DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Taf3 ATTTA 763-3102 3836-3840;4311-4315;4315-4319;4377-4381;4774-4778 Coordinated posttranscriptional mRNA population dynamics during#Mol Syst Biol 2009; 5: 288.! Taf3 WTATTTATW 763-3102 4313-4321 Coordinated posttranscriptional mRNA population dynamics during#Mol Syst Biol 2009; 5: 288.! Taf3 WWATTTAWW 763-3102 4313-4321 Coordinated posttranscriptional mRNA population dynamics during#Mol Syst Biol 2009; 5: 288.!

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT580598 mmu-miR-323-3p Mus musculus Taf3 209361 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT580596 mmu-miR-3073a-3p Mus musculus Taf3 209361 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT580597 mmu-miR-5098 Mus musculus Taf3 209361 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004524 mmu-miR-30b* 209361 Taf3 cugcauuUGUAGGUGUAGGGUc :|||:| ||||||| cuugguuGCAUUCCCAUCCCAc 2 16 614 635 [mm9:2:9837341-9837362:-] 0.5976 159 7 -19.30 -0.2972 MIMAT0004524 mmu-miR-30b* 209361 Taf3 cugcauuUGUAGGUGUAGGGUc :|:| ::||||||| cccugcuGCGUGUGCAUCCCAu 2 16 656 677 [mm9:2:9837299-9837320:-] 0.6347 151 7 -16.27 -0.3976 MIMAT0004527 mmu-miR-124* 209361 Taf3 uagUUCCAGGCGACAC-UUGUGc | | ||| || || ||||| uggAUGCUCC-CUCUGAAACACa 2 20 131 152 [mm9:2:9837824-9837845:-] 0.4612 121 0 -10.80 -0.1258 MIMAT0000137 mmu-miR-126-5p 209361 Taf3 gcgcaUGGUUUUCAUUAUUac ||:: || |||||| cccucACUGUAAAUAAUAAau 3 17 713 733 [mm9:2:9837243-9837263:-] 0.6816 136 0 -2.87 -0.2042 MIMAT0003473 mmu-miR-133a* 209361 Taf3 uaaaccaAGGUAAAAUGGUCg | | | ||||||| cuccaucUGCCUAUUACCAGu 2 15 221 241 [mm9:2:9837735-9837755:-] 0.5855 146 7 -12.89 -0.5308 MIMAT0000376 mmu-miR-298 209361 Taf3 ccCUUCUUGUCG-GGAGG-AGACGg ||:|: ::|| ||||| ||||| ccGAGGGCUGGCACCUCCAUCUGCc 2 22 207 231 [mm9:2:9837745-9837769:-] 0.5855 136 0 -31.40 -0.3025 MIMAT0000376 mmu-miR-298 209361 Taf3 cccuucuugUCGGGAGGA-GACGg ||:|| ||| |||| aacugcuggAGUCCCCCUGCUGCg 2 15 642 665 [mm9:2:9837311-9837334:-] 0.6161 122 0 -18.03 -0.1695 MIMAT0004579 mmu-miR-302a* 209361 Taf3 cguucauguuggugcAAAUUCa |||||| agauaccuuauauuuUUUAAGa 2 8 529 550 [mm9:2:9837426-9837447:-] 0.7294 120 6 -4.12 -0.2516 MIMAT0004620 mmu-let-7a* 209361 Taf3 ccuuucuGUCAUCU-AACAUAUc || | || ||||||| ugcauccCA-UCGACUUGUAUAa 2 16 668 689 [mm9:2:9837287-9837308:-] 0.6347 144 7 -4.33 -0.8159 MIMAT0004621 mmu-let-7b* 209361 Taf3 cccuuccgucauccAACAUAUc ||||||| ugcaucccaucgacUUGUAUAa 2 9 668 689 [mm9:2:9837287-9837308:-] 0.6347 140 7 -3.65 -0.8159 MIMAT0005439 mmu-let-7c-2* 209361 Taf3 ccuuucuGUCAUCU-AACAUAUc || | || ||||||| ugcauccCA-UCGACUUGUAUAa 2 16 668 689 [mm9:2:9837287-9837308:-] 0.6347 144 7 -4.33 -0.8159 MIMAT0004623 mmu-let-7f* 209361 Taf3 ccCUUCCGUUAUCU-AACAUAUc | | | || || ||||||| guGCAUCCCAUCGACUUGUAUAa 2 21 667 689 [mm9:2:9837287-9837309:-] 0.6347 151 7 -5.47 -0.8123 MIMAT0004624 mmu-miR-15a* 209361 Taf3 acuccgucgugucauACCGGAc |||||| gcagauugucuucauUGGCCUa 2 8 584 605 [mm9:2:9837371-9837392:-] 0.6635 120 6 -12.97 -0.1888 MIMAT0004635 mmu-miR-92a* 209361 Taf3 cauuacgGUGGUU--AGGGGUGGa :|: || |||||||| gagaguaUAUGAAGCUCCCCACCu 2 16 460 483 [mm9:2:9837493-9837516:-] 0.5855 146 7 -22.62 -0.7639 MIMAT0000551 mmu-miR-323-3p 209361 Taf3 ucuccagcuggcaCAUUACAc ||||||| auuagauaagaagGUAAUGUc 2 9 317 337 [mm9:2:9837639-9837659:-] 0.5855 140 7 -8.79 -0.4634 MIMAT0004643 mmu-miR-331-5p 209361 Taf3 ccuaGGGACCCUGGUAUGGAuc :::|| || |||||| aggcUUUUGUGA-GAUACCUua 3 19 518 538 [mm9:2:9837438-9837458:-] 0.7294 128 0 -13.18 -0.3953 MIMAT0004653 mmu-miR-342-5p 209361 Taf3 gaGUUAGUGUCUAUCGUGGGGa ||| || ||:||||||| gaCAAGAAC--AUGGCACCCCu 2 21 110 129 [mm9:2:9837847-9837866:-] 0.4612 157 7 -24.56 -0.1283 MIMAT0004656 mmu-miR-345-3p 209361 Taf3 cagaggucuggggauCAAGUCc |||||| acuaacguguaaaauGUUCAGg 2 8 499 520 [mm9:2:9837456-9837477:-] 0.6574 120 6 -13.67 -0.1154 MIMAT0000605 mmu-miR-350 209361 Taf3 cuUUCACAUACCCG-AAACACUu || ||| ||| ||||||| uaAAAUGUUCAGGCUUUUGUGAg 2 21 508 530 [mm9:2:9837446-9837468:-] 0.6574 159 7 -16.26 -0.7786 MIMAT0000605 mmu-miR-350 209361 Taf3 cuuucacauacccGAAACACUu :||||||| gcacugggaauauUUUUGUGAu 2 10 438 459 [mm9:2:9837517-9837538:-] 0.5855 141 7 -12.30 -0.5492 MIMAT0000672 mmu-miR-199b* 209361 Taf3 cuuguccaucAGA-UUUGUG-ACCc ||| |||||| ||| ggaugcucccUCUGAAACACAUGGg 2 14 132 156 [mm9:2:9837820-9837844:-] 0.4612 120 0 -16.16 -0.1046 MIMAT0004758 mmu-miR-463 209361 Taf3 gauggaaUAUACCACAGAUAGu | | ||| |||||| uuuaagaAAAGGGUUUCUAUCa 2 16 544 565 [mm9:2:9837411-9837432:-] 0.7294 127 6 -13.51 -0.1301 MIMAT0004759 mmu-miR-466a-5p 209361 Taf3 auacaUGUACAUGU-GUGUGUAu |:| ||: ||||||| uauuaAUAAAGACGCCACACAUc 2 18 248 270 [mm9:2:9837706-9837728:-] 0.5855 144 7 -11.39 -0.2689 MIMAT0004187 mmu-miR-744 209361 Taf3 acgacAAUCGGGAUCG-GGGCGu | :|||: ||| ||||| acacaUGGGCCUGAGCUCCCGCa 2 18 148 170 [mm9:2:9837806-9837828:-] 0.5233 125 0 -24.64 -0.1159 MIMAT0003451 mmu-miR-677 209361 Taf3 agUCUUCGAUUA--GUAGUGACuu ||:|| ||| | |||||| uaAGGAG--AAUCCCCUCACUGua 3 21 702 723 [mm9:2:9837253-9837274:-] 0.6816 132 0 -15.16 -0.1601 MIMAT0004825 mmu-miR-423-5p 209361 Taf3 uuucagagcgagagacGGGGAGu |||||| ugauacuaaggagaauCCCCUCa 2 8 696 718 [mm9:2:9837258-9837280:-] 0.6816 120 6 -16.41 -0.2951 MIMAT0004838 mmu-miR-742* 209361 Taf3 acuaaucguugguACACUCau |||||| auguucaggcuuuUGUGAGau 3 9 512 532 [mm9:2:9837444-9837464:-] 0.7294 120 0 -11.97 -0.1186 MIMAT0004875 mmu-miR-466b-5p 209361 Taf3 guacaUGUACAUGU-GUGUGUAg |:| ||: ||||||| uauuaAUAAAGACGCCACACAUc 2 18 248 270 [mm9:2:9837706-9837728:-] 0.5855 144 7 -16.15 -0.2689 MIMAT0004877 mmu-miR-466c-5p 209361 Taf3 auacAUGUACGUGUGUGUGUAg || | |:| ||||||| uuaaUAAAGACGC-CACACAUc 2 19 250 270 [mm9:2:9837706-9837726:-] 0.5855 148 7 -17.37 -0.2490 MIMAT0004879 mmu-miR-466e-5p 209361 Taf3 auacaUGUACAUGU-GUGUGUAg |:| ||: ||||||| uauuaAUAAAGACGCCACACAUc 2 18 248 270 [mm9:2:9837706-9837728:-] 0.5855 144 7 -15.30 -0.2689 MIMAT0005830 mmu-miR-466l 209361 Taf3 uuauacacacguacAUAAAUAu ||||||| cuguaaauaauaaaUAUUUAUg 2 9 719 740 [mm9:2:9837236-9837257:-] 0.7284 140 7 -4.46 -1.2525 MIMAT0005836 mmu-miR-1186 209361 Taf3 guacgGAAAUUAAGGUCGUGAg || |:| ||||||| gaacgCUCCAGUCACAGCACUg 2 18 422 443 [mm9:2:9837533-9837554:-] 0.5855 149 7 -13.95 -0.4661 MIMAT0005837 mmu-miR-1187 209361 Taf3 aaugUGUGUAUGUGUGUGUGUAu |:| | ||:| ||||||| auuaAUAAAGACGC-CACACAUc 2 20 249 270 [mm9:2:9837706-9837727:-] 0.5855 157 7 -15.87 -0.2490 MIMAT0007872 mmu-miR-1906 209361 Taf3 ucgggacggaGUCC-GACGACGu |||| ||||||| ucagcgugggCAGGACUGCUGCc 2 13 3 25 [mm9:2:9837951-9837973:-] 0.4546 151 7 -22.22 -0.1382 MIMAT0007878 mmu-miR-1894-3p 209361 Taf3 gaGGGAAGUGGGAGAGGGA-ACg |||| :: : |||||| || acCCCUCUGGAUGCUCCCUCUGa 2 21 124 146 [mm9:2:9837830-9837852:-] 0.4612 120 0 -20.30 -0.3879 MIMAT0007879 mmu-miR-1893 209361 Taf3 gcUCCGCAGGUCGCGGGCG-CGg :||| | ||| ||||| || auGGGCCU-GAGCUCCCGCAGCa 2 21 152 173 [mm9:2:9837803-9837824:-] 0.5233 122 0 -23.86 -0.2950 MIMAT0009394 mmu-miR-1931 209361 Taf3 cgGUAGCGU-GGUCGGGA-ACGUa ::|| :: ||| |||| |||| caUGUCCUGUCCACCCCUGUGCAg 2 21 564 587 [mm9:2:9837389-9837412:-] 0.7294 123 0 -18.46 -0.8654 MIMAT0009396 mmu-miR-1933-5p 209361 Taf3 uuugauucUGGCUUGUGGU-ACUGa :|| | :|||| |||| cuccaucuGCCUAUUACCAGUGACa 2 17 221 245 [mm9:2:9837731-9837755:-] 0.5855 120 0 -13.03 -0.9436 MIMAT0009404 mmu-miR-1940 209361 Taf3 uuGACGAGGUGGAAG-AGUCAG-GAGGUa || ||| |::| | |: || ||||| ccCU-CUCGAUUUCCUUUCUUCUCUCCAg 2 26 273 300 [mm9:2:9837676-9837703:-] 0.5855 122 0 -18.96 -0.8982 MIMAT0009407 mmu-miR-1942 209361 Taf3 guuggUCUAC-UUCUGUAGACu ||| | | ||||||| aauaaAGACGCCACACAUCUGc 2 17 252 273 [mm9:2:9837703-9837724:-] 0.5855 147 7 -11.22 -0.2703 MIMAT0009433 mmu-miR-1960 209361 Taf3 ucGGGAGAAGAUUGUCGUGACc | ||| | ||||||||| aaCGCUCCAGUCACAGCACUGg 2 21 423 444 [mm9:2:9837532-9837553:-] 0.5855 160 7 -24.92 -0.1371 MIMAT0009439 mmu-miR-1966 209361 Taf3 cugaGAGAGGACUCGGUCGAGGGAa | | ||| | ||||||| auggCACCCCUCUGGAUGCUCCCUc 2 22 119 143 [mm9:2:9837833-9837857:-] 0.4612 149 7 -21.93 -0.2662 MIMAT0011217 mmu-miR-2141 209361 Taf3 uugaaaaGACUGUGGAGGa |||:||||||| ccgagggCUGGCACCUCCa 2 13 207 225 [mm9:2:9837751-9837769:-] 0.5855 156 7 -22.47 -0.1780 MIMAT0015644 mmu-miR-1186b 209361 Taf3 caccacguacggaaaUUAGGGu |||||| cuugauacuaaggagAAUCCCc 2 8 694 715 [mm9:2:9837261-9837282:-] 0.6347 120 6 -9.18 -0.1029 MIMAT0015645 mmu-miR-3473 209361 Taf3 ccgacucGGUAGAGAGGu :| ||||||| uuuccuuUCUUCUCUCCa 2 12 282 299 [mm9:2:9837677-9837694:-] 0.5855 143 7 -15.22 -1.0709 MIMAT0000126 mmu-miR-27b 209361 Taf3 cgUCUUGAAUCGGUGACACUu ||||: :|||||| | ggAGAAUCCCCUCACUGUAAa 2 20 705 725 [mm9:2:9837251-9837271:-] 0.6816 123 0 -13.56 -0.1547 MIMAT0000140 mmu-miR-128 209361 Taf3 uuucucuggccaaGUGACACu ||||||| ugcauucccauccCACUGUGu 2 9 620 640 [mm9:2:9837336-9837356:-] 0.5976 140 7 -12.69 -0.2478 MIMAT0000140 mmu-miR-128 209361 Taf3 uuUCUC-UGGCCAAGUGACAcu :||| |:| ||||||| aaGGAGAAUCCCCUCACUGUaa 3 20 703 724 [mm9:2:9837252-9837273:-] 0.6816 134 0 -16.47 -0.4197 MIMAT0000146 mmu-miR-134 209361 Taf3 ggggagaccaguuGGUCAGUGu |||||||| aggaaagaacgcuCCAGUCACa 2 10 416 437 [mm9:2:9837539-9837560:-] 0.5855 145 7 -20.24 -0.6441 MIMAT0000214 mmu-miR-185 209361 Taf3 agucCUUGACGGA--AAGAGAGGu || :| |:| |||||||| ucucGAUUUCCUUUCUUCUCUCCa 2 19 276 299 [mm9:2:9837677-9837700:-] 0.5855 153 7 -18.69 -1.0709 MIMAT0000229 mmu-miR-199a-5p 209361 Taf3 cuuguccaucAGAC-UUGUG-ACCc |||| ||||| ||| ggaugcucccUCUGAAACACAUGGg 2 14 132 156 [mm9:2:9837820-9837844:-] 0.4612 120 0 -18.53 -0.1046 MIMAT0000235 mmu-miR-202-3p 209361 Taf3 agaaGGGUACGCGAUAUGGAGa |:: ||:| ||||||: caggCUUUUGUGAGAUACCUUa 2 19 517 538 [mm9:2:9837438-9837459:-] 0.7294 138 0 -15.40 -0.3983 MIMAT0000238 mmu-miR-205 209361 Taf3 gucugaggccaccuUACUUCcu |||||| aauaauaaauauuuAUGAAGua 3 9 724 745 [mm9:2:9837231-9837252:-] 0.7284 120 0 -4.58 -0.3340 MIMAT0000526 mmu-miR-15a 209361 Taf3 guGUUUGGUAAUACAC--GACGAu || ||| |:|||| ||||| ccCAUCCCACUGUGUGAACUGCUg 2 21 626 649 [mm9:2:9837327-9837350:-] 0.5976 120 0 -20.10 -0.1998 MIMAT0004651 mmu-miR-340-5p 209361 Taf3 uuaGUCAGAGUAAC-GAA-AUAUu || || ||| | ||| |||| gugCA-UCCCAUCGACUUGUAUAa 2 20 667 689 [mm9:2:9837287-9837309:-] 0.6347 120 0 -6.96 -0.8860 MIMAT0000590 mmu-miR-342-3p 209361 Taf3 ugCCCACGCUAAAGACAC-ACUCu ||| : ||||:|||| |||| cuGGGAAU-AUUUUUGUGAUGAGa 2 22 441 463 [mm9:2:9837513-9837535:-] 0.5855 131 0 -22.58 -0.8185 MIMAT0000590 mmu-miR-342-3p 209361 Taf3 ugcccacgcuaaagacACACUCu |||||| aaaauguucaggcuuuUGUGAGa 2 8 509 531 [mm9:2:9837445-9837467:-] 0.7294 120 6 -11.45 -0.2049 MIMAT0000656 mmu-miR-139-5p 209361 Taf3 gaCCUCU--GUGCACGUGACAUcu ||||| | | | ||||||| aaGGAGAAUCCCCU-CACUGUAaa 3 21 703 725 [mm9:2:9837251-9837273:-] 0.6816 137 0 -17.02 -0.3497 MIMAT0000657 mmu-miR-200c 209361 Taf3 agguaGUAAUGG--GCCG-UCAUAAu :|||||| :| | |||||| cugccUAUUACCAGUGACAAGUAUUa 2 19 227 252 [mm9:2:9837724-9837749:-] 0.5855 125 6 -17.13 -0.9807 MIMAT0000661 mmu-miR-214 209361 Taf3 ugACGGACAGACACGGACGACa |||: | | ||||||| acUGCUGGAGUCCCCCUGCUGc 2 21 643 664 [mm9:2:9837312-9837333:-] 0.6161 148 7 -22.63 -0.1187 MIMAT0000662 mmu-miR-216a 209361 Taf3 aguGUCAACGGUCGACUCUAau ||| :: | |||||| guuCAGGCUUUUG-UGAGAUac 3 20 514 534 [mm9:2:9837442-9837462:-] 0.7294 121 0 -9.78 -0.1072 MIMAT0000741 mmu-miR-377 209361 Taf3 uguuuucaACGGAAACACACUa | || ||||||| cauucccaUCCCACUGUGUGAa 2 15 622 643 [mm9:2:9837333-9837354:-] 0.5976 146 7 -11.58 -0.3590 MIMAT0000746 mmu-miR-381 209361 Taf3 ugucucucgaacggGAACAUAu ||||||| gugcaucccaucgaCUUGUAUa 2 9 667 688 [mm9:2:9837288-9837309:-] 0.6347 140 7 -9.98 -1.0653 MIMAT0000766 mmu-miR-335-5p 209361 Taf3 uguaaaaagcaauaacGAGAACu |||||| aucgacuuguauaaaaCUCUUGa 2 8 676 698 [mm9:2:9837278-9837300:-] 0.6347 120 6 -11.15 -0.1714 MIMAT0001091 mmu-miR-410 209361 Taf3 uguccgguagacacAAUAUAa |||||| uuuugugagauaccUUAUAUu 2 8 522 542 [mm9:2:9837434-9837454:-] 0.7294 120 6 -6.15 -0.1979 MIMAT0001092 mmu-miR-376b 209361 Taf3 uucaccuacaaggAGAUACUa |:||||| uaaauaauaaauaUUUAUGAa 2 9 722 742 [mm9:2:9837234-9837254:-] 0.7284 124 0 -4.66 -0.1679 MIMAT0001537 mmu-miR-429 209361 Taf3 ugccGUAAUGGU--CUG-UCAUAAu :||||||| ||| |||||| ugccUAUUACCAGUGACAAGUAUUa 2 19 228 252 [mm9:2:9837724-9837748:-] 0.5855 137 6 -18.87 -0.9807 MIMAT0001542 mmu-miR-449a 209361 Taf3 uggUCGAUUGU-UAUGU-GACGGu :|||::|| | || ||||| gagGGCUGGCACCUCCAUCUGCCu 2 20 209 232 [mm9:2:9837744-9837767:-] 0.5855 122 0 -17.98 -0.3927 MIMAT0003893 