iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

PPI - IID
Symbol 1	Symbol 2	PMID	DBs	Evidence Type	Adipose Tissue	Adrenal Gland	Amygdala	Bone	Bone Marrow	Brain	Dorsal Root Ganglia	Eye	Heart	Hindgut	Hypothalamus	Kidney	Liver	Lung	Lymph Nodes	Mammary Gland	Midgut	Neurons	Ovary	Pancreas	Pituitary Gland	Placenta	Prostate	Salivary Gland	Skeletal Muscle	Small Intestine	Spleen	Stomach	Testes	Uterus
Pax8	Jade1	20211142	biogrid	exp	G											G					G		G			G				G				G
Jade1	Hoxc12	20211142	biogrid	exp
Hoxa9	Jade1	20211142	biogrid	exp	G			G	G		G			G		G			G	G			G			G	G		G			G		G
Crebbp	Jade1	20211142	biogrid	exp	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G
Pou5f1	Jade1	20362542	biogrid,intact	exp
Tcf3	Jade1	20211142	biogrid	exp	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Jade1	Ing4			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Jade1	Kat5			ortho
Kat7	Jade1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Jade1	Ing5			ortho
Jade1	Sept8			ortho	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G
Ctnnb1	Jade1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube3a	Jade1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Tmpo	Jade1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e1	Jade1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Supt5h	Jade1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Hist1h3b, Hist1h3c, Hist1h3d, Hist1h3e, Hist1h3f, Hist2h3b, Hist2h3c1, Hist2h3c2	Jade1			ortho					G															G	G			G
Jade1	Ccdc94			ortho
Pkd1	Jade1			ortho	G	G	G	G		G	G	G	G	G	G			G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G
Vhl	Jade1			ortho	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G		G		G	G	G	G	G
Ube2h	Jade1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Hmox2	Jade1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Meaf6	Jade1			ortho
Nphp4	Jade1			ortho
Akt1	Jade1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Tk1	Jade1			ortho				G	G					G			G		G	G	G		G				G			G	G	G		G
Jade1	Pfdn1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

PPI - iRefIndex
UniProt A	UniProt B	Method	PMID	Interaction Type	Edge type	Num Participants
Q6ZPI0	E9PVV2	two hybrid	20211142	direct interaction	X	2
Q00288	Q6ZPI0	two hybrid	20211142	direct interaction	X	2
	Q6ZPI0	affinity chromatography technology	20362542	physical association	X	2
F8VPR5	Q6ZPI0	two hybrid	20211142	direct interaction	X	2
P09631	Q6ZPI0	two hybrid	20211142	direct interaction	X	2
Q8K5B8	Q6ZPI0	two hybrid	20211142	direct interaction	X	2
	Q6ZPI0	tandem affinity purification	20362542	association	C	94

PPI - PINA
Gene A	Gene B	Method	Publications	Species A	Species B	Interaction Type	Source Database	Interaction Identidiers	Experimental Role(s) Interactor A	Experimental Role(s) Interactor B
Pou5f1	Phf17	MI:0676(tandem affinity purification)\|MI:0004(affinity chromatography technology)	20362542	taxid:10090(Mus musculus)	taxid:10090(Mus musculus)	MI:0914(association)\|MI:0915(physical association)	(intact)\|(biogrid)	UniProt_170860\|BIOGRID_314415	bait\|bait	prey\|prey
Tcf3	Phf17	MI:0018(two hybrid)	20211142	taxid:10090(Mus musculus)	taxid:10090(Mus musculus)	MI:0407(direct interaction)	(biogrid)	BIOGRID_313604	bait	prey
Hoxa9	Phf17	MI:0018(two hybrid)	20211142	taxid:10090(Mus musculus)	taxid:10090(Mus musculus)	MI:0407(direct interaction)	(biogrid)	BIOGRID_313185	bait	prey
Crebbp	Phf17	MI:0018(two hybrid)	20211142	taxid:10090(Mus musculus)	taxid:10090(Mus musculus)	MI:0407(direct interaction)	(biogrid)	BIOGRID_312961	bait	prey
Pax8	Phf17	MI:0018(two hybrid)	20211142	taxid:10090(Mus musculus)	taxid:10090(Mus musculus)	MI:0407(direct interaction)	(biogrid)	BIOGRID_313475	bait	prey
Phf17	Hoxc12	MI:0018(two hybrid)	20211142	taxid:10090(Mus musculus)	taxid:10090(Mus musculus)	MI:0407(direct interaction)	(biogrid)	BIOGRID_313209	prey	bait