DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004519 mmu-let-7g* 71648 Optn cguucCGUCACC-GGACAUGUCa |:| ||| |||||||| gcuccGUACUGGAGCUGUACAGg 2 18 343 365 [mm9:2:4941938-4941960:-] 0.5114 156 7 -19.69 -0.2040 MIMAT0004519 mmu-let-7g* 71648 Optn cgUUCCGUCACCGGACAUGUCa :||| | | :|||||||| agGAGGGA-UAAUCUGUACAGa 2 21 528 548 [mm9:2:4941755-4941775:-] 0.5010 154 7 -19.99 -0.7913 MIMAT0004526 mmu-miR-101a* 71648 Optn cguAGUCGUGACACUAUU-GACu |||| | | ||||| ||| gucUCAGGA--GGGAUAAUCUGu 2 20 523 543 [mm9:2:4941760-4941780:-] 0.5010 120 0 -12.93 -0.3350 MIMAT0004527 mmu-miR-124* 71648 Optn uaguUCCAG-GCGAC--ACUUGUGc :| || : ||| ||||||| auguGGCUCUUUCUGACUGAACACu 2 19 225 249 [mm9:2:4942054-4942078:-] 0.5010 144 7 -12.87 -0.2424 MIMAT0000152 mmu-miR-140* 71648 Optn ggcACCAAGAUGGGACACCAu || | || ||||||| uucUGACUGAACACUGUGGUa 2 19 235 255 [mm9:2:4942048-4942068:-] 0.5010 150 7 -17.63 -0.7806 MIMAT0004536 mmu-miR-151-5p 71648 Optn ugaucugacacucGAGGAGcu |||||| aaaugccagauuuCUCCUCca 3 9 31 51 [mm9:2:4942346-4942366:-] 0.5449 120 0 -11.64 -0.1095 MIMAT0004541 mmu-miR-188-3p 71648 Optn acguuugggacgUACACCCUc :||||||| acaggagggaagGUGUGGGAa 2 10 474 494 [mm9:2:4941809-4941829:-] 0.5010 141 7 -15.71 -0.3538 MIMAT0000375 mmu-miR-297a 71648 Optn uguACGUGUAC-GU-GUGU-AUGUa ||:||| | :| :||| |||| agcUGUACAGGAUAGUACAGUACAu 2 20 355 379 [mm9:2:4941924-4941948:-] 0.5114 121 0 -16.44 -0.7964 MIMAT0004620 mmu-let-7a* 71648 Optn ccUUUCUGUCAU--CU-AACAUAUc |: ||| ||| | ||||||| auAGUGACUGUAAUCAUUUGUAUAu 2 21 549 573 [mm9:2:4941730-4941754:-] 0.5113 150 7 -8.94 -0.9311 MIMAT0004621 mmu-let-7b* 71648 Optn ccCUUCCGUCAUCCAACAUAUc || |:| | ||||||| guGACUGUAAUCAUUUGUAUAu 2 21 552 573 [mm9:2:4941730-4941751:-] 0.5113 148 7 -5.30 -0.9246 MIMAT0005439 mmu-let-7c-2* 71648 Optn ccUUUCUGUCAU--CU-AACAUAUc |: ||| ||| | ||||||| auAGUGACUGUAAUCAUUUGUAUAu 2 21 549 573 [mm9:2:4941730-4941754:-] 0.5113 150 7 -8.94 -0.9311 MIMAT0004623 mmu-let-7f* 71648 Optn ccCUUCCGUUAUCUAACAUAUc || |:||| ||||||| guGACUGUAAUCAUUUGUAUAu 2 21 552 573 [mm9:2:4941730-4941751:-] 0.5113 156 7 -8.92 -0.9180 MIMAT0004629 mmu-miR-22* 71648 Optn auuucgaacggugacUUCUUGa |||||| uaguuuaauuuuuaaAAGAACa 2 8 379 400 [mm9:2:4941903-4941924:-] 0.5114 120 6 -6.18 -0.1580 MIMAT0004630 mmu-miR-26b* 71648 Optn cucgguucauuaccUCUUGUCc ||||||| guuuaauuuuuaaaAGAACAGc 2 9 381 402 [mm9:2:4941901-4941922:-] 0.5114 140 7 -9.88 -1.0588 MIMAT0001094 mmu-miR-412 71648 Optn gccgaucaCCUGGUCCACUu ||| ||||||| ugacaccaGGA-CAGGUGAg 2 13 261 279 [mm9:2:4942024-4942042:-] 0.5010 146 7 -17.94 -0.1074 MIMAT0001637 mmu-miR-452 71648 Optn caGAGUCAAAGGAG--ACGUUUGu :|:||| | | ||||||| agUUUAGUAAACACCUUGCAAACc 2 21 589 612 [mm9:2:4941691-4941714:-] 0.5216 147 7 -15.33 -0.2029 MIMAT0002105 mmu-miR-464 71648 Optn auAGAGUGUCUUAUU--UGA-ACCAu |||: | || |:| ||| |||| gcUCUUUCUGACUGAACACUGUGGUa 2 22 230 255 [mm9:2:4942048-4942073:-] 0.5010 124 0 -14.85 -0.5796 MIMAT0002105 mmu-miR-464 71648 Optn auagagugucuuauuuGAACCAu |||||| uccaguccccaaagcuCUUGGUa 2 8 9 31 [mm9:2:4942366-4942388:-] 0.6042 120 6 -11.64 -0.1638 MIMAT0002889 mmu-miR-532-5p 71648 Optn ugccAGGAUGUGAGUUCC-GUAc |: ||:| |:|||| ||| ucauUUGUAUA-UUAAGGCCAUa 2 19 562 583 [mm9:2:4941720-4941741:-] 0.5216 120 0 -11.30 -1.0752 MIMAT0004789 mmu-miR-450a-3p 71648 Optn uacuuacguuucgUAGGGGUUa :||||||| -guguucucuccaGUCCCCAAa 2 10 1 21 [mm9:2:4942376-4942396:-] 0.6042 141 7 -12.85 -0.4749 MIMAT0004789 mmu-miR-450a-3p 71648 Optn uacuuacguuucgUAGGGGUUa :||||||| -guguucucuccaGUCCCCAAa 2 10 1 21 [mm9:2:4942376-4942396:-] 0.6042 141 7 -12.85 -0.6347 