mmu-miR-761 209361 Taf3 acACAGUCAAAGUGGGACGACg || ::| || |||||||| acUGCUGGAGUCCCCCUGCUGc 2 21 643 664 [mm9:2:9837312-9837333:-] 0.6161 160 7 -23.31 -0.1187 MIMAT0003453 mmu-miR-497 209361 Taf3 auGUUUGGUGUCACAC--GACGAc || |||| ||||| ||||| ccCAUCCCACUGUGUGAACUGCUg 2 21 626 649 [mm9:2:9837327-9837350:-] 0.5976 124 0 -26.42 -0.2035 MIMAT0003460 mmu-miR-449c 209361 Taf3 ggUCGAUCGU-UACGU-GACGGa :|||:||| | || ||||| agGGCUGGCACCUCCAUCUGCCu 2 20 210 232 [mm9:2:9837744-9837766:-] 0.5855 126 0 -21.75 -0.3927 MIMAT0003486 mmu-miR-491 209361 Taf3 ggaGUACCUUCCCAAGGGGUGa :|| ||| | ||||||| guaUAU-GAA--GCUCCCCACc 2 20 464 482 [mm9:2:9837494-9837512:-] 0.5855 146 7 -18.05 -0.4084 MIMAT0004847 mmu-miR-882 209361 Taf3 ugaUUACGCGAUUGAGAGAGGa | | | :| :||||||| ucgAUUUCCUUUCUUCUCUCCa 2 20 278 299 [mm9:2:9837677-9837698:-] 0.5855 147 7 -13.96 -1.0709 MIMAT0004854 mmu-miR-876-5p 209361 Taf3 aucACUAAGUGUCUCU-UUAGGu |||| | :| :|| ||||| ucuUGAUAC-UAAGGAGAAUCCc 2 20 693 714 [mm9:2:9837262-9837283:-] 0.6347 121 0 -13.28 -0.7831

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G040380 Taf3 Mus musculus 209361

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Taf3 mcmv-miR-m22-1 beg:391 end:407 pic:3' ACCGGAGCCATGCCTGCCCCTT 5'& |||| |||||||. &5' ---CCTCC------ACGGGGAG 3' Taf3 mmu-miR-466c-5p beg:255 end:271 pic:3' ATACATGTAC-GTGTGTGTGTAG 5'& | |.| |||||||| &5' ---------GACGC-CACACATC 3' Taf3 mmu-miR-1187 beg:256 end:270 pic:3' AATGTGTGTATGTGTGTGTGTAT 5'& ||.| ||||||| &5' ----------ACGC-CACACAT- 3' Taf3 mmu-miR-466a-5p beg:256 end:270 pic:3' ATACATGTACATGT-GTGTGTAT 5'& ||. ||||||| &5' -----------ACGCCACACAT- 3' Taf3 mmu-miR-466b-5p beg:256 end:271 pic:3' GTACATGTACATGT-GTGTGTAG 5'& ||. |||||||| &5' -----------ACGCCACACATC 3' Taf3 mmu-miR-466e-5p beg:256 end:271 pic:3' ATACATGTACATGT-GTGTGTAG 5'& ||. |||||||| &5' -----------ACGCCACACATC 3' Taf3 mmu-miR-2141 beg:211 end:225 pic:3' TTGAAAAGACTGTGGAGGA 5'& |||.||||||| &5' -------CTGGCACCTCC- 3' Taf3 mmu-miR-128 beg:624 end:640 pic:3' TTTCTCTGGCCAAGTGACACT 5'& || ||||||| &5' -------CCATCCCACTGTG- 3' Taf3 mmu-miR-30bstar beg:618 end:635 pic:3' CTGCATTTGTAGGTGTAGGGTC 5'& .|||.| ||||||| &5' -------GCATTCCCATCCCA- 3' Taf3 mmu-miR-330 beg:87 end:104 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& .|.|| |||||||. &5' -------GCGCAT-CCCAGAGG 3' Taf3 mmu-miR-92astar beg:465 end:484 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& ||| .| ||||||||| &5' ---ATGAAGC---TCCCCACCT 3' Taf3 mmu-miR-509-5p beg:635 end:654 pic:3' TACTAACGGTGTAAGACCTCAT 5'& ||. | ||||||| &5' -----TGTGAACTGCTGGAGT- 3' Taf3 mcmv-miR-m01-1 beg:271 end:297 pic:3' GGCAAGCTGCAAT-AAGAGGAGA 5'& || ||||. ||||.|||| &5' CCTCTCGATTTCCTTTCTTCTCT 3' Taf3 mmu-miR-1186 beg:423 end:443 pic:3' GTACGGAAATTAAGGTCGTGAG 5'& ||. |.| ||||||| &5' ---GCTCC-AGTCACAGCACT- 3' Taf3 mmu-miR-1274a beg:139 end:162 pic:3' ACCGCGGACT---TGTCCCTGGACT 5'& .|||| ||| ||.||||| &5' -----TCTGAAACACATGGGCCTGA 3' Taf3 mmu-miR-145 beg:632 end:652 pic:3' TCCCTAAGGAC-C-CTTT-TGACCTG 5'& ||| | ||| .||||| &5' --------CTGTGTGAACTGCTGGA- 3' Taf3 mmu-miR-155 beg:234 end:254 pic:3' TGGGGATAGTGTTAATCGTAATT 5'& || .| ||| ||.||||| &5' ---CCAGTGACA---AGTATTAA 3' Taf3 mmu-miR-1839-5p beg:213 end:233 pic:3' GTTCTGGACAAGATAGATGGAA 5'& |.| || ||||.||| &5' ---GGCACC-TCCATCTGCCT- 3' Taf3 mmu-miR-185 beg:277 end:300 pic:3' AGTCCTTGACGGA---AAGAGAGGT 5'& .|.| ||| ||||||||| &5' -----GATTTCCTTTCTTCTCTCCA 3' Taf3 mmu-miR-1892 beg:281 end:302 pic:3' TAGGAGGGAGGGCAGGGGTTTA 5'& |||| ||.| ||.|||.| &5' -TCCTTTCTTC--TCTCCAGA- 3' Taf3 mmu-miR-1906 beg:641 end:665 pic:3' TCGGGACGGAGTCC----GACGACGT 5'& ||||. || ||||||| &5' ----CTGCTGGAGTCCCCCTGCTGC- 3' Taf3 mmu-miR-1930 beg:185 end:201 pic:3' TGCGACGTCCATGA---TACCTCCA 5'& ||| .|||||| &5' -----------ACTCCAGTGGAGG- 3' Taf3 mmu-miR-1950 beg:569 end:589 pic:3' ACTGGTATAGGAATCTACGTCT 5'& | ||| ||| .|||||| &5' -GTCCACC-CCT---GTGCAGA 3' Taf3 mmu-miR-1959 beg:655 end:676 pic:3' GAGGTGACTCG-ATGTAGGGG 5'& | ||| |. |.|||||| &5' --CTGCTGCGTGTGCATCCC- 3' Taf3 mmu-miR-1960 beg:423 end:445 pic:3' TCGGGAGAAGATTGTCGTGACC 5'& ||.| || |||||||||| &5' -GCTCCAGTC--ACAGCACTGG 3' Taf3 mmu-miR-1967 beg:286 end:307 pic:3' CGTAGAAGAGGGGTCCTAGGAGT 5'& |||||||.|||| |||. &5' ---TCTTCTCTCCAGAA-CCTT- 3' Taf3 mmu-miR-1982star beg:290 end:309 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& |||.|||| |||.|.| &5' -CTCTCCAGAACCTTTC--- 3' Taf3 mmu-miR-199a-3p beg:629 end:650 pic:3' ATTGGTTACACGTCTGATGACA 5'& ||| ||||. |||.||| &5' ---CCACTGTGTGAACTGCTG- 3' Taf3 mmu-miR-199a-5p beg:428 end:446 pic:3' CTTGTCCATCAGACTTGTGACCC 5'& |||| |.||||||| &5' --------AGTCACAGCACTGGG 3' Taf3 mmu-miR-199b beg:629 end:650 pic:3' ATTGGTTACACGTCTGATGACA 5'& ||| ||||. |||.||| &5' ---CCACTGTGTGAACTGCTG- 3' Taf3 mmu-miR-199bstar beg:428 end:446 pic:3' CTTGTCCATCAGATTTGTGACCC 5'& |||| |.||||||| &5' --------AGTCACAGCACTGGG 3' Taf3 mmu-miR-200b beg:230 end:253 pic:3' AGTAGTAATGGTC-CG--TCATAAT 5'& .|||||||| | ||||||| &5' ----TATTACCAGTGACAAGTATTA 3' Taf3 mmu-miR-200c beg:231 end:253 pic:3' AGGTAGTAATGGGC-CG--TCATAAT 5'& .|||||| | | ||||||| &5' -----TATTACCAGTGACAAGTATTA 3' Taf3 mmu-miR-2132 beg:257 end:275 pic:3' GTAGCGCAGTTGTGGGCGG 5'& ||| |||.|.||| &5' ---CGCCAC-ACATCTGCC 3' Taf3 mmu-miR-214 beg:643 end:671 pic:3' TGACGGA--CAGACACGGACGACA 5'& ||||. ||| ||||||| &5' -CTGCTGGAGTCCC--CCTGCTG- 3' Taf3 mmu-miR-23a beg:626 end:643 pic:3' CCTTTAGGGACCGTTACACTA 5'& ||||| .||||| &5' ----ATCCCACT--GTGTGA- 3' Taf3 mmu-miR-23b beg:626 end:643 pic:3' CCATTAGGGACCGTTACACTA 5'& ||||| .||||| &5' ----ATCCCACT--GTGTGA- 3' Taf3 mmu-miR-2861 beg:19 end:38 pic:3' GGCGGGCGGCGGTCCGGGG 5'& |.|||| ||||.||.| &5' CTGCCCTGCGCCGGGTC-- 3' Taf3 mmu-miR-30bstar beg:79 end:101 pic:3' CTGCATTTGTAGGTGTAGGGTC 5'& ||| .|| |.|||||||| &5' GACTT--GCAG-CGCATCCCAG 3' Taf3 mmu-miR-30estar beg:133 end:149 pic:3' CGACATTTGTAGGCTGACTTTC 5'& .| ||| |||||| &5' -------GC-TCCCTCTGAAA- 3' Taf3 mmu-miR-326 beg:82 end:104 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& .