AGCCUG--UCUCCAG Hira; Tuple1 mmu-miR-188 257 279 -UGGGA-GGUGGUACGUUCCCUAC :||:| |::||| ||| ||||| UGCCUUGCUGCCA-GCA-GGGAUC Hira; Tuple1 mmu-miR-193 227 247 -GAC-CCUGAAACAUCCGGUCAA ||| |||||| :|||::| GCUGUGGACUUG--GGGCUGGG- Hira; Tuple1 mmu-miR-194 493 512 AGGUGUACCUCAACGACAAUGU |:|||||||| |||||: --AAUAUGGAGUUUCUGUUGG- Hira; Tuple1 mmu-miR-195 324 349 -CGGUUAUAAA---GACACGACGAU |||| |||||||||| UGCCACUGCAGGUGCUGUGCUGCUU Hira; Tuple1 mmu-miR-200a 377 399 -UGUAGCAAUGGUCUGUCACAAU- :|| | :||:|: ||||||| AGCA--GGAGCCGGGGAGUGUUAG Hira; Tuple1 mmu-miR-204 677 703 GUCCGUAUCCUA--CUGUUUCCCUU- :|| :|:||:| ||||:||||:| GGGGGGUGGGGUGGGACAGAGGGGAG Hira; Tuple1 mmu-miR-207 678 704 -CUCC-CUCCUCUCGGUC-CUCUUCG |:|| |:|| |:| ||| |:|:|| GGGGGUGGGGUGGGACAGAGGGGAGG Hira; Tuple1 mmu-miR-20a 127 143 GAUGGACGUGAUAUUCGUGAAAU ||||||| |||||| --UCCUGCACC---AGCACUA-- Hira; Tuple1 mmu-miR-20b 127 143 AUGGACGUGAUACUCGUGAAAC ||||||| |||||| -UCCUGCACC---AGCACUA-- Hira; Tuple1 mmu-miR-211 678 703 -UCCGUUUCCUA-CUGUUUCCCUU- :|| ::|| ||||:||||:| GGGGGUGGGGUGGGACAGAGGGGAG Hira; Tuple1 mmu-miR-212 239 260 -CCGGCACUGACCUCU-GACAAU |||:| ||||||:| ||| GGGCUGGGACUGGGGCUCUGC-- Hira; Tuple1 mmu-miR-214 322 357 -GACGGA------CA-GACACGGA-----CGACA- ||||| || ||||||: ||||| UCUGCCACUGCAGGUGCUGUGCUGCUUCAGCUGUA Hira; Tuple1 mmu-miR-216b 264 284 AGUGUAAACGGACGUCUCUAAAGGG- |||| ||||:||| ||:: ------CUGCCAGCAGGGAUCUCUUG Hira; Tuple1 mmu-miR-217 384 412 UAGGUCAGUCAAGG-----ACUACGUCAU ||:| ||| ||||||||| -GCCGGGGAGUGUUAGGGAUGAUGCAGUC Hira; Tuple1 mmu-miR-22 31 63 -UGUCAAGAAGU--------UGACCGUCGAA- :||| | || |||||||| || GGCAGGACCACACUAUUGCCACUGGCAGGUUG Hira; Tuple1 mmu-miR-23a 102 125 CCUUUAGGGACCGU----UACACUA ||:| ||:||||| ||||| AGAGA-CCUUGGCAGAAGAUGUGU- Hira; Tuple1 mmu-miR-24 342 370 -GACAAGGACGAC-UUG---ACUCGGU- ||| |:| |||| ||| ||||||| GCUGCUUCAGCUGUAACGAAUGAGCCAU Hira; Tuple1 mmu-miR-24* 286 318 UGACUAUAGUCGAG--------UCAUCCGUG- ||| |||||: :|||| ||| CCUGUCUCCAGCUUGACCCCAAGGUAGACACU Hira; Tuple1 mmu-miR-25 689 710 AGUCUGGCUCUGUUCACGUUAC :||| |||: :|| ||||| -GGGACAGAGGGGAGGGCAAUU Hira; Tuple1 mmu-miR-295 186 209 UCUGAG-UUUUCAUCAUCGU-GAAA ||||| ||||| :||| ||| UGACUCCAAAAGGG--GGCAGCUUG Hira; Tuple1 mmu-miR-296 688 707 UGUCCUAACUCCCC-CCCGGGA :||| |||||| |||| -UGGGACAGAGGGGAGGGCA-- Hira; Tuple1 mmu-miR-298 238 270 -CCU--UCUUG---UCGGGA-GGA--GACGG- ||: :|:|| :||:|| ||| ||||| GGGGCUGGGACUGGGGCUCUGCCUUGCUGCCA Hira; Tuple1 mmu-miR-29b 311 342 -UUGUGACUAAAGUUUA------CCACGAU- :||||||: || ||||||: AGACACUGGCAUCUGCCACUGCAGGUGCUGU Hira; Tuple1 mmu-miR-301 22 56 -CGAAA---CUGUUA-----UGAUAAC-GUGAC- ||| |:||: ||||||| ||||| UGCUGCAAGGGCAGGACCACACUAUUGCCACUGG Hira; Tuple1 mmu-miR-301b 21 56 -ACGAAA---CUGUUA-----UGGUAAC-GUGAC- |||| |:||: ||:|||| ||||| CUGCUGCAAGGGCAGGACCACACUAUUGCCACUGG Hira; Tuple1 mmu-miR-31 251 290 GUCGAU--------ACGGUCGU------AGAA--CGGA- :||| |||||||| |||| |||| GGGCUCUGCCUUGCUGCCAGCAGGGAUCUCUUGAGCCUG Hira; Tuple1 mmu-miR-320 205 231 AAGC-GGGAGAGU-----UGGGUCGAAAA |:| ||||| || :||||||| CUUGUCCCUC-CAUGUAGGCCCAGCUG-- Hira; Tuple1 mmu-miR-324-3p 223 248 -GGUCGU--CGUGGACCCCGUCACC- ||||| | ||:|||||| | || CCCAGCUGUGGACUUGGGGCUG-GGA Hira; Tuple1 mmu-miR-324-5p 383 409 GUGGUUA--CGGGAUCCC--CUACGC :||:: |: :||||| ||||| AGCCGGGGAGUGUUAGGGAUGAUGCA Hira; Tuple1 mmu-miR-325 9 33 UGUGAAUGAC-UCGUGGAUGAUCC- :|||:| ||| ||:| ||| -GGCUUGCCUCAGCUGCUGCAAGGG Hira; Tuple1 mmu-miR-328 673 697 UGC-CUUCCCGUCUCUCCCGGUC- :| | |||::|:| ||| ||| GUGUGGGGGGUGGGGUGGGACAGA Hira; Tuple1 mmu-miR-329 373 398 UUUUUCCAA-UCGA-CCCACACAA- :|:|| ||| ||| ||||| UGAGAGCAGGAGCCGGGGAGUGUUA Hira; Tuple1 mmu-miR-330 328 348 AGAGACGUCCGGGACACGAAACG- |||||||: ||||||| || --ACUGCAGGUGCUGUGCU--GCU Hira; Tuple1 mmu-miR-331 217 244 AAGAUCCUAUCCGGGU-----------CCCCG- :|||||||| ||||| ------UGUAGGCCCAGCUGUGGACUUGGGGCU Hira; Tuple1 mmu-miR-337 196 232 -UUUCCGUA----------GUAUAUCC---UCGACUU :::|||| |||:|||| ||||| AGGGGGCAGCUUGUCCCUCCAUGUAGGCCCAGCUGU- Hira; Tuple1 