MIMAT0003741 mmu-miR-674* 71648 Optn aaCAAGACUCUACCCUCGACAc | || | | |||||||| agGCUCCG-UACUGGAGCUGUa 2 21 341 361 [mm9:2:4941942-4941962:-] 0.5114 146 7 -13.83 -0.3252 MIMAT0003466 mmu-miR-687 71648 Optn agUAACGACGUAAGGUCCUAUc | || || | ||||||| guACUGGAGCUGUACAGGAUAg 2 21 348 369 [mm9:2:4941934-4941955:-] 0.5114 152 7 -20.98 -0.6422 MIMAT0003472 mmu-miR-693-5p 71648 Optn cuUUUGAAAGCCUACACCGAc :|| || | |||||||| ugGAAGUUCC--AUGUGGCUc 2 20 215 233 [mm9:2:4942070-4942088:-] 0.5010 152 7 -14.15 -0.4228 MIMAT0003510 mmu-miR-717 71648 Optn ucUCUUC-CAUAGAGACAGACUc || || || ||||||| guAGCAGCUUACAGAUGUCUGAg 2 21 422 444 [mm9:2:4941859-4941881:-] 0.5041 143 7 -16.22 -0.3745 MIMAT0004238 mmu-miR-743a 71648 Optn agaUGAGU-CGAACCACAGAAag |||:: ||| |||||| aacACUUGUACUU-CUGUCUUcu 3 20 51 72 [mm9:2:4942325-4942346:-] 0.5449 128 0 -9.19 -0.1048 MIMAT0004840 mmu-miR-743b-3p 71648 Optn agauaaguCGU-ACUACAGAAag |:| | |||||| caacacuuGUACUUCUGUCUUcu 3 15 50 72 [mm9:2:4942325-4942347:-] 0.5449 121 0 -6.00 -0.1059 MIMAT0004865 mmu-miR-297c 71648 Optn uguACAUGUAC-GU-GUGU-AUGUa |||||| | :| :||| |||| agcUGUACAGGAUAGUACAGUACAu 2 20 355 379 [mm9:2:4941924-4941948:-] 0.5114 125 0 -16.95 -0.7964 MIMAT0004938 mmu-miR-875-3p 71648 Optn guAUCGGAGUCAU-AAAAG-UCc |:||: ||||: ||||| || aaUGGCUGCAGUGUUUUUCUAGg 2 20 149 171 [mm9:2:4942132-4942154:-] 0.5108 130 0 -22.52 -0.5121 MIMAT0005293 mmu-miR-467e 71648 Optn ugUAUAUGUACGAGUGUGA-AUa |||| : || |||||| || aaAUAUUUUUG-ACACACUGUAc 2 21 92 113 [mm9:2:4942284-4942305:-] 0.4665 122 0 -10.63 -0.3519 MIMAT0005834 mmu-miR-466i 71648 Optn auCACACAU---AC-ACACACACAUa ||| | | || |||||||||| uaGUGGGCAUCUUGUUGUGUGUGUAa 2 21 184 209 [mm9:2:4942094-4942119:-] 0.5010 158 7 -20.72 -1.0094 MIMAT0005839 mmu-miR-669f 71648 Optn uaUGCACACACACAUACAUAUAc || ||| | ||||||| ugAC-UGUAAUCAUUUGUAUAUu 2 22 553 574 [mm9:2:4941729-4941750:-] 0.5113 143 7 -7.30 -0.9241 MIMAT0005848 mmu-miR-466j 71648 Optn aauGUGUGUACGUGUAC-GUGUGu |||| || : : || ||||| uauCACAAAUAUUUUUGACACACu 2 21 86 109 [mm9:2:4942288-4942311:-] 0.4665 124 0 -12.10 -0.4508 MIMAT0005855 mmu-miR-467h 71648 Optn ugUAUAUGUACGUGUGUGA-AUa |||| : || ||||||| || aaAUAUUUUUG-ACACACUGUAc 2 21 92 113 [mm9:2:4942284-4942305:-] 0.4665 130 0 -12.01 -0.3519 MIMAT0007871 mmu-miR-1892 71648 Optn uagGAGGGAGGGCAGGGGUUUa :||:|||| ||||||||| gugUUCUCUCCAGUCCCCAAAg 2 20 1 22 [mm9:2:4942375-4942396:-] 0.6042 179 7 -30.96 -0.2144 MIMAT0007871 mmu-miR-1892 71648 Optn uagGAGGGAGGGCAGGGGUUUa :||:|||| ||||||||| gugUUCUCUCCAGUCCCCAAAg 2 20 1 22 [mm9:2:4942375-4942396:-] 0.6042 179 7 -30.96 -0.3261 MIMAT0009394 mmu-miR-1931 71648 Optn cgguagcguggucgGGAACGUa ||||||| caguuuaguaaacaCCUUGCAa 2 9 588 609 [mm9:2:4941694-4941715:-] 0.5216 140 7 -13.43 -1.1085 MIMAT0009404 mmu-miR-1940 71648 Optn uugacgaGGUGGAAGAGUCAGGAGGUa ||| || || ||||||| guaaaugCCAGAUU-UC--UCCUCCAa 2 21 29 52 [mm9:2:4942345-4942368:-] 0.5449 147 7 -18.30 -0.8804 MIMAT0009433 mmu-miR-1960 71648 Optn ucGGGAGAAGAUUGUC-GUGACc :|: || |:| || ||||| guUCUGCUCAUGAGAGUCACUGu 2 21 112 134 [mm9:2:4942169-4942191:-] 0.5178 120 0 -15.78 -0.2206 MIMAT0009455 mmu-miR-1983 71648 Optn ucuuuuguacgagGUCCACUc ||||||| guugacaccaggaCAGGUGAg 2 9 259 279 [mm9:2:4942024-4942044:-] 0.5010 140 7 -17.50 -0.1149 MIMAT0012772 mmu-miR-599 71648 Optn caaacuauuuGACUGUGUu :||||||| acaaauauuuUUGACACAc 2 10 90 108 [mm9:2:4942289-4942307:-] 0.4665 141 7 -10.45 -0.8022 MIMAT0012773 mmu-miR-767 71648 Optn acgAGUCUGUUGGUACC-ACGu |||| ||: |||| ||| cagUCAGCCAG-AAUGGCUGCa 2 19 138 158 [mm9:2:4942145-4942165:-] 0.5108 120 0 -19.09 -0.3807 MIMAT0015645 