|| || |||||||| &5' -TTGCAGCGCAT-CCCAGAGG 3' Taf3 mmu-miR-338-3p beg:637 end:652 pic:3' GTTGTTTTAGTGACT--ACGACCT 5'& ||| ||||||| &5' ------------TGAACTGCTGGA 3' Taf3 mmu-miR-342-3p beg:516 end:532 pic:3' TGCCCACGCTAAAGACACACTCT 5'& | ||. ||||||| &5' --------GGCTTT--TGTGAGA 3' Taf3 mmu-miR-342-5p beg:109 end:130 pic:3' GAGTTAGTGTCTATCGTGGGGA 5'& ||| ||| |.|||||||| &5' --CAAGAACA--TGGCACCCCT 3' Taf3 mmu-miR-3475 beg:282 end:302 pic:3' AAGTTTGGTACAC--GGAGGTCT 5'& || .||||||| &5' ------CCTTTCTTCTCTCCAGA 3' Taf3 mmu-miR-350 beg:440 end:459 pic:3' CTTTCACATACCC-----GAAACACTT 5'& |||| .||||||| &5' ---------TGGGAATATTTTTGTGA- 3' Taf3 mmu-miR-350 beg:510 end:531 pic:3' CTTTCACATACCCG-AAACACTT 5'& ||| ||| |||||||. &5' -----TGTTCAGGCTTTTGTGAG 3' Taf3 mmu-miR-429 beg:230 end:253 pic:3' TGCCGTAATGGT--CTG-TCATAAT 5'& .||||||| ||| ||||||| &5' ----TATTACCAGTGACAAGTATTA 3' Taf3 mmu-miR-452 beg:569 end:590 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& ||| || ||| ||||.|. &5' GTC-CACC--CCTGTGCAGAT- 3' Taf3 mmu-miR-491 beg:464 end:482 pic:3' GGAGTACCTTCCCAAGGGGTGA 5'& .|| |||| ||||||| &5' ---TAT-GAAGC--TCCCCAC- 3' Taf3 mmu-miR-668 beg:226 end:246 pic:3' CCATCACCCGGCTC--GGCTCACTGT 5'& ||| || ||||||| &5' --------GCCTATTACC-AGTGACA 3' Taf3 mmu-miR-696 beg:162 end:180 pic:3' GGGTGTCGTTCGTGTGCG 5'& |||.||||| |. .|| &5' CCCGCAGCATGT---TGC 3' Taf3 mmu-miR-696 beg:370 end:388 pic:3' GGGTGTCGTTCGTGTGCG 5'& |.||||. .||| || &5' -CTACAGTTGGCAA--GC 3' Taf3 mmu-miR-706 beg:538 end:562 pic:3' AAAAAACTCTG-TCCCAAAGAGA 5'& |||||| ||| ||||||||| &5' TTTTTTAAGAAAAGGGTTTCT-- 3' Taf3 mmu-miR-710 beg:72 end:88 pic:3' GAGTTGAGAGGGGT-TCTGAACC 5'& |||.. .|||||| &5' ---------CCCTGTGGACTTG- 3' Taf3 mmu-miR-744 beg:58 end:81 pic:3' ACGACAATC-GGGATCGGGGCGT 5'& |||| ||| .||||.|. &5' --CTGTCTCCCCCGGGCCCTGT- 3' Taf3 mmu-miR-758 beg:423 end:439 pic:3' ATCACCTGGTCCAGTGTTT 5'& | ||| ||||||. &5' ----GCTCCA-GTCACAG- 3' Taf3 mmu-miR-761 beg:643 end:665 pic:3' ACACAGTCAAAGTGGGACGACG 5'& || .| || ||||||||| &5' --TGCTGGAGTCCCCCTGCTGC 3' Taf3 mmu-miR-802 beg:171 end:183 pic:3' TTCCTACTTAGAAACAATGACT 5'& ||||.|||| &5' -------------TGTTGCTGA 3' Taf3 mmu-miR-871 beg:117 end:137 pic:3' GTACTGACCGTGATTAGACTTAT 5'& |||||| ||||.||. &5' ------TGGCACCCCTCTGGATG 3' Taf3 mmu-miR-882 beg:288 end:299 pic:3' TGATTACGCGATTGAGAGAGGA 5'& .||||||| &5' -------------TTCTCTCC- 3' Taf3 mmu-miR-133astar beg:227 end:242 pic:3' TAAACCAAGGTAAAATGGTCG 5'& || |||||||. &5' --------CCTA-TTACCAGT 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Taf3 mmu-miR-1 608 629 AUGUAUGAAGA-AAUGUAAGGU :|||| |: ||:|||||| -UUAUACCUUGGUUGCAUUCCC Taf3 mmu-miR-101a 429 445 GAAGUCAAUAGUGUCAUGACAU ||| |||||| |||| --CCAG---UCACAGCACUGG- Taf3 mmu-miR-101b 425 445 GAAGUCGA---UAGUGUCAUGACAU ||| :|||||| |||| ----CGCUCCAGUCACAGCACUGG- Taf3 mmu-miR-10b 360 380 -UGUGUUUAAGCCAA-GAUGUCCC :|:|| ||||| |||||| GGCGCA---UCGGUAGCUACAGU- Taf3 mmu-miR-122a 609 629 UGUUUGUGGUAACAGUGUGAGGU |:||| ||::||:||| ---UAUACCUUGGUUGCAUUCCC Taf3 mmu-miR-127 29 52 -CGGUUCGAGUCUG-CCUAGGCU- |||::|: :|:| ||: |:|: CGCCGGGUCGGGGCUGGG-CUGGU Taf3 mmu-miR-128a 702 724 UUUUCUCU--GGCCAAGUGACACU ||:|||| || ||||||| UAAGGAGAAUCCCC-UCACUGUA- Taf3 mmu-miR-128b 702 724 CUUUCUCU--GGCCAAGUGACACU ||:|||| || ||||||| UAAGGAGAAUCCCC-UCACUGUA- Taf3 mmu-miR-129-3p 18 45 UACGAAAAAC-----CCCAUUCCCGAA |||| |||| :||||| CUGCUGCCCUGCGCCGGGUCGGGGCUG Taf3 mmu-miR-130a 73 91 UACGGGAAAAUUGUAACGUGAC ||||| :|| ||||| -GGCCCUGUGGAC-UUGCAG-- Taf3 mmu-miR-133a* 214 243 UAAACCA---AGGUAA------AAUGGUCG- ||| ||||| |||||||: --CUGGCACCUCCAUCUGCCUAUUACCAGUG Taf3 mmu-miR-134 391 439 -GGGGAGA---CC-------AGUU--------------GGUCAGUGU :||||| || |||: ||||||||| CUCCCUCCACGGGGAGGUAAUCAGAAGGAAAGAACGCUCCAGUCACAG Taf3 mmu-miR-141 222 245 -GGUAGA-----AAUGGUCUGUCACAAU |||||| ||||||| | UCCAUCUGCCUAUUACCAGUGAC----- Taf3 mmu-miR-155 229 255 GGGGAUAGU-GUUAA---UCGUAAUU- |||||:| ||:| ||:||||| -GCCUAUUACCAGUGACAAGUAUUAAU Taf3 mmu-miR-15a 620 651 GUGUUU-GGUA-----AUACAC--GACGAU- :|| |||| |:|||| |||||: UGCAUUCCCAUCCCACUGUGUGAACUGCUGG Taf3 mmu-miR-15b 637 666 -ACAUUUGGUA--CUAC-----ACGACGAU |||:|||: || |||||| GUGUGAACUGCUGGAGUCCCCCUGCUGCG- Taf3 mmu-miR-17-3p 698 725 -AUG-UUCAC-----GGGAGUGACGUCA ||| ||| |||||||||:| AUACUAAGGAGAAUCCCCUCACUGUAA- Taf3 mmu-miR-185 279 301 CUUGACGGAA---AGAGAGGU- :|:| |||| |||||||| CGAUUUCCUUUCUUCUCUCCAG Taf3 mmu-miR-193 37 54 GACCCUGAAACAUCCGGUCAA- |||:|| :|||::||| -CGGGGCU----GGGCUGGUUC Taf3 mmu-miR-199a 421 447 -CUUGUCCA-UCAGACUUGUGACCC- ||||: |||| |:||||||| AGAACGCUCCAGUCACAGCACUGGGA Taf3 mmu-miR-199a* 631 651 UUGGUUACACGUCUGAUGACAU ||| ||||: |||:||| -CCCACUGUGUGAACUGCUGG- Taf3 mmu-miR-199b 421 447 -CUUGUCCA-UCAGAUUUGUGACCC- ||||: |||| |:||||||| AGAACGCUCCAGUCACAGCACUGGGA Taf3 mmu-miR-200b 223 254 CAGUAG-----UAAUGGUC-CG--UCAUAAU- |||| |||||||| | ||||||| -CCAUCUGCCUAUUACCAGUGACAAGUAUUAA Taf3 mmu-miR-200c 222 254 -GGUAG-----UAAUGGGCCG----UCAUAAU- ||||| |||||| |: ||||||| UCCAUCUGCCUAUUACCA-GUGACAAGUAUUAA Taf3 mmu-miR-201 339 355 UCUUGUUACGGAA-UGACUCAU |||||||| ||||| ----AAAUGCCUUGACUGAU-- Taf3 mmu-miR-212 33 51 -CCGGCACUGACCUCUGACAAU ||:|| |:|||| :||| GGGUCGGGGCUGG--GCUGG-- Taf3 mmu-miR-217 566 589 -UAGGUCAGUCAAGGACUACGUCAU :||| ||| |||| ||||| UGUCCUGUCCACCCCUG-UGCAGA- Taf3 mmu-miR-24 25 60 -GACAAGGA-------CGACUUGACU----CGGU- ||| || ||||::|||: |||| CCUGCGCCGGGUCGGGGCUGGGCUGGUUCUGCCAU Taf3 mmu-miR-24* 348 386 -UGACUAUA-------------GUCGA-GUCAUCCGUG ||||||: :|||| |||| |||| GACUGAUGGAAGGGCGCAUCGGUAGCUACAGUUGGCAA Taf3 mmu-miR-28 148 168 GAGU-UAUCUGACACUCGAGGAA || ||:|:| |||||||| -ACACAUGGGCC-UGAGCUCCC- Taf3 mmu-miR-296 191 210 UGUCCUAACUCCCCCCCGGGA ||| ||||| ||||| CCAGUG--GAGGGCUGGCCCG Taf3 mmu-miR-298 208 233 CCUUCUUG-UCG-GGAGG-AGACGG- :||::| :|| ||||| |||||| -CGAGGGCUGGCACCUCCAUCUGCCU Taf3 mmu-miR-300 195 221 CUUCUCUCGAACGGGAA------CGUAU :|||:||| |||| ||| -UGGAGGGCUGGCCCGAGGGCUGGCAC- Taf3 mmu-miR-301 5 30 -CGAAACUGUUAUGAUAACGUGAC- || |:|| |||: ||| ||| AGCGUGGGCAGGACUGCUGCCCUGC Taf3 mmu-miR-324-3p 20 47 GGUCGU--CGUGGA----CCCCGUCACC- | || ||:|| ||||| ||| GCUGCCCUGCGCCGGGUCGGGGC--UGGG Taf3 mmu-miR-324-5p 16 48 GUGGUUACGGGAU---------CCCCUACGC- ||:: ||||||: |||| || | GACUGCUGCCCUGCGCCGGGUCGGGGCUGGGC Taf3 mmu-miR-326 194 214 UGACCUCCUUCCCGGGUCUCC- ||||||: ||||| |||| -GUGGAGGGCUGGCCC-GAGGG Taf3 mmu-miR-328 193 219 