mmu-miR-339 146 169 ACUCGA-GGACCU-CCUGUCCCU- ||:| |||||: ||||| ||| -CAGUUCCCUGGGUGGACAUGGAC Hira; Tuple1 mmu-miR-340 226 254 CCGAUAUUUCA---UUGACUCUG-CCU- |||:|::| ::|||:||| ||: AGCUGUGGACUUGGGGCUGGGACUGGGG Hira; Tuple1 mmu-miR-342 415 439 -CUGCCCACGCUAAAGACACACUCU ||||| ||| |||||||| AGACGGACCCGAAGCCUGUGUGAA- Hira; Tuple1 mmu-miR-345 226 247 -CGUGACCUGAUCCCCAGUCGU || |||||| |||| ::| AGCUGUGGACUUGGGGCUGGG- Hira; Tuple1 mmu-miR-34a 229 271 -UUGUUGG---UCGAUUCUG--------------UGACGGU : :||: :|||::||| :|||||| UGUGGACUUGGGGCUGGGACUGGGGCUCUGCCUUGCUGCCAG Hira; Tuple1 mmu-miR-34b 239 263 GUUAGUCGAUUAA-----UGUGACGGAU :|||:: :| |||||| ----GGGCUGGGACUGGGGCUCUGCCUU Hira; Tuple1 mmu-miR-351 238 278 GUCCGAGUU---UCCCGAGGA------------GUCCCU- :|||| :: :||||||: |||||| GGGGCUGGGACUGGGGCUCUGCCUUGCUGCCAGCAGGGAU Hira; Tuple1 mmu-miR-369-5p 491 519 GCUUAUAUUGU-------GCCAGCUAGA ||||||:: :|||:|||| GGAAUAUGGAGUUUCUGUUGGUUGAUCA Hira; Tuple1 mmu-miR-370 245 276 -UUGGUCCA-AGGUGG------GGUCGUCCG :||::|| ||::|| |||||||| GGACUGGGGCUCUGCCUUGCUGCCAGCAGGG Hira; Tuple1 mmu-miR-377 660 680 UGUUUUCAACGGAAACACACUA ||:|| |||||||||: -AAAGAGACA-CUUUGUGUGGG Hira; Tuple1 mmu-miR-378 377 402 UGUGUCCU-GGA-CCUCA--GUCCUC :||||| || ||||| :|||: -AGCAGGAGCCGGGGAGUGUUAGGGA Hira; Tuple1 mmu-miR-412 679 705 UGCCGAUCA---CCUGG--UCCACUUCA || |:| |||| :|| ||:| -GGGGUGGGGUGGGACAGAGGG-GAGGG Hira; Tuple1 mmu-miR-422b 178 213 CCGGAAG-ACUGAGGUU-------------CAGGUC |||| ||||||||| |||| AGCCUCCAUGACUCCAAAAGGGGGCAGCUUGUCCC- Hira; Tuple1 mmu-miR-423 227 257 -GACU------CCCCGGAGUCUGGCUC-GA- ||| |||||: :|||:|:| || GCUGUGGACUUGGGGCUG-GGACUGGGGCUC Hira; Tuple1 mmu-miR-424 422 450 AGGUUUUG----UACUUAACGA--CGAC- ||:||:| :||||| ||| |||| CCCGAAGCCUGUGUGAAU-GCUAAGCUGU Hira; Tuple1 mmu-miR-449 292 330 UGGUCGA-------------UUGUUA-UGU-GACGGU- |||||| :||| :|| |||||| UCCAGCUUGACCCCAAGGUAGACACUGGCAUCUGCCAC Hira; Tuple1 mmu-miR-449b 292 329 -GGUCGA---------UCGUUA-----CGU-GACGGA |||||| :|:|: ||| ||||| UCCAGCUUGACCCCAAGGUAGACACUGGCAUCUGCCA Hira; Tuple1 mmu-miR-455-3p 216 244 UCACAUAUACGGG----CACCUGA----CGUA |||| |||| ||||||| || -AUGUAG--GCCCAGCUGUGGACUUGGGGCU- Hira; Tuple1 mmu-miR-464 216 241 -AUAGA-GUGUCU-UAUUUGAACCAU |:| | ||| :|::|||||| AUGUAGGCCCAGCUGUGGACUUGGG- Hira; Tuple1 mmu-miR-469 158 205 -CCUGU-----------GGUUCU-AGUUACU-------UUCUCCGU ||||| ||||| || |||| |:|:|||| UGGACAUGGACUAUAUCCCAAGCCUCCAUGACUCCAAAAGGGGGCAG Hira; Tuple1 mmu-miR-483 684 706 UGUUCUGCC---CUCCCCUCCUCACU ::| || |||||||||: -GGGGUGGGACAGAGGGGAGGGC--- Hira; Tuple1 mmu-miR-484 235 257 UAGCCCUC-CCCUGACUCGGACU |:|||: |||||||:| || CUUGGGGCUGGGACUGGGGCUC- Hira; Tuple1 mmu-miR-485-5p 3 20 CUUAAGUAGUGCCGGUCGGAGA :|| :|||: ||||| -----UGUCCUGGCUUGCCUCA Hira; Tuple1 mmu-miR-490 267 302 -GUCGUACCU------------CAGGAGGUCCAAC- ||||| ||| ||| ||||| ||| CCAGCAGGGAUCUCUUGAGCCUGUC-UCCAGCUUGA Hira; Tuple1 mmu-miR-497 318 349 AUGUU--UGGUGUC-------ACACGACGAC :|| :|||| | ||||||||| GGCAUCUGCCACUGCAGGUGCUGUGCUGCUU Hira; Tuple1 mmu-miR-500 51 72 -GACUUGGG-AACGGGUCCACGUA ||| :| ||||||||| || ACUG-GCAGGUUGCCCAGG-GCU- Hira; Tuple1 mmu-miR-501* 125 163 GUUUAGGAA-----------CGGG--------CCCACGUAA :|||| |||| ||||| | --UGUCCUGCACCAGCACUAGCCCAGUUCCCUGGGUGGAC- Hira; Tuple1 mmu-miR-503 330 356 -CGU-CAUGACAAGGGCGA---CGAU- ||| ||:|||| |:||| |||: UGCAGGUGCUGUG-CUGCUUCAGCUGU Hira; Tuple1 mmu-miR-540 241 263 -GGUCCU-AGCUGGAGACUGGA- |::||| | |: ||||| ||| GCUGGGACUGGGGCUCUG-CCUU Hira; Tuple1 mmu-miR-541 261 284 -ACACUGGUUGUAGUCUUAGGGAA- || :|||:|| :|:|||:||| UUGCUGCCAGCA--GGGAUCUCUUG Hira; Tuple1 mmu-miR-546 251 271 -CUGAGGC---ACGGUGGUA |:|||:| |||::||| GGGCUCUGCCUUGCUGCCAG Hira; Tuple1 mmu-miR-615 237 258 UUCUCC--CUCUGGGUCCGAGCCU |:|| |:|||: :||||| -UGGGGCUGGGACUGGGGCUCU-- Hira; Tuple1 mmu-miR-665 271 296 AUUCCCUGGAGU-------CGGAGGACCA |||||:||| |:|||| -CAGGGAUCUCUUGAGCCUGUCUCCA--- Hira; Tuple1 mmu-miR-667 682 708 GAACCCGACCCA-----CCGUCCACAGU- |||| |||| || ||| || -GUGGGGUGGGACAGAGGGGAGGG--CAA Hira; Tuple1 