mmu-miR-3473 71648 Optn ccgacucgguAGAGAGGu ||||||| ------guguUCUCUCCa 2 9 1 12 [mm9:2:4942385-4942396:-] 0.6635 140 7 -13.95 -0.4599 MIMAT0015645 mmu-miR-3473 71648 Optn ccgacucgguAGAGAGGu ||||||| ------guguUCUCUCCa 2 9 1 12 [mm9:2:4942385-4942396:-] 0.6635 140 7 -13.95 -0.7705 MIMAT0000126 mmu-miR-27b 71648 Optn cgucuugaaUCGGUGACACUu ||:|||||||| gcucaugagAGUCACUGUGAg 2 13 117 137 [mm9:2:4942166-4942186:-] 0.5178 156 7 -22.01 -0.1215 MIMAT0000133 mmu-miR-101a 71648 Optn aagucAAUAGUGUCA-UGACAu | || | ||| ||||| ucugcUCAUGAGAGUCACUGUg 2 17 114 135 [mm9:2:4942168-4942189:-] 0.5178 120 0 -10.87 -0.2523 MIMAT0000140 mmu-miR-128 71648 Optn uuucuCUGGCCAAGUGACACu |||: | ||||||| uuucuGACU-GAACACUGUGg 2 17 234 253 [mm9:2:4942050-4942069:-] 0.5010 146 7 -19.26 -0.5398 MIMAT0000140 mmu-miR-128 71648 Optn uuucucuggccaAGUGACACu |||||||| ugcucaugagagUCACUGUGa 2 10 116 136 [mm9:2:4942167-4942187:-] 0.5178 145 7 -18.14 -0.8020 MIMAT0000153 mmu-miR-141 71648 Optn gguagaaaUGGUCUGUCACAAu :|||| ||||||| ccacauaaGCCAGCCAGUGUUu 2 15 86 107 [mm9:2:4942196-4942217:-] 0.5166 158 7 -20.31 -0.3574 MIMAT0000153 mmu-miR-141 71648 Optn gguagaaauggucUGUCACAAu :||||||| agccagaauggcuGCAGUGUUu 2 10 143 164 [mm9:2:4942139-4942160:-] 0.5108 141 7 -15.94 -0.3497 MIMAT0000160 mmu-miR-150 71648 Optn gugaccauGUUCC--CAACCCUCu ||| | ||||||| ccagucccCAAAGCUCUUGGGAGa 2 15 10 33 [mm9:2:4942270-4942274,4942369-4942387:-] 0.5615 141 7 -14.84 -0.2930 MIMAT0000214 mmu-miR-185 71648 Optn aguccuugacggaAAGAGAGGu |||||||| ----------gugUUCUCUCCa 2 10 1 12 [mm9:2:4942385-4942396:-] 0.6635 145 7 -16.36 -0.4599 MIMAT0000214 mmu-miR-185 71648 Optn aguccuugacggaAAGAGAGGu |||||||| ----------gugUUCUCUCCa 2 10 1 12 [mm9:2:4942385-4942396:-] 0.6635 145 7 -16.36 -0.7705 MIMAT0000215 mmu-miR-186 71648 Optn ucggguuuuccucuuAAGAAAc |||||| acuuguacuucugucUUCUUUa 2 8 54 75 [mm9:2:4942322-4942343:-] 0.5010 120 6 -4.35 -0.1767 MIMAT0000237 mmu-miR-204 71648 Optn uccgUAUCCU--ACUGUUUC-CCUu | |||| | |||||| ||| accgACAGGAAGUCACAAAGAGGAa 2 19 45 69 [mm9:2:4942234-4942258:-] 0.5130 125 0 -15.98 -0.7085 MIMAT0000373 mmu-miR-295 71648 Optn ucugaGUUUUCAUCAUCGU-GAAa ||:| | ||||||| ||| cuuugCAGAUGAAGUAGCAGCUUa 2 19 409 432 [mm9:2:4941871-4941894:-] 0.5114 134 0 -14.68 -0.8500 MIMAT0000380 mmu-miR-302a 71648 Optn aguGGUUUU--GUACC--UUCGU-GAAu |||||: | ||| :|||| ||| uccCCAAAGCUCUUGGGAGAGCAUCUUc 2 21 14 41 [mm9:2:4942262-4942274,4942369-4942383:-] 0.5127 122 0 -18.98 -0.4275 MIMAT0000519 mmu-miR-200a 71648 Optn uguagcaaUGGUCUGUCACAAu :|||| ||||||| ccacauaaGCCAGCCAGUGUUu 2 15 86 107 [mm9:2:4942196-4942217:-] 0.5166 158 7 -20.63 -0.3574 MIMAT0000519 mmu-miR-200a 71648 Optn uguagcaauggucUGUCACAAu :||||||| agccagaauggcuGCAGUGUUu 2 10 143 164 [mm9:2:4942139-4942160:-] 0.5108 141 7 -15.94 -0.3497 MIMAT0000537 mmu-miR-27a 71648 Optn cgccuugaaUCGGUGACACUu ||:|||||||| gcucaugagAGUCACUGUGAg 2 13 117 137 [mm9:2:4942166-4942186:-] 0.5178 156 7 -20.08 -0.1215 MIMAT0000616 mmu-miR-101b 71648 Optn aaGUCGA-UAGUGUCA-UGACAu | ||| || | ||| ||||| uuCUGCUCAUGAGAGUCACUGUg 2 20 113 135 [mm9:2:4942168-4942190:-] 0.5178 126 0 -16.83 -0.2568 MIMAT0000668 mmu-miR-211 71648 Optn uccgUUUCCU--ACUGUUUC-CCUu | |||| | |||||| ||| accgACAGGAAGUCACAAAGAGGAa 2 19 45 69 [mm9:2:4942234-4942258:-] 0.5130 125 0 -17.24 -0.7048 MIMAT0000677 mmu-miR-7a 71648 Optn uguuGUUUUAGUGAUCA-GAAGGu ||::||:: ||| ||||| agcuCAGGAUUG-GAGUCCUUCCc 2 20 291 313 [mm9:2:4941990-4942012:-] 0.5035 121 0 -14.21 -0.1156 MIMAT0000677 mmu-miR-7a 71648 Optn ugUUGUUUUAGUGA--UCAGAAGGu |||| :||| ||||||: ccAACACUUGUACUUCUGUCUUCUu 2 22 49 