UGC-CUUCCCGUCU---CUCCCGGUC- | |:||||| |: ||||||::| -AGUGGAGGGCUGGCCCGAGGGCUGGC Taf3 mmu-miR-331 197 216 AAGAUCCUAUCCGGGUCCCCG- |||: |||||: |||| ---GAGGGCUGGCCCGAGGGCU Taf3 mmu-miR-337 88 108 UUUC-CGUAGUAUAUCCUCGACUU || ||||| |||||| -CAGCGCAUCCCAGAGGAGCA--- Taf3 mmu-miR-339 183 215 ACUC--GAGG--ACCUCCUG-------UCCCU || |||| ||||||:| |||| AGAAAACUCCAGUGGAGGGCUGGCCCGAGGGC Taf3 mmu-miR-342 441 465 CUGCCCACGCUAAAGACAC-ACUCU- :||| ||||:|||| ||||| -CUGGGAAU-AUUUUUGUGAUGAGAG Taf3 mmu-miR-344 33 55 UGUCAG-UCCGAAACCGAUCUAGU :||| :|||| ||||:| || -GGGUCGGGGCUG-GGCUGGUUCU Taf3 mmu-miR-345 27 58 -CGUGA------CCUGAUCC--CC-AGUCGU ||:| ||:||:|| || || || UGCGCCGGGUCGGGGCUGGGCUGGUUCUGCC Taf3 mmu-miR-346 195 221 -UCU-CCGUCCGUGAGCCCGUCUGU- :|| ||| ||| |||| |:|| UGGAGGGCUGGCCCGAGGGCUGGCAC Taf3 mmu-miR-34a 1 27 UUGUUGGUCGA-----UUCUG-UGACGGU |:|||| |:||| :||||| ---CAUCAGCGUGGGCAGGACUGCUGCCC Taf3 mmu-miR-34b 1 27 GUUAGUCG-AUUAA---UG-UGACGGAU |||||| |:: || :||||| -CAUCAGCGUGGGCAGGACUGCUGCCC- Taf3 mmu-miR-34c 1 27 CGUUAGUCGA--UUGA--UG-UGACGGA |||||| ::| || :||||| --CAUCAGCGUGGGCAGGACUGCUGCCC Taf3 mmu-miR-350 504 532 ACUUUCACAU---AC----CCGA-AACACUU- ||||| || |||| ||||||: ----CGUGUAAAAUGUUCAGGCUUUUGUGAGA Taf3 mmu-miR-361 123 148 CAUGGGGACCUCUA------AGACUAUU |||||| :||| ||||| -CACCCCUCUGGAUGCUCCCUCUGAA-- Taf3 mmu-miR-362 90 113 AAGUGUGGA---UCCAAGGUUCCUAA |:||:| ||| |||||| -GCGCAUCCCAGAGGAG-CAAGGAC- Taf3 mmu-miR-376b* 324 341 UUGGUAUCUUCC-UUAUAGGUG |||||| |||:|||| -----AAGAAGGUAAUGUCCAA Taf3 mmu-miR-377 507 534 UGUUUU-CAA---CGGAAACACACUA- :|||| || ||:|||||| ||| GUAAAAUGUUCAGGCUUUUGUGAGAUA Taf3 mmu-miR-378 11 43 UGUGUCCU-------GGAC----CUCAGUCCUC :||||| |||| |:|||:||: -GGCAGGACUGCUGCCCUGCGCCGGGUCGGGGC Taf3 mmu-miR-423 29 50 GACUCCCCGGAGUCUGGCUCGA- | |||:| :|:|:|:||| -CGCCGGGUCG-GGGCUGGGCUG Taf3 mmu-miR-424 165 186 AGGUUUUGUACUUAACGACGAC- ||: |:|||| |||||| | CCCGCAGCAUG--UUGCUGAAGA Taf3 mmu-miR-429 214 254 UGCCGU--------------AAUGGUCUGU---CAUAAU- :|||| ||||||| | |||||| CUGGCACCUCCAUCUGCCUAUUACCAGUGACAAGUAUUAA Taf3 mmu-miR-434-5p 143 166 CCAAGUUUG-GUACUCAG-CUCGA- | |||| ||||:| | ||||| --CUGAAACACAUGGGCCUGAGCUC Taf3 mmu-miR-449 1 27 -UGGUCGA--UUGUUAUG-UGACGGU |:|||| ::|| || :||||| CAUCAGCGUGGGCAGGACUGCUGCCC Taf3 mmu-miR-449b 2 27 -GGUCGA--UCGUUAC-GUGACGGA :|||| :|||: ::||||| AUCAGCGUGGGCAGGACUGCUGCCC Taf3 mmu-miR-455-3p 192 221 -UCACAUAUA---CGGGCACCUGAC-GUA |||| ||||| ||:||| || CAGUGGAGGGCUGGCCCGAGGGCUGGCAC Taf3 mmu-miR-455-5p 198 219 GCUACAUCAGGUUUCCGUGUAU |: |:| ||:|:||| : AGGGCUGGCCCGAGGGCUGGC- Taf3 mmu-miR-465-3p 25 54 AGAUGAA-UCU--UUCCGG---GACUAG- ||:| :|: ::|||: |||:|: CCUGCGCCGGGUCGGGGCUGGGCUGGUUC Taf3 mmu-miR-469 340 367 CCUGUGGUUCUAGUUACUUUCUC-CGU- |::|| || ::|||:|||:| ||| -AAUGCCUUGACUGAUGGAAGGGCGCAU Taf3 mmu-miR-471 637 669 -ACACUU------UUCGUGAU-AUGAUGCAU- |||||| :||: | |:||:|||: GUGUGAACUGCUGGAGUCCCCCUGCUGCGUGU Taf3 mmu-miR-484 31 50 UAGCCCUCCCCUGACUCGGACU |||| |||:|||:||: -CCGGGUCGGGGCUGGGCUG-- Taf3 mmu-miR-490 3 38 -GUCGUACCU----------CAGGA---GGUCCAAC ||||:|||: | ||| ||:||| UCAGCGUGGGCAGGACUGCUGCCCUGCGCCGGGUC- Taf3 mmu-miR-497 627 651 AUGUUUGGUGUCACAC--GACGAC- || |||| ||||| |||||| -CCAUCCCACUGUGUGAACUGCUGG Taf3 mmu-miR-501* 649 674 GUUUAGGA--ACGG-GCCCACGUAA :|:||| |||: || |||||| GGAGUCCCCCUGCUGCGUGUGCAUC Taf3 mmu-miR-503 644 665 CGUCAUGACA--AGGGCGACGAU- |:||| |||| |||||: ---CUGCUGGAGUCCCCCUGCUGC Taf3 mmu-miR-541 637 658 -ACACUGGUUGUAGUCUUAGGGAA ||||| :| :||:|||| GUGUGAACUGCU--GGAGUCCCC- Taf3 mmu-miR-542-5p 453 481 GCACUGUACU-------ACU---AGGGGCUC || |||| ||| ||||| -UUGUGAUGAGAGUAUAUGAAGCUCCCCA-- Taf3 mmu-miR-543 437 450 UCUUCACGUGGCGCUUACAAA ||||:| |||| -----AGCACUGGGAAUA--- Taf3 mmu-miR-615 195 219 UUCUCCCU-CUGGG--UCCGAGCCU :||||| |:||| :|||| || UGGAGGGCUGGCCCGAGGGCU-GGC Taf3 mmu-miR-652 18 35 -ACGUGUUGGGAUCACCGCGGUAA ||| :|||| |||||: CUGCU--GCCCU----GCGCCGG- Taf3 mmu-miR-665 37 65 AUUCCCUGG--------AGUCGG-AGGACCA |||:|: || ||| ||||| --CGGGGCUGGGCUGGUUCUGCCAUCCUGU- Taf3 mmu-miR-666 161 182 CCGAGAGUGUCG-ACA-CGGGCGA |||| |:|||| ||| ||: AGCUCCCGCAGCAUGUUGCUG--- Taf3 mmu-miR-668 193 221 CCAUCACCCGGCUCGGCUC---ACUGU- ||:| ||||:|: ||||| ||:|| AGUGGAGGGCUGGCCCGAGGGCUGGCAC Taf3 mmu-miR-670 371 407 AAGUGGUGUAU---------GUGAG-------UCCCUA :|:||| ||||| :|||| --AGCUACAGUUGGCAAGCCCACUCCCUCCACGGGGAG Taf3 mmu-miR-671 17 64 GGAGGUCGGGGA-------GGUCCCGA------------- AGGA || | ||||: :|:||||| |||| ACUGCUGCCCUGCGCCGGGUCGGGGCUGGGCUGGUUCUGCCAUCCUG Taf3 mmu-miR-674* 173 206 AACAA-GAC-UCU---------ACC-CUCGACAC |||| ||| ||| ||| |:|||| AUGUUGCUGAAGAAAACUCCAGUGGAGGGCUGG- Taf3 mmu-miR-675-5p 7 35 UGACACCCGG---GAAA----GGCGUGGU- |||||| || |:||:||: --CGUGGGCAGGACUGCUGCCCUGCGCCGG Taf3 mmu-miR-676 10 47 -UCGAGUUGU---UGG----------AGUCCUG-CC- :|| :|| :|| ||:||:| || GGGCAGGACUGCUGCCCUGCGCCGGGUCGGGGCUGGG Taf3 mmu-miR-678 426 448 GGAGGUCAGGAACGUGGCUCUG |||||||| ||||:|:|| GCUCCAGUCACAGCACUGGGAA Taf3 mmu-miR-681 19 46 UCGACGGA---CGGUC--GCUCCGAC- |||||| |||:| ||:||||| UGCUGCCCUGCGCCGGGUCGGGGCUGG Taf3 mmu-miR-682 70 92 -GUCUGAAGUGACACUGA-CGUC- |:|:| | || |||| |||| CCGGGCC-CUGUG-GACUUGCAGC Taf3 mmu-miR-688 7 32 CUUAUUCAUCA-----GCG-GACGCU :|::| || :|| ||||| -CGUGGGCAGGACUGCUGCCCUGCGC Taf3 mmu-miR-689 22 44 CCUGGG--GCGGCUCGCCCCUGC :||| |||||:|: |||:| -UGCCCUGCGCCGGGUCGGGGCU Taf3 mmu-miR-699 29 59 GCUCGGUCCAGCGU------------GACGGA |||:||||| : ||||| --CGCCGGGUCGGGGCUGGGCUGGUUCUGCCA Taf3 mmu-miR-700 152 171 CCACCUGAGC-CAAGGGCGCAC |||:| :| | |||||| -AUGGGCCUGAGCUCCCGCA-- Taf3 mmu-miR-702 29 49 CUCGCCCCAUUUCCC-ACCCGU || |||| :||| ||||| -CGCCGGGUC-GGGGCUGGGCU Taf3 mmu-miR-706 540 563 -AAAAAACUCUG-UCCCAAAGAGA |||||| ||| ||||||||| AUUUUUUAAGAAAAGGGUUUCUA- Taf3 mmu-miR-707 6 46 -GCAUCCGUUC---------------GCCGUA--CUGAC- |||:||||:| ||| |:||| GCGUGGGCAGGACUGCUGCCCUGCGCCGGGUCGGGGCUGG Taf3 mmu-miR-709 50 70 AGGAGGACGGA--GACGGAGG- |:||||| |||:|||| --GUUCUGCCAUCCUGUCUCCC Taf3 mmu-miR-710 63 84 GAGUUGAGAGGGGUUCUGA---ACC- ||||||| :|:| ||| -----GUCUCCCCCGGGCCCUGUGGA Taf3 mmu-miR-711 62 79 GAAUGUAGAGAGGGGCCCAGGG- :|||| ||||||| ||| ----UGUCUC-CCCCGGG-CCCU Taf3 mmu-miR-712* 68 91 GUUGUGGGCCCC---CAC-UGAGCGU- |||||| ||| |||:||| ----CCCCGGGCCCUGUGGACUUGCAG Taf3 mmu-miR-718 15 43 