mmu-miR-668 677 708 -CCAUCACCCGGCUCGG-CUCA----CUGU- || :||||| :|:| ||| |:|| GGGGGGUGGGGUGGGACAGAGGGGAGGGCAA Hira; Tuple1 mmu-miR-670 72 90 AAGUGGUGUAUGUGAGUCCCUA :|| || | |||||| --AGCCCCAC-CUGUCAGGGC- Hira; Tuple1 mmu-miR-671 63 91 -GGA---GGUCGGGGA----GGUCCCGAAGGA || |:|||||| :|||||| CCCAGGGCUAGCCCCACCUGUCAGGGCG---- Hira; Tuple1 mmu-miR-673 211 235 -GAGGU---UCCUGGUCUCGACACUC ||||| ||| || |||||||: CCUCCAUGUAGGCCC--AGCUGUGGA Hira; Tuple1 mmu-miR-674* 238 260 AACAAGACUCU-ACCCUCGACAC- | |||:|| |||| ||| || -GGGGCUGGGACUGGG-GCUCUGC Hira; Tuple1 mmu-miR-676 67 93 -UCGAGUUGU--UGG--AGUCCUGCC- :||| |:| ||| |||||:||| GGGCU-AGCCCCACCUGUCAGGGCGGU Hira; Tuple1 mmu-miR-681 251 277 -UCG--ACGG----ACGGUCGCUCCGAC :|| |||| ||||||| :|| GGGCUCUGCCUUGCUGCCAGCAGGGA-- Hira; Tuple1 mmu-miR-682 231 255 GUCUGAAG--UGACACUGACGUC- :||||| :||| ||||| :| UGGACUUGGGGCUGGGACUGGGGC Hira; Tuple1 mmu-miR-683 243 276 CUCCUGUGU-----------CGAAUGUCGUCC- :|||| : ||| ||||||| UGGGACUGGGGCUCUGCCUUGCUGCCAGCAGGG Hira; Tuple1 mmu-miR-687 16 39 -AGUA-ACGACGUAAG-GUCCUAUC ||| ||||||| ||||| CUCAGCUGCUGCAAGGGCAGGAC-- Hira; Tuple1 mmu-miR-689 250 279 -CCUGGGGCGGC-------UCGCCCCUGC ||:|:|:||| ||| ||||: GGGGCUCUGCCUUGCUGCCAGCAGGGAUC Hira; Tuple1 mmu-miR-690 57 77 AAACCAACAC--UCGGAUCGGAAA ||||| :| |||||| --AGGUUGCCCAGGGCUAGCCC-- Hira; Tuple1 mmu-miR-691 254 279 AAAAGACGGAGAGAA----GUCCUUA- |||||||: || ||||:|| --CUCUGCCUUGCUGCCAGCAGGGAUC Hira; Tuple1 mmu-miR-693-5p 225 246 CUUUUGAAAGCCU--ACACCGAC- |:|| ||| || ||||| --CAGCUGU-GGACUUGGGGCUGG Hira; Tuple1 mmu-miR-695 134 152 AAGUCAGUGGAUACGGGUUAGA ||| |||: |||||:|: -CCAG-CACUA--GCCCAGUUC Hira; Tuple1 mmu-miR-699 238 263 GCUCGGUCCAG----CGUGACGGA- |:||::|| || |||||| GGGGCUGGGACUGGGGCUCUGCCUU Hira; Tuple1 mmu-miR-702 679 708 -CUCGCCCCA------UUUCCCACCCGU- |:|:||||| :|:||| ||||| GGGGUGGGGUGGGACAGAGGGGAGGGCAA Hira; Tuple1 mmu-miR-705 60 87 -ACGGG-------UGGGGUGGAGGGUGG ||||| :|||||||| :|| UUGCCCAGGGCUAGCCCCACCUGUCAG- Hira; Tuple1 mmu-miR-709 276 296 AGGAGGACGGAGACGGAGG- :|||:|| |||:|||| AUCUCUUGAGCCUGUCUCCA Hira; Tuple1 mmu-miR-710 201 241 GAGUUGAGA---GGGGU---------------UCUGAACC ||:||: |:||| :||||||| -GCAGCUUGUCCCUCCAUGUAGGCCCAGCUGUGGACUUGGG Hira; Tuple1 mmu-miR-713 336 358 -CGACAC-ACGGAAGUC-ACGU- |||||| ||| ||||| ||:| UGCUGUGCUGC-UUCAGCUGUAA Hira; Tuple1 mmu-miR-718 664 694 GCUGUGGG---------CCGGCCCGCCUUC |||||:: ||: |||:||:| AGACACUUUGUGUGGGGGGUGGGGUGGGAC Hira; Tuple1 mmu-miR-744 240 266 -CGACAA-----UCGGGAUCGGGGCGU |||| :||:|| ||| || GGCUGGGACUGGGGCUCU-GCCUUGCU Hira; Tuple1 mmu-miR-758 538 554 AUCACCUGGU-CCAGUGUUU ||||| |||||| --UUGGACAUUGGUCACU-- Hira; Tuple1 mmu-miR-761 2 29 ACACAGU-CAAAGUGG----GACGACG- |||| | |::|| ||||||| -CUGUCCUGGCUUGCCUCAGCUGCUGCA Hira; Tuple1 mmu-miR-762 1 26 CGAGACAGGGCCG----GGGUCGGGG- |||||||:||| |:||||: | --UCUGUCCUGGCUUGCCUCAGCUGCU Hira; Tuple1 mmu-miR-763 47 73 -CGGUGACCAAGAA--GGGU--CGACC |||||||| |||| ||| UGCCACUGGCAGGUUGCCCAGGGCUA- Hira; Tuple1 mmu-miR-770-3p 201 228 GGUCG-------AGGUGCAGUCCGGGUGC |||| ||||:| :||||||| GCAGCUUGUCCCUCCAUG-UAGGCCCAG- Hira; Tuple1 mmu-miR-801 122 146 -CAGCUAAGGCGUG--CGUG-UCGUUAG ||:| |:|||| |||| ||| UGUUGUC-CUGCACCAGCACUAGCC--- Hira; Tuple1 mmu-miR-9 735 754 -GUAUGUCGAUCUAUUGGUUUCU |||:|| :|:||| ||||| ACAUGCA-UUGGAU-ACCAAA-- Hira; Tuple1 mmu-miR-93 127 143 GAUGGACGUGCUUGUCGUGAAAC ||||||| ||||||| --UCCUGCAC---CAGCACUA-- Hira; Tuple1 mmu-miR-98 326 352 UUGUUAUGU---UGA-AUGAUGGAGU- || |:|| :|| |:||:|:||| -CCACUGCAGGUGCUGUGCUGCUUCAG Hira; Tuple1 mmu-miR-138 132 139 CUA---------------------------AGUGUUGUGGUCGA || | :||||||| GGAAGAGAGACCUUGGCAGAAGAUGUGUUGUC-CUGCACCAGCA Hira; Tuple1 mmu-miR-15a 341 348 --------------GUGUUUGGUAAU-------ACACGACGAU ||: :||| |: ||||||||| AAGGUAGACACUGGCAUCUGCCACUGCAGGUGCUGUGCUGCUU Hira; Tuple1 mmu-miR-15b 341 348 A--CAUUUGG-------------------UACUACACGACGAU |||:|| :|| ||||||||| AAGGUAGACACUGGCAUCUGCCACUGCAGGUGCUGUGCUGCUU Hira; Tuple1 mmu-miR-16 341 348 ------------------GCGGUUA----UAAAUGCACGACGAU :|||| :| :|||||||| AAGGUAGACACUGGCAUCUGCCACUGCAGGUGC-UGUGCUGCUU Hira; Tuple1 mmu-miR-17-3p 328 335 A-------------------------UGUUCACGGGAGUGACGUCA :|| ||| |||||||| CCAGCUUGACCCCAAGGUAGACACUGGCAUCUGC---CACUGCAGG Hira; Tuple1 mmu-miR-195 341 348 -------------------CGGUUAUAAA---GACACGACGAU |||| |||||||||| AAGGUAGACACUGGCAUCUGCCACUGCAGGUGCUGUGCUGCUU Hira; Tuple1 mmu-miR-199a 313 320 CUUG-------------------------UCCAUCAGACUUGUGACCC ||||| :||||||| CUCUUGAGCCUGUCUCCAGCUUGACCCCAAGGUA-----GACACUGGC Hira; Tuple1 mmu-miR-199b 313 320 -----CUUGUCCAUCAG------------------AUUUGUGACCC ||:| ||| ||:||||||| CUCUUGAGCCU---GUCUCCAGCUUGACCCCAAGGUAGACACUGGC Hira; Tuple1 mmu-miR-217 404 411 UA--------------GGUCAGUCAAGG-----ACUACGUCAU ||:| ||| ||||||||| UUUGUGAGAGCAGGAGCCGGGGAGUGUUAGGGAUGAUGCAGUC Hira; Tuple1 mmu-miR-22 200 207 UGUCAA------------------GAAGUUGA---CCGUCGAA || ||| |||||||| GGACUAUAUCCCAAGCCUCCAUGACUCCAAAAGGGGGCAGCUUG Hira; Tuple1 mmu-miR-346 412 419 ----UCUCCGUC-----------------CGUGAGCCCGUCUGU :||| |:| ||| || |||||||: AGCAGGAGCCGGGGAGUGUUAGGGAUGAUGCAGUC-GGCAGACGG Hira; Tuple1 mmu-miR-370 268 275 -------------UUGGUCCA-AGGUGG------GGUCGUCCG :|| || || || |||||||| GACUUGGGGCUGGGACUGGGGCUCUGCCUUGCUGCCAGCAGGG Hira; Tuple1 mmu-miR-377 431 438 ---------------------UGUUUU--CAACGGAAACACACUA ||::| | ||| ||||||| UAGGGAUGAUGCAGUCGGCAGACGGACCCGAAGCC--UGUGUGAA Hira; Tuple1 mmu-miR-424 341 348 A-------------------GGUUUUGUACUUA--ACGACGAC ||| :|| ||||||| AAGGUAGACACUGGCAUCUGCCACUGCAGGUGCUGUGCUGCUU Hira; Tuple1 mmu-miR-484 283 290 UAGCCCUC------------------CCCU----GACUCGGACU :|||: |||| :|||||||| C-UGGGGCUCUGCCUUGCUGCCAGCAGGGAUCUCUUGAGCCUGU Hira; Tuple1 mmu-miR-497 341 348 ------------------AUGUUUGGUGUC----ACACGACGAC |:| || ||| ||||||||| AAGGUAGACACUGGCAUCUGCC-ACUGCAGGUGCUGUGCUGCUU Hira; Tuple1 mmu-miR-707 184 191 GC---AUCC------------------GUUCGCC-GUACUGAC |:|| ||||| ||||||| UUCCCUGGGUGGACAUGGACUAUAUCCCAAGCCUCCAUGACUC Hira; Tuple1 mmu-miR-763 224 231 C------------------------GGUGACCAAGAAGGGUCGACC |||: |||||||| CUCCAAAAGGGGGCAGCUUGUCCCUCCAUGUAGG---CCCAGCUGU Hira; Tuple1 mmu-miR-101b 320 342 GAAGUCGAUAGUGU-CAUGACAu | || || | ::|| ||:|||| CATCTGCCACTGCAGGTGCTGTg Hira; Tuple1 mmu-miR-106a 126 144 auGGACGUGACAAUCGUGAaac ||||||| |||||| gtCCTGCAC---CAGCACTagc Hira; Tuple1 mmu-miR-107 320 347 acuauCGG-GA----CAUGUUACGACGA ||| || ||:| :||||||| catctGCCACTGCAGGTGCTGTGCTGCT Hira; Tuple1 mmu-miR-124a 318 349 CCGUA-A--GUGGCG-------CACG--GAAu ||||| | |||:|| |||| ||| GGCATCTGCCACTGCAGGTGCTGTGCTGCTTc Hira; Tuple1 mmu-miR-129-3p 686 707 uacgaaaaaCCCCAUUCCCGaa | || :||||| ggtgggacaGAGGGGAGGGCaa Hira; Tuple1 mmu-miR-132 232 253 gCUG-GUACCGACAUCUGACaau ||| :: ||||| :||||| gGACTTGGGGCTG-GGACTGggg Hira; Tuple1 mmu-miR-133b 225 251 aUCG--ACC--AACUUC--CCCUGguu ||| ||| |||::| ||||| cAGCTGTGGACTTGGGGCTGGGACtgg Hira; Tuple1 mmu-miR-140 21 43 GAUG--GUAUCCCAUUUUGGUGac ||:| || |||| |::||||| CTGCTGCA-AGGGCAGGACCACac Hira; Tuple1 mmu-miR-141 376 397 gguagaaauGGUCUGUCACAAU ||:|: ||||||| gagcaggagCCGGGGAGTGTTA Hira; Tuple1 mmu-miR-149 369 389 ccuCACUUCUGUGCCUCGGUCu ||||: :|| ||||||:| tttGTGAGAGCA-GGAGCCGGg Hira; Tuple1 mmu-miR-150 225 249 GU-GAC-CAUG-UUCCCAACCCUcu || ||| | || :||| ||||| CAGCTGTGGACTTGGGGCTGGGAct Hira; Tuple1 mmu-miR-15a 327 348 GUGUUUGGUAAUACACGACGAu ||| : :| ||||||||| CACTGCAGGTGCTGTGCTGCTt Hira; Tuple1 mmu-miR-15b 327 348 acauuugguACUACACGACGAu || ||||||||| cactgcaggTGCTGTGCTGCTt Hira; Tuple1 mmu-miR-16 324 348 gCGGUUA--UAAAUG-CACGACGAu |||| | | |:| |||||||| tGCCACTGCAGGTGCTGTGCTGCTt Hira; Tuple1 mmu-miR-17-3p 312 335 aUGUUCACG-GGA--GUGACGUCa ||| || :|| |||||||| gACACTGGCATCTGCCACTGCAGg Hira; Tuple1 mmu-miR-183 314 342 GUCACUUAAGAUGGU------CACGGUAu || ||: |||:||| ||||::| CACTGGCATCTGCCACTGCAGGTGCTGTg Hira; Tuple1 mmu-miR-185 275 295 CUUGA-----CGGAAAGAGAGGU || || ||| | |||||| GATCTCTTGAGCC--TGTCTCCA Hira; Tuple1 mmu-miR-188 251 278 uggGAGGUGGUACG------UUCCCUAc |||::|| ||| |||||| gggCTCTGCCTTGCTGCCAGCAGGGATc Hira; Tuple1 mmu-miR-193 228 247 GAC-CCUGAAACAUCCGGUCaa ||| |||||| | |||::| CTGTGGACTTGG--GGCTGGga Hira; Tuple1 mmu-miR-194 491 512 aggUGUACCUCAACGACAAugu |:|||||||| ||||| ggaATATGGAGTTTCTGTTggt Hira; Tuple1 mmu-miR-195 325 348 CGGUUA---UAAAGACACGACGAu |||| | : | |||||||||| GCCACTGCAGGTGCTGTGCTGCTt Hira; Tuple1 mmu-miR-199a 300 320 CUUG---UCCAUCAGACUUGUGACCc || | |||||| ||||||| GACCCCAAGGTAG-----ACACTGGc Hira; Tuple1 mmu-miR-199b 300 320 CUUG---UCCAUCAGAUUUGUGACCc || | |||||| ||||||| GACCCCAAGGTAG-----ACACTGGc Hira; Tuple1 mmu-miR-200a 376 397 uguagcaauGGUCUGUCACAAU ||:|: ||||||| gagcaggagCCGGGGAGTGTTA Hira; Tuple1 mmu-miR-207 679 704 CUCC-CUCCUCUCGG--UCCUCUUCg |:|| |:|| |:| | |||:||:| GGGGTGGGGTGGGACAGAGGGGAGGg Hira; Tuple1 mmu-miR-20a 125 144 gauGGACGUGAUAUUCGUGAaau ||||||| |||||| tgtCCTGCAC---CAGCACTagc Hira; Tuple1 mmu-miR-20b 126 144 auGGACGUGAUACUCGUGAaac ||||||| |||||| gtCCTGCAC---CAGCACTagc Hira; Tuple1 mmu-miR-211 680 701 uCCGUUUCCUACUGUUUCCCUU ||::::| : ||||:||||:| gGGTGGGGTGGGACAGAGGGGA Hira; Tuple1 mmu-miR-212 232 253 CCGG--CACUGACCUCUGACaau || | | |:|||| ||||| GGACTTGGGGCTGG-GACTGggg Hira; Tuple1 mmu-miR-214 329 355 GACG-----GACA-GACACGGACGACA |||| |||| ||| :| ||||| CTGCAGGTGCTGTGCTGCTTCAGCTGT Hira; Tuple1 mmu-miR-216b 255 282 AG-UGUAA--ACGGACGUCUCUAAAGgg || :| || |||| ||||:||| || TCTGCCTTGCTGCCAGCAGGGATCTCtt Hira; Tuple1 mmu-miR-217 383 411 UAGGUCAGUCAAGG-----ACUACGUCAu | ||:| ||| :: ||||||||| AGCCGGGGAGTGTTAGGGATGATGCAGTc Hira; Tuple1 mmu-miR-22 183 207 uGUCAAGAAGUU---GACCGUCGAA || || ||| |||||||| cCATGACTCCAAAAGGGGGCAGCTT Hira; Tuple1 mmu-miR-22 40 61 UGUCAAGAAGUUGACCGUCGAA ||| | :| | |||||||| || ACACTATTGCCACTGGCAGGTT Hira; Tuple1 mmu-miR-22 17 38 uGUC-AAGAAGUUGACCGUCgaa ||| | || ||| ||||| tCAGCTGCTGCAA-GGGCAGgac Hira; Tuple1 mmu-miR-23a 102 125 cCUUUAGGGACCG----UUACACua ||:| ||:|||| :||||| aGAGA-CCTTGGCAGAAGATGTGtt Hira; Tuple1 mmu-miR-24 343 368 GACAAGGACGAC----UUGACUCGGU ||| |:| |||| :| ||||||| CTGCTTCAGCTGTAACGAATGAGCCA Hira; Tuple1 mmu-miR-24 323 345 GACAAGGACGACU-UGACUCGgu ||| |||| |: :||| || CTGCCACTGCAGGTGCTGTGCtg Hira; Tuple1 mmu-miR-25 688 709 AGUCUGGCUCUGUUCACGUUAc | :||| |||: :|| ||||| TGGGACAGAGGGGAGGGCAATt Hira; Tuple1 mmu-miR-296 687 708 uguCCUAACUCCCC-CCCGgga ||| |||||| |||| gtgGGACAGAGGGGAGGGCaat Hira; Tuple1 mmu-miR-298 244 268 CCUUCUUGUCGGGA-GGA--GACGG ||:| : :||:|| ||| ||||| GGGACTGGGGCTCTGCCTTGCTGCC Hira; Tuple1 mmu-miR-29b 312 340 uUGUGAC--UAAA--GU--UUACCACGAu |||||| || | || : |||||| gACACTGGCATCTGCCACTGCAGGTGCTg Hira; Tuple1 mmu-miR-301 31 54 cgaaaCUGUUAUGAUAAC-GUGAC ||| | ||||||| ||||| ggcagGACCACACTATTGCCACTG Hira; Tuple1 mmu-miR-301b 30 54 acgaaaCUGUUAUGGUAAC-GUGAC ||| | ||:|||| ||||| gggcagGACCACACTATTGCCACTG Hira; Tuple1 mmu-miR-31 261 288 guCGAUACGGUCGU------AGAA--CGGA || |||||||| |||| |||| ttGC--TGCCAGCAGGGATCTCTTGAGCCT Hira; Tuple1 mmu-miR-320 206 232 AAGCGGGAG----AGUUGGGUCGAAAa || ||||| | ::||||||| | TTGTCCCTCCATGTAGGCCCAGCTGTg Hira; Tuple1 mmu-miR-320 179 209 aaGCGG----GAGAGUU-----GGGUCGAAaa | || ||| ||| |||||| gcCTCCATGACTC-CAAAAGGGGGCAGCTTgt Hira; Tuple1 mmu-miR-324-3p 224 247 GGUCGUCG--UGGACCCCGUCACc ||||| |: ||:|||||| | | CCAGCTGTGGACTTGGGGCTGGGa Hira; Tuple1 mmu-miR-324-5p 387 405 guggUUACGGGAUCCCCUACgc |:|| :|| |||||| ggggAGTG--TTA-GGGATGat Hira; Tuple1 mmu-miR-325 8 31 uguGAAU-GACUCGUGGAUGAUCC |||: || ||| ||:| ||| tggCTTGCCTCAGCTGCTGCAAGG Hira; Tuple1 mmu-miR-328 683 708 ugCCUUCCC-GUCU---CUCCCGGUc ||: ||| |||| |||||| | tgGGGTGGGACAGAGGGGAGGGCAAt Hira; Tuple1 mmu-miR-329 376 396 uUUUUCCAAUC-GACCCACACAA |: ||| || | ||| ||||| gAGCAGG--AGCCGGGGAGTGTT Hira; Tuple1 mmu-miR-330 326 343 aGAGACGUCCGGGACACGAAACG | |||||| ||||| ||| cCACTGCAG-----GTGCTGTGC Hira; Tuple1 mmu-miR-331 222 242 aaGAUCCUAUCCGGGUCCCCG | || || |: ||||| gcCCAGCTGTGGACTTGGGGC Hira; Tuple1 mmu-miR-337 218 246 uuUCC--GUAG-UAU---AUCCUCGACuu ||| || | :|: | ||:|||| gtAGGCCCAGCTGTGGACTTGGGGCTGgg Hira; Tuple1 mmu-miR-339 145 167 acUCGA-GGACCU-CCUGUCCCU ||:| |||||: ||||| ||| ccAGTTCCCTGGGTGGACATGGA Hira; Tuple1 mmu-miR-342 416 439 CUGCCCACGCUAAAGACACACUcu ||||| ||| |||||||| GACGGACCCGAAGCCTGTGTGAat Hira; Tuple1 mmu-miR-345 239 260 CGUGA-CCUGAUCCCCAGUCGu | :|| |||||:||| || || GGGCTGGGACTGGGGCTCTGCc Hira; Tuple1 mmu-miR-346 397 419 UCUCCG-UCCGUGAGCCCGUCUGu ||:| : | ||| || ||||||| AGGGATGATGCAGTC-GGCAGACg Hira; Tuple1 mmu-miR-34a 237 261 uuguuGGUC--GAUUCUGUGACGGu |::| ||::|:| ||||| tggggCTGGGACTGGGGCTCTGCCt Hira; Tuple1 mmu-miR-34b 240 262 guuagucgauuaauguGACGGAu |||||| ggctgggactggggctCTGCCTt Hira; Tuple1 mmu-miR-351 219 242 gUCCGAGUUUCCCGAGGAGUCCCu |||| ||: | ||::||| tAGGCCCAGCTGTGGACTTGGGGc Hira; Tuple1 mmu-miR-369-5p 498 518 gCUUAUAUUGUGCCAGCUAGa ||:| | :|||:|||| gGAGTTTCTGTTGGTTGATCa Hira; Tuple1 mmu-miR-370 246 275 uUGG-UCCAAGGUGG------GGUCGUCCg ||: :|| ||::|| |||||||| gACTGGGGCTCTGCCTTGCTGCCAGCAGGg Hira; Tuple1 mmu-miR-377 657 679 ugUUUUCAACG-GAAACACACua ||||| | ||||||||| taAAAAGAGACACTTTGTGTGgg Hira; Tuple1 mmu-miR-377 417 438 UGUUU--UCAACGGAAACACACUa ||::| | ||| ||||||| ACGGACCCGAAGCC--TGTGTGAa Hira; Tuple1 mmu-miR-378 376 401 uguGUCCU-GGACCU---CAGUCCuc ||||| || ||: ||:||| gagCAGGAGCCGGGGAGTGTTAGGga Hira; Tuple1 mmu-miR-412 666 688 UGCCGAUCACCUGGUCCACUUCA || :| ||| : :||||::|| ACACTTTGTGTGGGGGGTGGGGT Hira; Tuple1 mmu-miR-422b 200 227 CCG--GAAGACUGAGG----UUCAGGUC ||| ||| | |||| |:| |||| GGCAGCTTGTCCCTCCATGTAGGCCCAG Hira; Tuple1 mmu-miR-423 195 229 gaCUCCC------C--GGAG-----UCUGGCUCGA |:||| | |||| ||:|| |||| aaGGGGGCAGCTTGTCCCTCCATGTAGGCCCAGCT Hira; Tuple1 mmu-miR-424 325 348 aGGUUUUGU--ACUUAACGACGAc ||| :|| || ||||||| gCCACTGCAGGTGCTGTGCTGCTt Hira; Tuple1 mmu-miR-449 303 328 uGG-UCGAU-UGUUA-UGU-GACGGU || || || ||| | :|| |||||| cCCAAGGTAGACACTGGCATCTGCCA Hira; Tuple1 mmu-miR-449b 313 334 gGUCGAUCGU-UAC-GUGACGga || ||:||| || |||||| aCA-CTGGCATCTGCCACTGCag Hira; Tuple1 mmu-miR-455-3p 229 253 uCACAU--AUACGGGCACCUGACgua ||| | |: | |:| |||||| tGTGGACTTGGGGCTG-GGACTGggg Hira; Tuple1 mmu-miR-464 218 241 auagaGUGUC-UUAUUUGAACCau | ||| :|::|||||| gtaggCCCAGCTGTGGACTTGGgg Hira; Tuple1 mmu-miR-469 178 203 cCUGUGGUUCU-AGUUACUUUCUCCGU | | ||| || || | ||:|:|||| aGCCTCCATGACTCCA-AAAGGGGGCA Hira; Tuple1 mmu-miR-483 668 690 UGUUCUGCCCUCCCCUCCUCACu || ::| |:|||| ||:||| ACTTTGTGTGGGGGGTGGGGTGg Hira; Tuple1 mmu-miR-484 266 290 uaGCCCUCCCCUG---ACUCGGACu | | |||| | |||||||| gcCAGCAGGGATCTCTTGAGCCTGt Hira; Tuple1 mmu-miR-484 236 259 uAGCCCUCCCCUGA-CUCG-GACu | ||| |||||| |:|| ||| tTGGGGCTGGGACTGGGGCTCTGc Hira; Tuple1 mmu-miR-485-5p 1 19 cuuaAG-UAGUGCCGGUCGGAGa || :|| :|||: ||||| ----TCTGTCCTGGCTTGCCTCa Hira; Tuple1 mmu-miR-490 268 300 GUCGUAC--------CUCAG---GAGGUCCAAC ||||| | ||| | |||||| ||| CAGCAGGGATCTCTTGAGCCTGTCTCCAGCTTG Hira; Tuple1 mmu-miR-497 323 348 auguuUGGUGUC----ACACGACGAc ||::||| ||||||||| ctgccACTGCAGGTGCTGTGCTGCTt Hira; Tuple1 mmu-miR-500 33 65 GACUUGG---G--AACGG-----GUCC-ACGua | |:||| | ||||| |||| ||| CAGGACCACACTATTGCCACTGGCAGGTTGCcc Hira; Tuple1 mmu-miR-501* 140 165 GUUUAGG--AACGGGCCCAC--GUAa | |: || || ||:||||| ||| CTAGCCCAGTTCCCTGGGTGGACATg Hira; Tuple1 mmu-miR-503 331 348 CGU-CAUGACAAGGGCGACGAu ||| ||:||| :|||||| GCAGGTGCTG----TGCTGCTt Hira; Tuple1 mmu-miR-540 242 261 GGUCCU-AGCUGGAGACUGGA |::||| | |: ||||| ||| CTGGGACTGGGGCTCTG-CCT Hira; Tuple1 mmu-miR-541 262 282 ACACUGGUUGUAGUCUUAGGGAA || :|||:|| :|:|||:||| TGCTGCCAGCA--GGGATCTCTT Hira; Tuple1 mmu-miR-546 252 270 CUGAGGC---ACGGUGGUa |:|||:| |||::||| GGCTCTGCCTTGCTGCCAg Hira; Tuple1 mmu-miR-615 236 259 uuCUCC--CUCUGGGUCCGAGCCu |:|| |:|||: :||||| | ttGGGGCTGGGACTGGGGCTCTGc Hira; Tuple1 mmu-miR-665 270 298 auUCCCUGGAG---UCG----GAGGACca |||||:||| ||| |||| | gcAGGGATCTCTTGAGCCTGTCTCCAGct Hira; Tuple1 mmu-miR-667 669 692 GAACCCGACCCACCG-UCCACagu ||| | |||| ||: :|||| CTTTGTGTGGGGGGTGGGGTGgga Hira; Tuple1 mmu-miR-668 681 706 CCA--UCACCC-GGCUCGGCUCACUGU ||| :||||| | ||| ||| |:|| GGTGGGGTGGGACAGAGGGGAG-GGCA Hira; Tuple1 mmu-miR-670 72 90 aaGUGGUGUAUGUGAGUCCCua | |||| |: |||||| agCCCCACCTG---TCAGGGcg Hira; Tuple1 mmu-miR-671 49 76 GGAG---GUCGGGGAGGUCCCGA-AGGa || | ||| :: |||||||| || CCACTGGCAGGTTGCCCAGGGCTAGCCc Hira; Tuple1 mmu-miR-673 212 234 GAGGU---UCCUGGUCUCGACACuc ||||| ||| || ||||||| CTCCATGTAGGCCC--AGCTGTGga Hira; Tuple1 mmu-miR-674* 223 246 aacaaGAC-UCU-ACCCUCGACac ||| :|| | ||:|||| cccagCTGTGGACTTGGGGCTGgg Hira; Tuple1 mmu-miR-676 72 91 UCGAGUUGUUGG-AGUCCUGCC ||| | || |: |||||:||| AGCCC--CACCTGTCAGGGCGG Hira; Tuple1 mmu-miR-681 262 289 uCGACGGACGGUC-------GCUCCGAC |||||| || :| :||| ||| tGCTGCCAGCAGGGATCTCTTGAGCCTG Hira; Tuple1 mmu-miR-683 250 274 CUCC----UGUGUCGAAUGUCGUCC |:|| :| : ||| ||||||| GGGGCTCTGCCTTGCTGCCAGCAGG Hira; Tuple1 mmu-miR-687 17 40 AGU-AACGACG-UAAGGUCCUauc ||| |||||| | ||||| TCAGCTGCTGCAAGGGCAGGAcca Hira; Tuple1 mmu-miR-689 251 278 CCUGGGGCGG-----C--UCGCCCCUgc ||:|:|:||| | ||| |||| GGGCTCTGCCTTGCTGCCAGCAGGGAtc Hira; Tuple1 mmu-miR-690 55 78 aaaCCAAC---ACUCGGAUCGGaaa ||||| |:| |||||| gcaGGTTGCCCAGGG-CTAGCCcca Hira; Tuple1 mmu-miR-691 252 277 aaaAGACGGA--GA--GAAGUCCUUA ||||||| || | ||||:|| ggcTCTGCCTTGCTGCCAGCAGGGAT Hira; Tuple1 mmu-miR-693-5p 223 244 cuuUUGAAAGCCU--ACACCGAC |:|| | ||| || ||||| cccAGCTGT-GGACTTGGGGCTG Hira; Tuple1 mmu-miR-695 133 151 aaGUCAGUGGAUACGGGUUAga ||| || ||| |||||:| acCAG-CA-CTA-GCCCAGTtc Hira; Tuple1 mmu-miR-702 673 693 CUCGCCCCAUUUCCCACCCgu | |:|||| : :||||||| GTGTGGGGGGTGGGGTGGGac Hira; Tuple1 mmu-miR-705 61 80 ACGGGU-GGGGUGGAGGGUGG |||||| |:| | |||||| TGCCCAGGGCTAGC-CCCACC Hira; Tuple1 mmu-miR-707 170 191 gcauccGUUC-GCCGUACUGAc |||| | ||||||| atatccCAAGCCTCCATGACTc Hira; Tuple1 mmu-miR-710 212 239 GAGUUG-AGAGGGGU-----UCUGAACC ||| |: | |||| :||||||| CTCCATGTAGGCCCAGCTGTGGACTTGG Hira; Tuple1 mmu-miR-713 337 356 CGACAC-ACGGAAGUC-ACGU |||||| || |||||| ||:| GCTGTGCTG-CTTCAGCTGTA Hira; Tuple1 mmu-miR-744 247 265 cGACAAUCGGGAUCGGGGCGu ||| :||:|| |||::|| aCTG-GGGCTCT-GCCTTGCt Hira; Tuple1 mmu-miR-758 536 555 aucACCUG-GUCCAGUGuuu ||||| : |||||| actTGGACATTGGTCACttg Hira; Tuple1 mmu-miR-761 1 27 ACACAG--UCAAA--GUG-GGACGACG | |||| :| || | | ||||||| TCTGTCCTGGCTTGCCTCAGCTGCTGC Hira; Tuple1 mmu-miR-763 201 231 CGGUGACCAAGAA---------GGGUCGACc || :|| || | | |||||||| GCAGCTTGTCCCTCCATGTAGGCCCAGCTGt Hira; Tuple1 mmu-miR-763 62 83 CGGUGACCAAGAAGGGUCGACc ||| || | |||| ||| GCCCAGGGCTAGCCCCACCTGt Hira; Tuple1 mmu-miR-770-3p 210 228 GGUCGAGGUGCAGUCCGGGUgc || |||||:|| ||||||| CC--CTCCATGT-AGGCCCAgc Hira; Tuple1 mmu-miR-801 123 142 CAGCUAAGGCGUGCGUGUCGUUAg ||:| | |:|||| ||||| | GTTG-TCCTGCAC---CAGCACTa Hira; Tuple1 mmu-miR-9 736 753 GUAUGUCGAUCUAUUGGUUUcu |||:|| :|:||| |||||| CATGCA-TTGGAT-ACCAAA-- Hira; Tuple1 mmu-miR-93 125 144 gauGGACGUGCUUGUCGUGAaac ||||||| ||||||| tgtCCTGCAC---CAGCACTagc Hira; Tuple1 mmu-miR-98 325 350 uuGUUAUGU---UGA-AUGAUGGAGU || |:|| :|| |:||:|:||| gcCACTGCAGGTGCTGTGCTGCTTCA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Hira RAID00010256 mmu-miR-30d-3p miRNA MIMAT0017011 Hira mRNA 15260 Prediction 0.1828 Hira RAID00043486 mmu-miR-148b-3p miRNA MIMAT0000580 Hira mRNA 15260 Prediction 0.1828 Hira RAID00184892 mmu-miR-301a-3p miRNA MIMAT0000379 Hira mRNA 15260 Prediction 0.1828 Hira RAID00244708 mmu-miR-8118 miRNA MIMAT0031424 Hira mRNA 15260 Prediction 0.1828 Hira RAID00378407 mmu-miR-30e-3p miRNA MIMAT0000249 Hira mRNA 15260 Prediction 0.1828 Hira RAID00379599 mmu-miR-381-3p miRNA MIMAT0000746 Hira mRNA 15260 Prediction 0.1828 Hira RAID00812053 mmu-miR-301b-3p miRNA MIMAT0004186 Hira mRNA 15260 Prediction 0.1828 Hira RAID01113212 mmu-miR-376c-3p miRNA MIMAT0003183 Hira mRNA 15260 Prediction 0.1828 Hira RAID01133865 mmu-miR-101a-3p miRNA MIMAT0000133 Hira mRNA 15260 Prediction 0.1828 Hira RAID01145509 mmu-miR-7013-5p miRNA MIMAT0027930 Hira mRNA 15260 Prediction 0.1828 Hira RAID01194132 mmu-miR-139-5p miRNA MIMAT0000656 