73 [mm9:2:4942324-4942348:-] 0.5449 132 0 -18.37 -0.1277 MIMAT0000678 mmu-miR-7b 71648 Optn uguuGUUUUAGUGUUCA-GAAGGu ||::||:: :||| ||||| agcuCAGGAUUG-GAGUCCUUCCc 2 20 291 313 [mm9:2:4941990-4942012:-] 0.5035 125 0 -13.37 -0.1156 MIMAT0000678 mmu-miR-7b 71648 Optn uguuguuuuaguguuCAGAAGGu ||||||: aacacuuguacuucuGUCUUCUu 2 9 51 73 [mm9:2:4942324-4942346:-] 0.5449 124 0 -12.63 -0.1277 MIMAT0000766 mmu-miR-335-5p 71648 Optn uguaaaaagcaauaaCGAGAACu ||||||| ucuccaguccccaaaGCUCUUGg 2 9 7 29 [mm9:2:4942274-4942274,4942369-4942390:-] 0.5615 140 7 -12.94 -0.1089 MIMAT0000766 mmu-miR-335-5p 71648 Optn ugUAAAAAGCAAUAA--CG-AGAACu || || | ||| | || ||||| aaAUCUUCCCUUAGUGGGCAUCUUGu 2 22 173 198 [mm9:2:4942105-4942130:-] 0.5018 124 0 -10.24 -0.2662 MIMAT0000766 mmu-miR-335-5p 71648 Optn uguaaaaagcaauaaCGAGAACu ||||||| ucuccaguccccaaaGCUCUUGg 2 9 7 29 [mm9:2:4942368-4942390:-] 0.6042 140 7 -12.94 -0.1531 MIMAT0003130 mmu-miR-486 71648 Optn gagcccCGUCGAGUCAUGUCCu | |||| ||||||| cguacuGGAGCU--GUACAGGa 2 17 347 366 [mm9:2:4941937-4941956:-] 0.5114 149 7 -19.44 -0.7376 MIMAT0003169 mmu-miR-539 71648 Optn uguguggUUCCUAU-UAAAGAGg || | | ||||||| cuugguaAAUGCCAGAUUUCUCc 2 16 25 47 [mm9:2:4942350-4942372:-] 0.5449 142 7 -14.78 -0.4302 MIMAT0003172 mmu-miR-542-3p 71648 Optn aaAGUCAAUAGUUA-GACAGUGu || || || | :|||||| cuUCUGUCUUCUUUAUUGUCACa 2 21 61 83 [mm9:2:4942314-4942336:-] 0.5010 135 6 -15.19 -0.3115 MIMAT0003889 mmu-miR-758 71648 Optn aucACCUG---GUC---CAGUGUUu ||||| ||| ||||||| uucUGGACCGACAGGAAGUCACAAa 2 17 39 63 [mm9:2:4942240-4942264:-] 0.5130 146 7 -19.89 -0.8479 MIMAT0003889 mmu-miR-758 71648 Optn aucaccuggucCAGUGUuu |||||| ucuucuuuauuGUCACAua 3 9 67 85 [mm9:2:4942312-4942330:-] 0.5010 120 0 -6.87 -0.2762 MIMAT0003889 mmu-miR-758 71648 Optn aucaccugguccAGUGUUu |||||| uugucacauauaUCACAAa 2 8 76 94 [mm9:2:4942303-4942321:-] 0.4570 120 6 -7.09 -0.2002 MIMAT0003513 mmu-miR-505 71648 Optn ucUUUUG--GUCGUUCACAACUGc || || ::|:| ||||||| ugAACACUGUGGUAUCUGUUGACa 2 21 242 265 [mm9:2:4942038-4942061:-] 0.5010 151 7 -13.27 -0.3891 MIMAT0004847 mmu-miR-882 71648 Optn ugauuacgcgauUGAGAGAGGa ::||||||| ----------guGUUCUCUCCa 2 11 1 12 [mm9:2:4942385-4942396:-] 0.6635 142 7 -12.83 -0.4599 MIMAT0004847 mmu-miR-882 71648 Optn ugauuacgcgauUGAGAGAGGa ::||||||| ----------guGUUCUCUCCa 2 11 1 12 [mm9:2:4942385-4942396:-] 0.6635 142 7 -12.83 -0.7705 MIMAT0004869 mmu-miR-421 71648 Optn cgcggGUUA-AUUACAGACAACUa || | |::| |||||||| cugaaCACUGUGGUAUCUGUUGAc 2 19 241 264 [mm9:2:4942039-4942062:-] 0.5010 157 7 -15.01 -0.3494

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G039250 Optn Mus musculus 71648

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Optn mmu-miR-27b beg:123 end:137 pic:3' CGTCTTGAATCGGTGACACTT 5'& ||.||||||||. &5' ---------AGTCACTGTGAG 3' Optn mmu-miR-128 beg:120 end:137 pic:3' TTTCTCTGGCCAAGTGACACT 5'& |||| ||||||||| &5' ---GAGAG----TCACTGTGA 3' Optn mmu-miR-128 beg:236 end:254 pic:3' TTTCTCTGGCCAAGTGACACT 5'& |||.| |||||||. &5' -----GACTGAA-CACTGTGG 3' Optn mmu-miR-687 beg:353 end:370 pic:3' AGTAACGACGTAAGGTCCTATC 5'& ||||.| |||||||| &5' -----GCTGTA---CAGGATAG 3' Optn mmu-miR-412 beg:266 end:280 pic:3' GCCGATCACCTGGTCCACTT 5'& ||| |||||||. &5' --------GGA-CAGGTGAG 3' Optn mmu-miR-1892 beg:3 end:22 pic:3' TAGGAGGGAGGGCAGGGGTTTA 5'& .||.|||| ||||||||| &5' ---TTCTCTCCAGTCCCCAAA- 3' Optn mmu-miR-1931 beg:592 end:609 pic:3' CGGTAGCGTGGTCGGGAACGTA 5'& |.