PPI - IID Symbol 1 Symbol 2 PMID DBs Evidence Type Adipose Tissue Adrenal Gland Amygdala Bone Bone Marrow Brain Dorsal Root Ganglia Eye Heart Hindgut Hypothalamus Kidney Liver Lung Lymph Nodes Mammary Gland Midgut Neurons Ovary Pancreas Pituitary Gland Placenta Prostate Salivary Gland Skeletal Muscle Small Intestine Spleen Stomach Testes Uterus Ywhae Taf3 16615898 intact exp Hmga2 Taf3 21417337 biogrid exp Myog Taf3 17704303 intact exp Gata4 Taf3 21884934 intact exp Hmga1 Taf3 21417337 biogrid exp Taf3 Lefty1 21884934 intact exp Taf3 Tbpl2 17704303 intact exp, ortho Tbp Taf3 21884934 intact exp, ortho Taf3 Ctcf 21884934 intact exp, ortho Kpnb1 Taf3 ortho Taf3 Taf10 ortho Taf3 Taf6 ortho Taf3 Sap130 ortho Kpna2 Taf3 ortho Taf3 Nap1l4 ortho Taf3 Med26 ortho Taf3 Smad2 ortho Taf3 Npm1 ortho Taf3 Taf5 ortho Hist1h4a, Hist1h4b, Hist1h4c, Hist1h4d, Hist1h4f, Hist1h4h, Hist1h4i, Hist1h4j, Hist1h4k, Hist1h4m, Hist2h4a, Hist4h4 Taf3 ortho Taf3 Mzt1 ortho Taf3 Taf12 ortho Taf3 Kat2a ortho Taf3 Cdc23 ortho Taf3 Taf1 ortho Taf3 Taf7 ortho Taf3 Khdrbs2 ortho Taf3 Taf3 ortho Taf3 Cdc16 ortho Taf13 Taf3 ortho Taf3 Anapc10 ortho Protein Taf4a Taf3 ortho

PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants Q5HZG4 Q3TE85 unspecified method 21417337 direct interaction X 2 Q5HZG4 Q3TE85 pull down 21417337 direct interaction X 2 Q5HZG4 Q3TE85 far western blotting 21417337 direct interaction X 2 Q5HZG4 Q3TE85 affinity chromatography technology 21417337 physical association X 2 Q5HZG4 P52927 pull down 21417337 direct interaction X 2 Q5HZG4 P52927 far western blotting 21417337 direct interaction X 2 Q5HZG4 anti tag coimmunoprecipitation 17884155 association C 4 Q5HZG4 anti bait coimmunoprecipitation 17884155 association C 4 Q5HZG4 P49711 anti tag coimmunoprecipitation 21884934 physical association X 2 Q6SJ95 Q5HZG4 molecular sieving 17704303 physical association X 2 Q6SJ95 Q5HZG4 anti bait coimmunoprecipitation 17704303 physical association X 2 Q6SJ95 Q5HZG4 pull down 17704303 direct interaction X 2 Q5HZG4 pull down 17884155 association C 3 Q5HZG4 anti bait coimmunoprecipitation 21884934 association C 3

PPI - PINA Gene A Gene B Method Publications Species A Species B Interaction Type Source Database Interaction Identidiers Experimental Role(s) Interactor A Experimental Role(s) Interactor B Taf3 Tbpl2 MI:0071(molecular sieving)|MI:0071(molecular sieving)|MI:0071(molecular sieving) 17704303 taxid:10090(Mus musculus) taxid:10090(Mus musculus) MI:0915(physical association)|MI:0915(physical association)|MI:0407(direct interaction) (intact)|(intact)|(intact) UniProt_168825|UniProt_168826|UniProt_168827 neutral component|bait|prey neutral component|prey|bait Taf3 Taf3 MI:0077(nuclear magnetic resonance) 18682226 taxid:10090(Mus musculus) taxid:10090(Mus musculus) MI:0407(direct interaction) MI:0465(dip) DIP_480 - -

PPI - HINT Gene A Gene B PMID Method Quality HMGA1 TAF3 21417337,21417337,21417337 0004,0047,0096 LC HMGA2 TAF3 21417337,21417337 0047,0096 LC YWHAE TAF3 16615898 0027 LC Q3TE85 TAF3 21417337,21417337,21417337 0004,0047,0096 LC TAF3 TBPL2 17704303,17704303,17704303 0006,0071,0096 LC HMGA1 TAF3 21417337,21417337,21417337 0004,0047,0096 LC TBP TAF3 21884934 0006 LC HMGA2 TAF3 21417337,21417337 0047,0096 LC Q3TE85 TAF3 21417337,21417337,21417337 0004,0047,0096 LC TAF3 CTCF 21884934 0006 LC TAF3 TBPL2 17704303,17704303,17704303 0006,0071,0096 LC

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID Q5HZG4 P02309 TAF3 HHF2 0.21 17884155 Q5HZG4 P21675 TAF3 TAF1 0.21 17884155 Q5HZG4 P29037 TAF3 TBP 0.21 21884934 Q5HZG4 P61830 TAF3 HHT2 0.21 17884155 Q5HZG4 Q15542 TAF3 TAF5 0.21 17884155 Q61164 Q5HZG4 CTCF TAF3 0.21 21884934 Q5HZG4 P62259 TAF3 YWHAE 0.081 16615898 Q5HZG4 P52927 TAF3 HMGA2 0.523 21417337 Q6SJ95 Q5HZG4 TBPL2 TAF3 0.569 17704303 Q5HZG4 P17095 TAF3 HMGA1 0.74 21417337 Q5HZG4 P49711 TAF3 CTCF 0.21 21884934 Q5HZG4 P20226 TAF3 TBP 0.376 17884155