Hira mRNA 15260 Prediction 0.1828 Hira RAID01271395 mmu-miR-152-3p miRNA MIMAT0000162 Hira mRNA 15260 Prediction 0.1828 Hira RAID01305692 mmu-miR-22-3p miRNA MIMAT0000531 Hira mRNA 15260 Prediction 0.1828 Hira RAID01307334 mmu-miR-7116-3p miRNA MIMAT0028130 Hira mRNA 15260 Prediction 0.1828 Hira RAID01335411 mmu-miR-130a-3p miRNA MIMAT0000141 Hira mRNA 15260 Prediction 0.1828 Hira RAID01512530 mmu-miR-1906 miRNA MIMAT0007872 Hira mRNA 15260 Prediction 0.1828 Hira RAID01531373 mmu-miR-148a-3p miRNA MIMAT0000516 Hira mRNA 15260 Prediction 0.1828 Hira RAID01588476 mmu-miR-495-3p miRNA MIMAT0003456 Hira mRNA 15260 Prediction 0.1828 Hira RAID01717478 mmu-miR-215-3p miRNA MIMAT0017169 Hira mRNA 15260 Prediction 0.1828 Hira RAID01730964 mmu-miR-135a-1-3p miRNA MIMAT0004531 Hira mRNA 15260 Prediction 0.1828 Hira RAID01762970 mmu-miR-20b-5p miRNA MIMAT0003187 Hira mRNA 15260 Prediction 0.1828 Hira RAID01872405 mmu-miR-3106-5p miRNA MIMAT0014817 Hira mRNA 15260 Prediction 0.1828 Hira RAID01877072 mmu-miR-377-3p miRNA MIMAT0000741 Hira mRNA 15260 Prediction 0.1828 Hira RAID02007298 mmu-miR-93-5p miRNA MIMAT0000540 Hira mRNA 15260 Prediction 0.1828 Hira RAID02063684 mmu-miR-299a-3p miRNA MIMAT0004577 Hira mRNA 15260 Prediction 0.1828 Hira RAID02075570 mmu-miR-129-5p miRNA MIMAT0000209 Hira mRNA 15260 Prediction 0.1828 Hira RAID02247900 mmu-miR-124-3p miRNA MIMAT0000134 Hira mRNA 15260 Microarray 0.5483 Hira RAID02309435 mmu-miR-136-5p miRNA MIMAT0000148 Hira mRNA 15260 Prediction 0.1828 Hira RAID02565387 mmu-miR-30a-3p miRNA MIMAT0000129 Hira mRNA 15260 Prediction 0.1828 Hira RAID02585428 mmu-miR-7065-5p miRNA MIMAT0028034 Hira mRNA 15260 Prediction 0.1828 Hira RAID02614463 mmu-miR-7578 miRNA MIMAT0029578 Hira mRNA 15260 Prediction 0.1828 Hira RAID02628268 mmu-miR-199a-5p miRNA MIMAT0000229 Hira mRNA 15260 Prediction 0.1828 Hira RAID02670625 mmu-miR-20a-5p miRNA MIMAT0000529 Hira mRNA 15260 Prediction 0.1828 Hira RAID02706727 mmu-miR-485-5p miRNA MIMAT0003128 Hira mRNA 15260 Prediction 0.1828 Hira RAID02726509 mmu-miR-216a-5p miRNA MIMAT0000662 Hira mRNA 15260 Prediction 0.1828 Hira RAID02839285 mmu-miR-543-3p miRNA MIMAT0003168 Hira mRNA 15260 Prediction 0.1828 Hira RAID02960910 mmu-miR-379-5p miRNA MIMAT0000743 Hira mRNA 15260 Prediction 0.1828 Hira RAID02992141 mmu-miR-144-3p miRNA MIMAT0000156 Hira mRNA 15260 Prediction 0.1828 Hira RAID02993047 mmu-miR-421-3p miRNA MIMAT0004869 Hira mRNA 15260 Prediction 0.1828 Hira RAID03080630 mmu-miR-205-3p miRNA MIMAT0017003 Hira mRNA 15260 Prediction 0.1828 Hira RAID03097206 mmu-miR-1192 miRNA MIMAT0005850 Hira mRNA 15260 Prediction 0.1828 Hira RAID03138390 mmu-miR-463-3p miRNA MIMAT0004758 Hira mRNA 15260 Prediction 0.1828 Hira RAID03197365 mmu-miR-692 miRNA MIMAT0003471 Hira mRNA 15260 Prediction 0.1828 Hira RAID03257443 mmu-miR-101b-3p miRNA MIMAT0000616 Hira mRNA 15260 Prediction 0.1828 Hira RAID03259329 mmu-miR-721 miRNA MIMAT0003515 Hira mRNA 15260 Prediction 0.1828 Hira RAID03303625 mmu-miR-7243-5p miRNA MIMAT0029910 Hira mRNA 15260 Prediction 0.1828 Hira RAID03330763 mmu-miR-590-3p miRNA MIMAT0004896 Hira mRNA 15260 Prediction 0.1828 Hira RAID03474532 mmu-miR-130a-5p miRNA MIMAT0016983 Hira mRNA 15260 Prediction 0.1828 Hira RAID03636103 mmu-miR-6951-3p miRNA MIMAT0027803 Hira mRNA 15260 Prediction 0.1828 Hira RAID03698225 mmu-miR-130b-3p miRNA MIMAT0000387 Hira mRNA 15260 Prediction 0.1828 Hira RAID03765903 mmu-miR-7221-5p miRNA MIMAT0028410 Hira mRNA 15260 Prediction 0.1828 Hira RAID03769671 mmu-miR-491-5p miRNA MIMAT0003486 Hira mRNA 15260 Prediction 0.1828 Hira RAID03782469 mmu-miR-214-3p miRNA MIMAT0000661 Hira mRNA 15260 Prediction 0.1828 Hira RAID03827204 mmu-miR-494-3p miRNA MIMAT0003182 Hira mRNA 15260 Prediction 0.1828 Hira RAID03856506 mmu-miR-138-5p miRNA MIMAT0000150 Hira mRNA 15260 Prediction 0.2202 Hira RAID03901165 mmu-miR-384-3p miRNA MIMAT0001076 Hira mRNA 15260 Prediction 0.1828