| ||||||| &5' ------GTAAACA-CCTTGCA- 3' Optn mmu-miR-335-5p beg:19 end:29 pic:3' TGTAAAAAGCAATAACGAGAACT 5'& |||||||. &5' ---------------GCTCTTGG 3' Optn mmu-miR-486 beg:350 end:367 pic:3' GAGCCCCGTCGAGTCATGTCCT 5'& || |||| |||||||| &5' -----GG-AGCT--GTACAGGA 3' Optn mcmv-miR-m107-1-5p beg:543 end:559 pic:3' CCACTGAGCTCTGCTCACTGGC 5'& ||| ||||||.| &5' ---------AGAATAGTGACTG 3' Optn mcmv-miR-M23-2 beg:302 end:317 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& | || |||.|| &5' ------GTCCTT--CCCTCA- 3' Optn mmu-let-7bstar beg:185 end:205 pic:3' CCCTTCCGTCATCCAACATATC 5'& .|||| |||||.|. &5' ----GGGCATCTTGTTGTGTG- 3' Optn mmu-let-7gstar beg:345 end:365 pic:3' CGTTCCGTCACCG-GACATGTCA 5'& |.| ||| |||||||| &5' -----GTACTGGAGCTGTACAG- 3' Optn mmu-let-7gstar beg:525 end:548 pic:3' CGTTCCGTCACC----GGACATGTCA 5'& ||| || || .|||||||| &5' ---AGG-AG-GGATAATCTGTACAG- 3' Optn mmu-miR-1190 beg:299 end:321 pic:3' CTGTCTCCCCTT-GGAGTCGACT 5'& .||| ||||||||| &5' ---GGAGTCCTTCCCTCAGCTG- 3' Optn mmu-miR-1196 beg:461 end:483 pic:3' TCCGTC-TCC-GTCCATCTAAA 5'& .||.|| ||| |||| .|. &5' GGGTAGCAGGACAGGAGGG--- 3' Optn mmu-miR-1198 beg:88 end:113 pic:3' GGTTCGGTCGGTC-CTTGTGTAT 5'& .||||||||||| | .||. &5' -TAAGCCAGCCAGTGTTTTTATG 3' Optn mmu-miR-124star beg:233 end:249 pic:3' TAGTTCCAGGCGACACTTGTGC 5'& ||.| ||||||| &5' -------TCTGAC-TGAACAC- 3' Optn mmu-miR-1-2-as beg:478 end:500 pic:3' ACCTTACAT-TTCTTCATACAT 5'& |||| ||. ..|||| .|| &5' -GGAAGGTGTGGGAAGAGTG-- 3' Optn mmu-miR-135a beg:560 end:584 pic:3' AGTGTATCCTTATTTTTCGGTAT 5'& |||. ||.|||||| &5' TCATTTGTATATT-AAGGCCATA 3' Optn mmu-miR-139-5p beg:236 end:254 pic:3' GACCTCTGTGCACGTGACATCT 5'& ||| .| ||||||.| &5' -----GAC-TGAACACTGTGG- 3' Optn mmu-miR-139-5p beg:201 end:219 pic:3' GACCTCTGTGCACGT---GACATCT 5'& |||.| ||||.|| &5' ----------GTGTAATTCTGTGGA 3' Optn mmu-miR-141 beg:142 end:164 pic:3' GGTAGAAATGGTC-------TGTCACAAT 5'& .|||| .||||||| &5' --------GCCAGAATGGCTGCAGTGTT- 3' Optn mmu-miR-141 beg:86 end:107 pic:3' GGTAGAAATGGTCTGTCACAAT 5'& ||| .|||| ||||||| &5' -CATAA--GCCAGCCAGTGTT- 3' Optn mmu-miR-141star beg:467 end:489 pic:3' AGGTTGTGACGTGACCTTCTAC 5'& ||. || | | |||||.|| &5' --CAGGACAGGAG-GGAAGGTG 3' Optn mmu-miR-142-3p beg:321 end:337 pic:3' AGGTATTTCATCCT--TTGTGATGT 5'& || .|||.||| &5' -----------GGTGTGACATTAC- 3' Optn mmu-miR-143 beg:149 end:169 pic:3' CTCGATGTCACGAAGTAGAGT 5'& .|||.|||||.||. ||| &5' -GGCTGCAGTGTTTT-TCT-- 3' Optn mmu-miR-145 beg:339 end:356 pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& | ||| |||||| &5' ---GGCTCCGT-----ACTGGA- 3' Optn mmu-miR-150 beg:17 end:34 pic:3' GTGACCATGTTCCC-AACCCTCT 5'& ||| |||||||| &5' ---------AAGCTCTTGGGAGA 3' Optn mmu-miR-151-3p beg:570 end:596 pic:3' GGAGTTCCTC----GGAGTCAGATC 5'& |.|||| | ||||.||| &5' --TTAAGGCCATATCACCAGTTTAG 3' Optn mmu-miR-154 beg:524 end:543 pic:3' GCTTCCGTTGTGCCTATTGGAT 5'& ||. | ||||||.||. &5' ------CAGGAGGGATAATCTG 3' Optn mmu-miR-17star beg:141 end:161 pic:3' GATGTTCACGGG---AGTGACGTCA 5'& ||| | .||||||| &5' --------GCCAGAATGGCTGCAGT 3' Optn mmu-miR-188-5p beg:519 end:537 pic:3' GGGAGGTGGTACGTTCCCTAC 5'& | ||. || .|||||| &5' -CGTCT--CAG--GAGGGAT- 3' Optn mmu-miR-190 beg:565 end:587 pic:3' TGGATTATATAGTTT--GTATAGT 5'& .|||||.||. ||||||| &5' -----GTATATTAAGGCCATATCA 3' Optn mmu-miR-1904 beg:452 end:476 pic:3' GGAGGGAGGTC-TCC-TCGTCTTG 5'& ||. ||| .|| |||||.|| &5' ---CCTAACAGTGGGTAGCAGGAC 3' Optn mmu-miR-1954 beg:394 end:417 pic:3' TTGTCCCAGAGTGAGACGTCA 5'& ||||| .|. ||.||||| &5' AACAGCTATTTTCTTTGCAG- 3' Optn mmu-miR-1971 beg:93 end:112 pic:3' AGAGTCGGGT-CGGAAATG 5'& ||||| |..||||. &5' ---CAGCCAGTGTTTTTAT 3' Optn mmu-miR-1983 beg:256 end:280 pic:3' TCTTTTGTACGAG-GTCCACTC 5'& | .