GCUG----UGGG-C-CGGCCC-GCCUUC ||| :||| | |||||| |||:: GGACUGCUGCCCUGCGCCGGGUCGGGGC Taf3 mmu-miR-744 154 172 CGACAAUCGGGAUCG-GGGCGU- :|||: ||| |||||| -----GGGCCUGAGCUCCCGCAG Taf3 mmu-miR-761 635 666 -ACACA-------GUCAAAGUGGGACGACG- ||||| ::| || ||||||||| CUGUGUGAACUGCUGGAGUCCCCCUGCUGCG Taf3 mmu-miR-762 49 79 -CGAGAC---AGGGCC---GGGGUCGGGG- |:|||| |||:| ||||:| ||| GGUUCUGCCAUCCUGUCUCCCCCGGGCCCU Taf3 mmu-miR-764-3p 374 400 -UGUCAAC------GGUGAUACCGGAGGA ||||||| ||||| ||||| UACAGUUGGCAAGCCCACUC---CCUCCA Taf3 mmu-miR-133a* 234 241 UAA-------------ACCA---AGGUAA------AAUGGUCG ||| ||||| |||||||: GGGCUGGCCCGAGGGCUGGCACCUCCAUCUGCCUAUUACCAGUG Taf3 mmu-miR-134 430 437 GGGGAGACCAGUU---------------------GGUCAGUGU |:|| | || :: ||||||||| CUCCACGGGGAGGUAAUCAGAAGGAAAGAACGCUCCAGUCACAG Taf3 mmu-miR-185 292 299 CUU----------GACGGA---------------AAGAGAGGU ||||| ||||||||| AGACGCCACACAUCUGCCCUCUCGAUUUCCUUUCUUCUCUCCAG Taf3 mmu-miR-214 657 664 ----------------------GACGGA--CAGACACGGACGACA ||||: ||| ||||||| CAUUCCCAUCCCACUGUGUGAACUGCUGGAGUCCC--CCUGCUGC Taf3 mmu-miR-216b 280 287 A-------------------GUGUAAACGGACGUCUCUAAAGGG ||||| |||| | |||||||: AAGUAUUAAUAAAGACGCCACACAUCUGCCCUCUC-GAUUUCCUU Taf3 mmu-miR-326 96 103 U---------------GACCUCCU-----UC-CC--GGGUCUCC ||| ||| || | |||||||| CUGUCUCCCCCGGGCCCUGU-GGACUUGCAGCGCAUCCCAGAGGA Taf3 mmu-miR-350 523 530 ------------------AC-UUUCACAUACCC-GAAACACUU || ||| ||| || :|||||||: CGACUUUUAUUACUAACGUGUAAAAUGUUCAGGCUUUUGUGAGA Taf3 mmu-miR-491 475 482 -----------GGAGUAC------------CUUCCCAAGGGGUGA ::| || |||| ||||||| ACUGGGAAUAUUUUUGUGAUGAGAGUAUAUGAAGC--UCCCCACC Taf3 mmu-miR-761 657 664 --------------ACACA-------GUCAAAGUGGGACGACG ||||| ::| || ||||||||| CAUUCCCAUCCCACUGUGUGAACUGCUGGAGUCCCCCUGCUGCG Taf3 mmu-miR-1 607 628 AUGUAU-GAAGAAAUGUAAGGu | :||| ||| ||:|||||| TTTATACCTTGGTTGCATTCCc Taf3 mmu-miR-101a 427 445 GAAGUCAAUAGUGUCAUGACau || ||| |||||| |||| CTCCAG---TCACAGCACTGgg Taf3 mmu-miR-101b 427 445 GAAGUCGAUAGUGUCAUGACau || ||| |||||| |||| CTCCAG---TCACAGCACTGgg Taf3 mmu-miR-10b 361 380 uGUGUUUAAGCCA-AGAUGUCcc |:|| ||||| |||||| gCGCA---TCGGTAGCTACAGtt Taf3 mmu-miR-122a 606 628 uguuUGUGGUAACAGUGUGAGGu |:||| | ||::||:||| ttttATACCTTGGTTGCATTCCc Taf3 mmu-miR-127 23 40 CGGUUCGAGUCUGCCUAGGCu ||| || | |||:|| | GCCCTGC---GCCGGGTCGGg Taf3 mmu-miR-128a 702 724 uUUUCUC-UGGCCAAGUGACAcu ||:||| |:| ||||||| tAAGGAGAATCCCCTCACTGTaa Taf3 mmu-miR-128b 702 724 cUUUCUC-UGGCCAAGUGACAcu ||:||| |:| ||||||| tAAGGAGAATCCCCTCACTGTaa Taf3 mmu-miR-129-3p 21 44 uACGAAAAAC--CCCAUUCCCGAa ||| | | |||| :||||| cTGCCCTGCGCCGGGTCGGGGCTg Taf3 mmu-miR-130a 72 92 uaCGGGAAAAUUGUAACGUgac ||||| | :|| ||||| ggGCCCTGTGGAC-TTGCAgcg Taf3 mmu-miR-134 416 437 ggggagaccaguuGGUCAGUGU ||||||||| aggaaagaacgctCCAGTCACA Taf3 mmu-miR-141 223 245 GGUAGA--AAUGGUCUGUCACaau |||||| ||::| ||||| CCATCTGCCTATTA-CCAGTGaca Taf3 mmu-miR-155 228 253 ggGGAUAGUGUUAA----UCGUAAUU |||||:|| | | ||:||||| tgCCTATTACCAGTGACAAGTATTAA Taf3 mmu-miR-15a 626 649 GUGUUUGGUAAUACAC--GACGAu | || ||| |:|||| ||||| CCCATCCCACTGTGTGAACTGCTg Taf3 mmu-miR-15b 638 666 ACAUUUGGU-ACUAC------ACGACGau |||:|||:: ||: | |||||| TGTGAACTGCTGGAGTCCCCCTGCTGCgt Taf3 mmu-miR-17-3p 699 725 AUG-UUC-----ACGGGAGUGACGUca ||| ||| | |||||||||:| TACTAAGGAGAATCCCCTCACTGTAaa Taf3 mmu-miR-185 279 299 cuUGACGGA---AAGAGAGGU |:| ||| ||||||||| cgATTTCCTTTCTTCTCTCCA Taf3 mmu-miR-193 31 52 GACCCUGAAAC-AUCCGGUCAA | ||| | | |:|||::||| CCGGGTCGGGGCTGGGCTGGTT Taf3 mmu-miR-199a 422 445 CUUGUCCA--UCAGACUUGUGACCC |||| | | |||| |:||||||| GAAC-GCTCCAGTCACAGCACTGGG Taf3 mmu-miR-199a* 630 651 uuGGUUACACGUCUGAUGACau ||| ||||:: |||:||| tcCCACTGTGTGAACTGCTGga Taf3 mmu-miR-199b 422 445 CUUGUCCA--UCAGAUUUGUGACCC |||| | | |||| |:||||||| GAAC-GCTCCAGTCACAGCACTGGG Taf3 mmu-miR-200b 222 252 caGUAG-----UAAUGGUC-C-G-UCAUAAU |||| |||||||| | | ||||||| tcCATCTGCCTATTACCAGTGACAAGTATTA Taf3 mmu-miR-200c 223 252 GGUAG-----UAAUGG--GCCG-UCAUAAU ||||| |||||| :| | ||||||| CCATCTGCCTATTACCAGTGACAAGTATTA Taf3 mmu-miR-201 335 356 ucuugUUACGGAA-UGACUcau |||||||| ||||| gtccaAATGCCTTGACTGAtgg Taf3 mmu-miR-212 34 52 CCGGCACUGACCUCUGACAAu ||:|| |:||| |:||| | GGTCGGGGCTG--GGCTGGTt Taf3 mmu-miR-214 644 664 GACGGACAGACACGGACGACa ||||: | | ||||||| CTGCTGGAGTCCCCCTGCTGc Taf3 mmu-miR-216b 264 287 aGUGUAAACGGACGUCUCUAAAGGg ||||| |||| | ||||||| aCACATCTGCCCTC-TCGATTTCCt Taf3 mmu-miR-217 567 589 uAGGUCAGUCAAGGACUACGUCau ||| ||| ||| :||||| gTCCTGTCCACCCCT-GTGCAGat Taf3 mmu-miR-24 12 33 gacaagGACGACUUGACUCGGu |||||| ||| ||| gcaggaCTGCTGCCCTGCGCCg Taf3 mmu-miR-24 53 77 GAC--AAGGAC-GACUUGACUCGGu ||| ||||| || | |:||| CTGCCATCCTGTCTCCCCCGGGCCc Taf3 mmu-miR-24* 349 385 UGACUA----------UAG---UCGA-GUCAUCCGUg |||||| ||| |||| |||| |||| ACTGATGGAAGGGCGCATCGGTAGCTACAGTTGGCAa Taf3 mmu-miR-28 147 168 gaGU-UAUCUGACACUCGAGGaa || ||:|:| |||||||| aaCACATGGGC-CTGAGCTCCcg Taf3 mmu-miR-300 194 221 CUUCUCUCGAACGG------GAACGUau | :|||:||| ||| || ||| GTGGAGGGCTGGCCCGAGGGCTGGCAcc Taf3 mmu-miR-301 6 28 CGAAACUGUUAUGAUAACGUGAC || | |:||: |||: ||| ||| GCGTGGGCAGGACTGCTGCCCTG Taf3 mmu-miR-324-3p 25 47 GGUCGUCGUGGA-CCCCGUCACc || ||: |: | ||||| | | CCTGCGCCGGGTCGGGGCTGGGc Taf3 mmu-miR-326 78 103 ugACCU--CCUUCCC---GGGUCUCC |||| | || | |||||||| tgTGGACTTGCAGCGCATCCCAGAGG Taf3 mmu-miR-326 193 212 UGACCUCCUUCCCGGGUCUCC | ||||||: ||||| |||| AGTGGAGGGCTGGCCC-GAGG Taf3 mmu-miR-331 194 214 aagaUCCUAUCCGGGUCCCCG |||: |||||: |||| gtggAGGGCTGGCCCGAGGGC Taf3 mmu-miR-337 87 110 uuUC-CGUAGUAUAUCCUCGacuu || ||||| | |||||| gcAGCGCATCCCAGAGGAGCaagg Taf3 mmu-miR-339 185 207 acUCGAGG--ACCUCCUGUCCcu | |||| ||||||:| || aaAACTCCAGTGGAGGGCTGGcc Taf3 mmu-miR-342 439 463 cUGCCCACGCUAAAGACAC-ACUCU || || ||||:|||| ||||| cACTGGGAATATTTTTGTGATGAGA Taf3 mmu-miR-344 32 54 uguCAGUCCGAAACCGAUCUAGu |||:|| | ||||:| || cggGTCGGGGCTGGGCTGGTTCt Taf3 mmu-miR-345 23 41 CGUGACCUGAUCCCCAGUCgu || ||| :| |||||:| GCCCTGCGC--CGGGTCGGgg Taf3 mmu-miR-346 196 219 uCU-CCGUCCGUGAGCCCGUCUGU || ||| ||| | |||| |:|| gGAGGGCTGGCCCGAGGGCTGGCA Taf3 mmu-miR-34a 2 26 UUGUUG-GUCGAUUCU-GUGACGGu | ||:| ::| |:|| ::||||| ATCAGCGTGGGCAGGACTGCTGCCc Taf3 mmu-miR-34b 1 27 guUAGUCG-AU---UAAUG-UGACGGau |||||| |: | || :||||| -cATCAGCGTGGGCAGGACTGCTGCCct Taf3 