||| |||||||| &5' -GTTGACACCAGGACAGGTGAG 3' Optn mmu-miR-200a beg:142 end:164 pic:3' TGTAGCAATGGTC-------TGTCACAAT 5'& .|||| .||||||| &5' --------GCCAGAATGGCTGCAGTGTT- 3' Optn mmu-miR-200a beg:85 end:107 pic:3' TGTAGCAATGGTCTGTCACAAT 5'& |||| .|||| ||||||| &5' ACATAA--GCCAGCCAGTGTT- 3' Optn mmu-miR-200b beg:86 end:107 pic:3' AGTAGTAATGGTCCGTCATAAT 5'& ||| .|||| ||||.|| &5' -CATAA--GCCAGCCAGTGTT- 3' Optn mmu-miR-200c beg:142 end:164 pic:3' AGGTAGTAATGGGCCGTCATAAT 5'& ||| || .|. |||||.|| &5' -CCAGAATGGCT--GCAGTGTT- 3' Optn mmu-miR-219 beg:526 end:541 pic:3' TCTTAACGCAAACCTGTTAGT 5'& | |||.|||| &5' --------GGAGGGATAATC- 3' Optn mmu-miR-23b beg:315 end:331 pic:3' CCATTAGGGACC-GTTACACTA 5'& ||| |..||||| &5' --------CTGTTCGGTGTGA- 3' Optn mmu-miR-24-2star beg:175 end:194 pic:3' TGACAAAGTCGAGTCATCCGTG 5'& ||| ||.|||.||||. &5' -----TTCC-CTTAGTGGGCAT 3' Optn mmu-miR-27a beg:236 end:253 pic:3' CGCCTTGAATCGGTGACACTT 5'& .||| |||||||. &5' ----GACTGAA-CACTGTGG- 3' Optn mmu-miR-27a beg:114 end:138 pic:3' CGCCTTGAATCGGTGACACTT 5'& || ||.||||||||. &5' GCTCATGAGAGTCACTGTGAG 3' Optn mmu-miR-27b beg:236 end:253 pic:3' CGTCTTGAATCGGTGACACTT 5'& .||| |||||||. &5' ----GACTGAA-CACTGTGG- 3' Optn mmu-miR-2861 beg:330 end:348 pic:3' GGCGGGCGGCGGTCCGGGG 5'& . || .|||||.|| &5' ----TTACCCTCAGGCTCC 3' Optn mmu-miR-299 beg:74 end:93 pic:3' TTCGCCAAATGGCAGGGTGTAT 5'& ||| ||| |.||||||| &5' -AGC-----ACCCTTCCACATA 3' Optn mmu-miR-29bstar beg:77 end:100 pic:3' ATTTGGT--GGTATACTTTGGTCG 5'& ||| ||| || ||.||||| &5' ---ACCCTTCCACAT-AAGCCAGC 3' Optn mmu-miR-32 beg:191 end:211 pic:3' ACGTTGAATCAT--TACACGTTAT 5'& ||| || .||||.||| &5' -----CTT-GTTGTGTGTGTAAT- 3' Optn mmu-miR-322star beg:193 end:216 pic:3' CACAACGT-CGCG--AAGTACAAA 5'& |||||.. |.|. ||| ||| &5' -TGTTGTGTGTGTAATTC-TGT-- 3' Optn mmu-miR-327 beg:328 end:342 pic:3' TAGGAGTACGGGGAGTTCA 5'& ||| ||||||.| &5' -----CATTACCCTCAGG- 3' Optn mmu-miR-342-5p beg:65 end:86 pic:3' GAGTTAGTGTCTATCGTGGGGA 5'& |||| .| ||||||||.| &5' ---AATC-TAATTAGCACCCTT 3' Optn mmu-miR-3473 beg:0 end:13 pic:3' CCGACTCGGTAGAGAGGT 5'& |. |||||||| &5' ------GTGTTCTCTCCA 3' Optn mmu-miR-367 beg:192 end:212 pic:3' AGTGGTAACGATTTCACGTTAA 5'& . |||. |||.|||| &5' ---TTGTTGTGT--GTGTAATT 3' Optn mmu-miR-421 beg:243 end:264 pic:3' CGCGGGTTA-ATTACAGACAACTA 5'& || |..| |||||||| &5' -----CACTGTGGTATCTGTTGA- 3' Optn mmu-miR-429 beg:147 end:164 pic:3' TGCCGTAATGGTCTGTCATAAT 5'& |.||| .||||.|| &5' ATGGCT-------GCAGTGTT- 3' Optn mmu-miR-431 beg:459 end:477 pic:3' ACGTACTGCCGGACGTTCTGT 5'& | .|| . |||.|||| &5' -----G-TGGGTAGCAGGACA 3' Optn mmu-miR-450a-3p beg:0 end:21 pic:3' TACTTACGTTTCG---TAGGGGTTA 5'& .||. .||||||| &5' ----GTGTTCTCTCCAGTCCCCAA- 3' Optn mmu-miR-450b-5p beg:590 end:611 pic:3' ATAAGTCC-TTGTATGACGTTTT 5'& ||.|| |||| .|||||| &5' --TTTAGTAAACACCTTGCAAA- 3' Optn mmu-miR-452 beg:599 end:612 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& ||| ||||||| &5' ----------CCT-TGCAAAC- 3' Optn mmu-miR-452 beg:396 end:419 pic:3' CAGAGTC---AAAGGAGACGTTTGT 5'& ||| |||.||.||||.|. &5' ----CAGCTATTTTCTTTGCAGAT- 3' Optn mmu-miR-465b-5p beg:154 end:174 pic:3' GTCTAGTCGTGGTAAGATTTAT 5'& ||| . |||||..|| &5' -----CAGTGTTTTTCTAGGTA 3' Optn mmu-miR-466i beg:184 end:209 pic:3' ATCACACAT---AC-ACACACACATA 5'& |||| || |||||||||| &5' -AGTGGGCATCTTGTTGTGTGTGTA- 3' Optn mmu-miR-483star beg:468 end:492 pic:3' TTCTGCCCTCCCCTCCTCACT 5'& |.||| |||||| ||| |||. &5' AGGACAGGAGGGAAGGTGTGG 3' Optn mmu-miR-505 beg:249 end:265 pic:3' TCTTTTGGTCGTTCACAACTGC 5'& .|.| ||||||| &5' --------GGTATCTGTTGAC- 3' Optn mmu-miR-509-5p beg:289 end:307 pic:3' TACTAACGGTGTAA-GACCTCAT 5'& ||. || .|||||| &5' ------GCT-CAGGATTGGAGT- 3' Optn mmu-miR-511 beg:460 end:484 pic:3' ACTCA-CGTCTCGTTTTCCGTA 5'& ||.|| |||| ||..||| | &5' TGGGTAGCAGGACAGGAGGGA- 3' Optn mmu-miR-541 beg:291 end:311 pic:3' TCACACTGGTTGTAGTCTTAGGGAA 5'& | ||. || ||.|||.| &5' -----GCTCAGGATTGGAGTCCTT- 3' Optn mmu-miR-678 beg:426 end:454 pic:3' GGAGGT----CAGGAAC-GTGGCTCTG 5'& ||. |||. | |||.|||| &5' -CTTACAGATGTCTGAGACACTGAGA- 3' Optn mmu-miR-681 beg:133 end:157 pic:3' TCGACGGACGGTCGCTCCGAC 5'& ||| |.| ||||| ||||| &5' AGCAGTCAGCCAGAATGGCTG 3' Optn mmu-miR-682 beg:542 end:561 pic:3' GTCTGAAGTGACACTGACGTC 5'& |||| |||||||.| &5' CAGAATA----GTGACTGTA- 3' Optn mmu-miR-682 beg:143 end:160 pic:3' GTCTGAAGTGACACTGACGTC 5'& |||| ||.|||||| &5' CAGAA-------TGGCTGCAG 3' Optn mmu-miR-692 beg:48 end:68 pic:3' CTCACTCCG-CGA-GTTTCTCTA 5'& ||| |. |||||||. &5' -----AGGAAGTCACAAAGAGG- 3' Optn mmu-miR-694 beg:93 end:111 pic:3' GAAGTCCGTTGTAAAAGTC 5'& ||| ||. ||||.| &5' ---CAGCCAGTGTTTTTA- 3' Optn mmu-miR-698 beg:476 end:506 pic:3' TCCCTTCC--------TTTGCTCTTAC 5'& |||||||| .|..||||.|| &5' AGGGAAGGTGTGGGAAGAGTGAGAGTG 3' Optn mmu-miR-706 beg:148 end:169 pic:3' AAAAAACTC-TGTCCCAAAGAGA 5'& ||. .||| ||||.||| &5' -----TGGCTGCAGTGTTTTTCT 3' Optn mmu-miR-708 beg:7 end:28 pic:3' GGGTCGATCTAACATTCGAGGAA 5'& ||||. ||||||.| &5' -CCAGTCCCCA---AAGCTCTT- 3' Optn mmu-miR-709 beg:303 end:324 pic:3' AGGAGGACGGAGACGG-AGG 5'& ||||.| |||| ||. |.| &5' TCCTTC--CCTCAGCTGTTC 3' Optn mmu-miR-743a beg:91 end:110 pic:3' AGATGAGTCGAACCACAGAAAG 5'& .| |||| ||||.||| &5' ---GC-CAGCCA-GTGTTTTT- 3' Optn mmu-miR-743b-3p beg:149 end:168 pic:3' AGATAAGTCGTAC-TACAGAAAG 5'& .|| .|||.|||| &5' -------GGCTGCAGTGTTTTTC 3' Optn mmu-miR-743b-5p beg:225 end:248 pic:3' ACTACCTGTGGT---CAGACTTGT 5'& .||| | |. | ||||||| &5' --GTGG-CTCTTTCTGACTGAACA 3' Optn mmu-miR-744 beg:333 end:351 pic:3' ACGACAATCGGGA--TCGGGGCGT 5'& |||| .||.|||.| &5' ---------CCCTCAGGCTCCGTA 3' Optn mmu-miR-758 beg:271 end:293 pic:3' ATCAC-CTG-GTCCAGTGTTT 5'& .||| || .||| ||||. &5' -GGTGAGAGATAGGG-ACAAG 3' Optn mmu-miR-758 beg:40 end:64 pic:3' ATCACCTGG---TCC---AGTGTTT 5'& |||||| ||| ||||||| &5' ---TGGACCGACAGGAAGTCACAAA 3' Optn mmu-miR-876-5p beg:48 end:74 pic:3' ATCACTAAGTG--TCTCTTTAGGT 5'& || |||| ||||.||||.| &5' -AGGAAGTCACAAAGAGGAATCTA 3' Optn mmu-miR-881star beg:222 end:240 pic:3' TCTACACTGACAATAGAGAGAC 5'& |||||.| |||.|||| &5' --ATGTGGC-----TCTTTCTG 3' Optn mmu-miR-882 beg:0 end:12 pic:3' TGATTACGCGATTGAGAGAGGA 5'& |.|. ||||||| &5' ------GTGT----TCTCTCC- 3' Optn mmu-miR-185 beg:0 end:13 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& |. ||||||||| &5' ---------GTG-TTCTCTCCA 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Optn RAID00070381 mmu-miR-7688-3p miRNA MIMAT0029907 Optn mRNA 71648 Prediction 0.1828 Optn RAID00150505 mmu-miR-26b-3p miRNA MIMAT0004630 Optn mRNA 71648 Prediction 0.1828 Optn RAID00156527 mmu-miR-7092-3p miRNA MIMAT0028091 Optn mRNA 71648 Prediction 0.1828 Optn RAID00181927 mmu-miR-467a-3p miRNA MIMAT0002108 Optn mRNA 71648 Prediction 0.1828 Optn RAID00227318 mmu-miR-204-5p miRNA MIMAT0000237 Optn mRNA 71648 Prediction 0.1828 Optn RAID00347733 mmu-miR-7a-5p miRNA MIMAT0000677 Optn mRNA 71648 Prediction 0.1828 Optn RAID00376739 mmu-miR-26a-2-3p miRNA MIMAT0017058 Optn mRNA 71648 Prediction 0.1828 Optn RAID00401815 mmu-miR-421-3p miRNA MIMAT0004869 Optn mRNA 71648 Prediction 0.1828 Optn RAID00427902 mmu-miR-539-5p miRNA MIMAT0003169 Optn mRNA 71648 Prediction 0.1828 Optn RAID00435987 mmu-miR-3085-3p miRNA MIMAT0014879 Optn mRNA 71648 Prediction 0.1828 