mmu-miR-350 506 530 AC-UUUCACAUACCCG-AAACACUu || ||| ||| ||| ||||||| TGTAAAATGTTCAGGCTTTTGTGAg Taf3 mmu-miR-361 122 149 CAUGGG--GACCU-CUA---AGACUAUu | |||| ||||| | | ||||| | GCACCCCTCTGGATGCTCCCTCTGAAAc Taf3 mmu-miR-362 89 113 aaGUGU-GGAUC-CAAGGUUCCUaa |:|| || || | |||||| agCGCATCCCAGAGGAGCAAGGAca Taf3 mmu-miR-376b* 319 340 uugguaUCUUCC-UUAUAGGUg |||||| |||:|||| tagataAGAAGGTAATGTCCAa Taf3 mmu-miR-377 508 532 ugUUUUCAA---CGGAAACACACUA ||| ||| ||:|||||| ||| taAAATGTTCAGGCTTTTGTGAGAT Taf3 mmu-miR-378 15 42 ugUGUC--CUGGAC----CUCAGUCCuc || | | |||| |:|||:|| ggACTGCTGCCCTGCGCCGGGTCGGGgc Taf3 mmu-miR-423 26 48 GACUC--CCCGGAGUCUGGCUCGA ||| | |||:| :|:|:|:||| CTGCGCCGGGTC-GGGGCTGGGCT Taf3 mmu-miR-429 226 252 uGCCG--UAAUGGU--CUG-UCAUAAU | || ||||||| ||| ||||||| tCTGCCTATTACCAGTGACAAGTATTA Taf3 mmu-miR-434-3p 32 56 cCUCAGCUC--ACU--ACCAAGuuu |:||||:| ||: |||||| cGGGTCGGGGCTGGGCTGGTTCtgc Taf3 mmu-miR-434-5p 141 164 ccaAGUUUG-GUACUCAG-CUCGA | |||| ||||:| | ||||| ctcTGAAACACATGGGCCTGAGCT Taf3 mmu-miR-449 2 26 UGGUCG-A-UUGUUAU-GUGACGGu |:|||| | ::||: | ::||||| ATCAGCGTGGGCAGGACTGCTGCCc Taf3 mmu-miR-449b 3 26 gGUCG-AUCGUUAC--GUGACGGa |||| |:| | | ::||||| tCAGCGTGGGCAGGACTGCTGCCc Taf3 mmu-miR-455-3p 193 220 UCACAUAU--A-CGGGCACCUGA-CGUa |||| | : | ||||| ||:|| ||| AGTGGAGGGCTGGCCCGAGGGCTGGCAc Taf3 mmu-miR-455-5p 196 223 gCUAC--AUCAGGUUU----CCGUGUAu || | |:| ||:|: ||||| | gGAGGGCTGGCCCGAGGGCTGGCACCTc Taf3 mmu-miR-465-3p 3 31 AGAUGAAUCUUUC-------CGGGACuag || :| |:|: || |||||| TCAGCGTGGGCAGGACTGCTGCCCTGcgc Taf3 mmu-miR-469 339 365 ccUGUGGUUCUAGUUACUUUCUC-CGU |::|| || ::|||:|||:| ||| aaATGCCTTGACTGATGGAAGGGCGCA Taf3 mmu-miR-471 638 667 ACACUU------UUC-GUGAUAUGAUGCAu |||||| :|| | | |:||:||| TGTGAACTGCTGGAGTCCCCCTGCTGCGTg Taf3 mmu-miR-484 30 51 uaGCCCUCCCCUGACUCGGACu |||| |||:|||:||: | gcCGGGTCGGGGCTGGGCTGGt Taf3 mmu-miR-490 13 38 GUCGU-ACCUCAGGA---GGUCCAac ||| | || | ||| ||:||| CAGGACTGCTGCCCTGCGCCGGGTcg Taf3 mmu-miR-491 463 482 ggaguacCUUCCCAAGGGGUGa ||| | ||||||| agtatatGAA--GCTCCCCACc Taf3 mmu-miR-497 626 649 auGUUUGGUGUCACAC--GACGAC || |||| ||||| |||||| ccCATCCCACTGTGTGAACTGCTG Taf3 mmu-miR-501* 651 673 guuuaGGAACGG-GCCCACGUAa || |||: || |||||| agtccCCCTGCTGCGTGTGCATc Taf3 mmu-miR-503 641 663 CGUCAUGAC--AAGGGCGACGAu | | |:||| |||| ||||| GAACTGCTGGAGTCCCCCTGCTg Taf3 mmu-miR-541 638 658 ACACUGGUUGUAGUCUUAGGGaa ||||| | :| ::||:|||| TGTGAACTGC--TGGAGTCCCcc Taf3 mmu-miR-542-5p 463 482 gCACUGUACUACUAGGGGcuc || |:|||| | ||||| aGT-ATATGAAGCTCCCCacc Taf3 mmu-miR-543 432 452 ucuucaCGUGGCGCUUACAAA ||||:| |||| ||| gtcacaGCACTGGGAATATTT Taf3 mmu-miR-652 9 35 ACGUGUUGGGAUCAC----CGCGGuaa || :||: ||: || ||||| TGGGCAGGACTGCTGCCCTGCGCCggg Taf3 mmu-miR-665 40 65 auucCCUG---GAGUCGG-AGGACca ||:| :|| ||| ||||| ggctGGGCTGGTTCTGCCATCCTGtc Taf3 mmu-miR-666 155 170 CCGAGAGUGUCGACACGGGCGa ||| || |||| ||||| GGC-CT--GAGCT---CCCGCa Taf3 mmu-miR-670 387 406 aaGUGGUGUAUGUGAGUCCCUa |||: | | || |:|||| ccCACTCCCTCCA--CGGGGAg Taf3 mmu-miR-671 56 78 GG-AGGUCGGGGAGGUCCCGAAGGA || ||| |:|:| || |||| ||| CCATCCTGTCTCCCCCGGGC--CCT Taf3 mmu-miR-674* 173 206 aACAA-GAC-UCU---------ACC-CUCGACac |||| ||| ||| ||| |:|||| aTGTTGCTGAAGAAAACTCCAGTGGAGGGCTGgc Taf3 mmu-miR-675-5p 5 33 ugaCACCCG----G--GA-AAGGCGUGGu |||||| | || |:||:|| agcGTGGGCAGGACTGCTGCCCTGCGCCg Taf3 mmu-miR-676 1 20 ucgaGUUGUUGGA---GUCCUGcc || ||:| | |||||| ----CATCAGCGTGGGCAGGACtg Taf3 mmu-miR-682 71 90 GUCUGAAGUGACA-CUG-ACGUC |:|:| | |||| ||| ||||| CGGGC--C-CTGTGGACTTGCAG Taf3 mmu-miR-688 12 31 cuuauucaucagcGGACGCu |||||| gcaggactgctgcCCTGCGc Taf3 mmu-miR-689 21 44 ccuGGG--GCGGCUC-GCCCCugc ||| |||||:| ||||| ctgCCCTGCGCCGGGTCGGGGctg Taf3 mmu-miR-699 38 58 gCUCGGUCC-AGCGUGACGGa |:||::|| | |: ||||| gGGGCTGGGCTGGTTCTGCCa Taf3 mmu-miR-700 151 172 ccACCUGAGC-CAAGGGCGcac |||:| :| | |||||| caTGGGCCTGAGCTCCCGCagc Taf3 mmu-miR-702 28 48 CUCGCCCCAUUUCCCACCCGu | || |||| ::|| ||||| GCGCCGGGTCGGGGCTGGGCt Taf3 mmu-miR-706 541 563 AAAAAACUC-UGUCCCAAAGAga |||||| || | ||||||||| TTTTTTAAGAAAAGGGTTTCTat Taf3 mmu-miR-707 1 20 GCAUCCGUUCGCCGUACUGAC | | ||: | |||| ||||| CATCAGCGTG-GGCAGGACTG Taf3 mmu-miR-709 48 68 aggAGGACGG-A-GACGGAGG |:||||| | |||:|||| tggTTCTGCCATCCTGTCTCC Taf3 mmu-miR-710 58 88 gAGUUGAGAGGGG---------UUCUGAACc || ||||||| :|||||| aTCCTGTCTCCCCCGGGCCCTGTGGACTTGc Taf3 mmu-miR-711 53 78 GAAUGUAG---AGA-GGGGCCCAGGg || |||| ||| ||||||| || CTGCCATCCTGTCTCCCCCGGGCCCt Taf3 mmu-miR-712* 64 89 guuGUGGGCCC---CCA-CUGAGCGU | |||||| || ||||:||| tctCCCCCGGGCCCTGTGGACTTGCA Taf3 mmu-miR-718 21 42 GCUGUGGGC-CGGCCC-GCCuuc | :| ||:| |||||| ||| CTGC-CCTGCGCCGGGTCGGggc Taf3 mmu-miR-718 1 19 gcuGUGGGCCGGCCCG-CCUuc ||:| | :|||| ||| ---CATCAGCGTGGGCAGGAct Taf3 mmu-miR-744 149 170 cgacAAUCGGGAUCG-GGGCGU | :|||: ||| |||||| cacaTGGGCCTGAGCTCCCGCA Taf3 mmu-miR-761 636 664 ACACA---GUCAA----AGUGGGACGACG ||||| | | | || ||||||||| TGTGTGAACTGCTGGAGTCCCCCTGCTGC Taf3 mmu-miR-762 58 77 cgaGACAGGGCCGGGGUCGGGG |||||:| ||||:| ||| atcCTGTCTC--CCCCGGGCCC Taf3 mmu-miR-764-3p 375 399 UGUCAAC------GGUGAUACCGGAGGa ||||||| ||||| ||||| ACAGTTGGCAAGCCCACTC---CCTCCa

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Taf3 RAID00001493 mmu-miR-15a-5p miRNA MIMAT0000526 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00034977 mmu-miR-3473a miRNA MIMAT0015645 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00161589 mmu-miR-5098 miRNA MIMAT0020605 Taf3 mRNA 209361 CLIP-seq 0.5483 Taf3 RAID00200498 mmu-miR-495-3p miRNA MIMAT0003456 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00201109 mmu-miR-335-5p miRNA MIMAT0000766 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00205130 mmu-miR-199a-5p miRNA MIMAT0000229 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00246194 mmu-miR-6964-5p miRNA MIMAT0027828 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00249575 mmu-miR-350-3p miRNA MIMAT0000605 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00309866 mmu-miR-344e-3p miRNA MIMAT0014924 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00374010 mmu-miR-677-3p miRNA MIMAT0017246 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00530237 mmu-miR-7646-3p miRNA MIMAT0029795 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00579351 mmu-miR-497a-5p miRNA MIMAT0003453 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00631683 mmu-miR-539-3p miRNA MIMAT0017208 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00632746 mmu-miR-6998-5p miRNA MIMAT0027898 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00645828 mmu-miR-214-3p miRNA MIMAT0000661 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00723438 mmu-miR-449c-5p miRNA MIMAT0003460 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00751424 mmu-miR-653-3p miRNA MIMAT0017284 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00772079 mmu-miR-342-3p miRNA MIMAT0000590 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00855691 mmu-miR-330-3p miRNA MIMAT0000569 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID00943008 mmu-miR-374b-5p miRNA MIMAT0003727 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01105245 mmu-miR-3074-2-3p miRNA MIMAT0014946 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01132047 mmu-miR-139-5p miRNA MIMAT0000656 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01195749 mmu-miR-6931-5p miRNA MIMAT0027762 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01219201 mmu-miR-92a-2-5p miRNA MIMAT0004635 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01233040 mmu-miR-3087-5p miRNA MIMAT0014895 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01243689 mmu-miR-3073a-3p miRNA MIMAT0014855 Taf3 mRNA 209361 CLIP-seq 0.5483 Taf3 RAID01260074 mmu-miR-205-5p miRNA MIMAT0000238 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01303693 mmu-miR-6902-3p miRNA MIMAT0027705 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01329755 mmu-miR-8107 miRNA MIMAT0031412 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01355663 mmu-miR-5616-3p miRNA MIMAT0022360 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01390704 mmu-miR-882 miRNA MIMAT0004847 Taf3 mRNA 209361 Prediction 0.2381 Taf3 RAID01428221 mmu-miR-3618-3p miRNA MIMAT0035717 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01465143 mmu-miR-7091-5p miRNA MIMAT0028088 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01477900 mmu-miR-323-3p miRNA MIMAT0000551 Taf3 mRNA 209361 CLIP-seq 0.5483 Taf3 RAID01524729 mmu-miR-876-5p miRNA MIMAT0004854 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01563700 mmu-miR-3473g miRNA MIMAT0031427 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01571215 mmu-miR-694 miRNA MIMAT0003474 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01883917 mmu-miR-669k-5p miRNA MIMAT0017323 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID01885433 mmu-miR-7238-3p miRNA MIMAT0028445 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID02163437 mmu-miR-466l-3p miRNA MIMAT0005830 Taf3 mRNA 209361 Prediction 0.2202 Taf3 RAID02202184 mmu-miR-551b-5p miRNA MIMAT0017236 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID02254122 mmu-miR-377-3p miRNA MIMAT0000741 Taf3 mRNA 209361 Prediction 0.2202 Taf3 RAID02326162 mmu-miR-6995-5p miRNA MIMAT0027892 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID02416429 mmu-miR-344d-3p miRNA MIMAT0014808 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID02534047 mmu-miR-6899-3p miRNA MIMAT0027699 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID02536128 mmu-miR-128-3p miRNA MIMAT0000140 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID02609008 mmu-miR-202-3p miRNA MIMAT0000235 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID02686473 mmu-miR-6981-3p miRNA MIMAT0027865 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID02737851 mmu-miR-761 miRNA MIMAT0003893 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID02750699 mmu-miR-146a-3p miRNA MIMAT0016989 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID02753234 mmu-miR-376b-3p miRNA MIMAT0001092 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID02843196 mmu-miR-200c-3p miRNA MIMAT0000657 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID02856581 mmu-miR-410-3p miRNA MIMAT0001091 Taf3 mRNA 209361 Prediction 0.2202 Taf3 RAID02863261 mmu-miR-449a-5p miRNA MIMAT0001542 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID02914485 mmu-miR-7676-5p miRNA MIMAT0029860 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID02956792 mmu-miR-1892 miRNA MIMAT0007871 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03158482 mmu-miR-3061-5p miRNA MIMAT0014828 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03190425 mmu-miR-299a-5p miRNA MIMAT0000377 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03207980 mmu-miR-27b-3p miRNA MIMAT0000126 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03271205 mmu-miR-142a-5p miRNA MIMAT0000154 Taf3 mRNA 209361 Prediction 0.2202 Taf3 RAID03277203 mmu-miR-134-5p miRNA MIMAT0000146 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03285117 mmu-miR-290b-5p miRNA MIMAT0029900 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03412658 mmu-miR-491-5p miRNA MIMAT0003486 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03441313 mmu-miR-466g miRNA MIMAT0004883 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03461535 mmu-miR-5619-5p miRNA MIMAT0022365 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03530448 mmu-miR-340-5p miRNA MIMAT0004651 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03577672 mmu-miR-6919-3p miRNA MIMAT0027739 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03600223 mmu-miR-7670-5p miRNA MIMAT0029846 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03638481 mmu-miR-216a-5p miRNA MIMAT0000662 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03757847 mmu-miR-144-3p miRNA MIMAT0000156 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03779015 mmu-miR-381-3p miRNA MIMAT0000746 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03855779 mmu-miR-185-5p miRNA MIMAT0000214 Taf3 mRNA 209361 Prediction 0.2202 Taf3 RAID03912681 mmu-miR-568 miRNA MIMAT0004892 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID03995180 mmu-miR-429-3p miRNA MIMAT0001537 Taf3 mRNA 209361 Prediction 0.1828 Taf3 RAID04045368 mmu-miR-7078-3p miRNA MIMAT0028063 Taf3 mRNA 209361 Prediction 0.1828