Optn RAID00439369 mmu-miR-7243-3p miRNA MIMAT0029911 Optn mRNA 71648 Prediction 0.1828 Optn RAID00465747 mmu-miR-6928-3p miRNA MIMAT0027757 Optn mRNA 71648 Prediction 0.1828 Optn RAID00530190 mmu-miR-7018-5p miRNA MIMAT0027940 Optn mRNA 71648 Prediction 0.1828 Optn RAID00599732 mmu-miR-128-3p miRNA MIMAT0000140 Optn mRNA 71648 Prediction 0.2202 Optn RAID00666394 mmu-miR-101b-3p miRNA MIMAT0000616 Optn mRNA 71648 Prediction 0.1828 Optn RAID00697881 mmu-miR-669b-3p miRNA MIMAT0017250 Optn mRNA 71648 Prediction 0.1828 Optn RAID00734482 mmu-miR-6935-3p miRNA MIMAT0027771 Optn mRNA 71648 Prediction 0.1828 Optn RAID00814078 mmu-miR-3064-5p miRNA MIMAT0014834 Optn mRNA 71648 Prediction 0.1828 Optn RAID00835380 mmu-miR-6539 miRNA MIMAT0025584 Optn mRNA 71648 Prediction 0.1828 Optn RAID00945911 mmu-miR-7034-3p miRNA MIMAT0027973 Optn mRNA 71648 Prediction 0.1828 Optn RAID00950727 mmu-miR-466i-3p miRNA MIMAT0005834 Optn mRNA 71648 Prediction 0.1828 Optn RAID01015179 mmu-miR-486a-5p miRNA MIMAT0003130 Optn mRNA 71648 Prediction 0.1828 Optn RAID01042260 mmu-miR-6918-3p miRNA MIMAT0027737 Optn mRNA 71648 Prediction 0.1828 Optn RAID01053623 mmu-miR-295-3p miRNA MIMAT0000373 Optn mRNA 71648 Prediction 0.1828 Optn RAID01068756 mmu-miR-200a-3p miRNA MIMAT0000519 Optn mRNA 71648 Prediction 0.1828 Optn RAID01130030 mmu-miR-141-3p miRNA MIMAT0000153 Optn mRNA 71648 Prediction 0.1828 Optn RAID01217845 mmu-miR-882 miRNA MIMAT0004847 Optn mRNA 71648 Prediction 0.1828 Optn RAID01458420 mmu-miR-7b-5p miRNA MIMAT0000678 Optn mRNA 71648 Prediction 0.1828 Optn RAID01499436 mmu-miR-758-3p miRNA MIMAT0003889 Optn mRNA 71648 Prediction 0.1828 Optn RAID01535612 mmu-miR-27b-3p miRNA MIMAT0000126 Optn mRNA 71648 Prediction 0.1828 Optn RAID01645280 mmu-miR-6899-5p miRNA MIMAT0027698 Optn mRNA 71648 Prediction 0.1828 Optn RAID01689343 mmu-miR-335-5p miRNA MIMAT0000766 Optn mRNA 71648 Prediction 0.1828 Optn RAID01813584 mmu-miR-505-3p miRNA MIMAT0003513 Optn mRNA 71648 Prediction 0.1828 Optn RAID01908024 mmu-miR-7119-3p miRNA MIMAT0028136 Optn mRNA 71648 Prediction 0.1828 Optn RAID01918409 mmu-miR-27a-3p miRNA MIMAT0000537 Optn mRNA 71648 Prediction 0.1828 Optn RAID02010511 mmu-miR-674-3p miRNA MIMAT0003741 Optn mRNA 71648 Prediction 0.1828 Optn RAID02122067 mmu-miR-669f-3p miRNA MIMAT0005839 Optn mRNA 71648 Prediction 0.1828 Optn RAID02184630 mmu-let-7g-3p miRNA MIMAT0004519 Optn mRNA 71648 Prediction 0.1828 Optn RAID02256176 mmu-miR-6932-3p miRNA MIMAT0027765 Optn mRNA 71648 Prediction 0.1828 Optn RAID02477321 mmu-miR-1892 miRNA MIMAT0007871 Optn mRNA 71648 Prediction 0.1828 Optn RAID02507913 mmu-miR-185-5p miRNA MIMAT0000214 Optn mRNA 71648 Prediction 0.1828 Optn RAID02516846 mmu-miR-7652-3p miRNA MIMAT0029811 Optn mRNA 71648 Prediction 0.1828 Optn RAID02581758 mmu-miR-101a-3p miRNA MIMAT0000133 Optn mRNA 71648 Prediction 0.1828 Optn RAID02901756 mmu-miR-7039-3p miRNA MIMAT0027983 Optn mRNA 71648 Prediction 0.1828 Optn RAID03110300 mmu-miR-669c-3p miRNA MIMAT0017253 Optn mRNA 71648 Prediction 0.1828 Optn RAID03187376 mmu-miR-211-5p miRNA MIMAT0000668 Optn mRNA 71648 Prediction 0.1828 Optn RAID03399229 mmu-miR-150-5p miRNA MIMAT0000160 Optn mRNA 71648 Prediction 0.1828 Optn RAID03501062 mmu-miR-7679-5p miRNA MIMAT0029872 Optn mRNA 71648 Prediction 0.1828 Optn RAID03582711 mmu-miR-186-5p miRNA MIMAT0000215 Optn mRNA 71648 Prediction 0.1828 Optn RAID03705343 mmu-miR-302a-3p miRNA MIMAT0000380 Optn mRNA 71648 Prediction 0.1828 Optn RAID03730361 mmu-miR-542-3p miRNA MIMAT0003172 Optn mRNA 71648 Prediction 0.1828