DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000137 mmu-miR-126-5p 53885 Nphp1 gcgcauggUUUUCAUUAUUAc |:|| ||||||| auuuucaaAGAACUAAUAAUa 2 14 120 140 [mm9:2:127566512-127566532:-] 0.4851 153 7 -5.80 -1.1314 MIMAT0004534 mmu-miR-145* 53885 Nphp1 guucuUGUCAUAAAGGUCCUUa | :| : ||||||||| gacccAGGGAGCUUCCAGGAAg 2 18 27 48 [mm9:2:127566604-127566625:-] 0.4488 153 7 -17.90 -0.2825 MIMAT0000367 mmu-miR-291a-5p 53885 Nphp1 ucucucccggaggugAAACUAc |||||| aagaacuaauaauaaUUUGAUu 2 8 127 148 [mm9:2:127566504-127566525:-] 0.4851 120 6 -6.00 -0.1207 MIMAT0004617 mmu-miR-148a* 53885 Nphp1 ucagccUCACAGAGUCUUGAaa | | || |||||| aauaauAUUUUCAAAGAACUaa 3 17 114 135 [mm9:2:127566517-127566538:-] 0.4851 128 0 -6.31 -0.3422 MIMAT0004629 mmu-miR-22* 53885 Nphp1 auuucgaacggugacUUCUUGa |||||| caaauaauauuuucaAAGAACu 2 8 112 133 [mm9:2:127566519-127566540:-] 0.4851 120 6 -7.55 -0.1769 MIMAT0004640 mmu-miR-325 53885 Nphp1 aacuauccuccacgaGUUAUUu |||||| ugauugaguguaaaaCAAUAAa 2 8 144 165 [mm9:2:127566487-127566508:-] 0.5033 120 6 -10.92 -0.4209 MIMAT0004666 mmu-miR-33* 53885 Nphp1 caCUACGUGACACCUUUGUAAc ||| | ||| ||||| | uuGAUUGAGUGU-AAAACAAUa 2 21 143 163 [mm9:2:127566489-127566509:-] 0.5033 122 0 -6.70 -0.1619 MIMAT0001637 mmu-miR-452 53885 Nphp1 cagagucAAAGGAGACGUUUGu |||: | ||||||: cauaugcUUUUGUGUGCAAAUa 2 16 96 117 [mm9:2:127566535-127566556:-] 0.4851 139 0 -10.59 -0.1307 MIMAT0003189 mmu-miR-291b-5p 53885 Nphp1 ccucucccggaggugAAACUAg |||||| aagaacuaauaauaaUUUGAUu 2 8 127 148 [mm9:2:127566504-127566525:-] 0.4851 120 6 -9.74 -0.1207 MIMAT0003462 mmu-miR-684 53885 Nphp1 aaCUGAACUUCCCUUUUGa || ||||: | ||||| uuGA-UUGAGUGUAAAACa 2 18 143 160 [mm9:2:127566492-127566509:-] 0.5033 127 0 -9.15 -0.1030 MIMAT0003474 mmu-miR-694 53885 Nphp1 gaaGUCCGUUGUAAAAGUc || :||:||||||| gugCAAAUAAUAUUUUCAa 2 17 109 127 [mm9:2:127566525-127566543:-] 0.4851 156 7 -11.04 -1.2801 MIMAT0003500 mmu-miR-710 53885 Nphp1 gagUUGAGAGGGGUUCUGAACc |:||: | |||||||| gggAGCUUCCAGGAAGACUUGc 2 20 33 54 [mm9:2:127566598-127566619:-] 0.4488 155 7 -18.27 -0.1481 MIMAT0003511 mmu-miR-450b-5p 53885 Nphp1 auaaguccuuguaugACGUUUu |||||| ucauaugcuuuugugUGCAAAu 2 8 95 116 [mm9:2:127566536-127566557:-] 0.4851 120 6 -6.62 -0.1073 MIMAT0004938 mmu-miR-875-3p 53885 Nphp1 guaucggaGUCAUAAAAGUcc :| |||||||| ugugcaaaUAAUAUUUUCAaa 3 14 108 128 [mm9:2:127566524-127566544:-] 0.4851 133 0 -6.07 -0.2146 MIMAT0005834 mmu-miR-466i 53885 Nphp1 aucacacAUAC--ACACACACAUa |||| | |||||| | guagucaUAUGCUUUUGUGUGCAa 2 16 91 114 [mm9:2:127566538-127566561:-] 0.4851 122 0 -11.68 -0.1353 MIMAT0005838 mmu-miR-669j 53885 Nphp1 acAAACGUACACUCA-UAUACGu || | | || ||| |||||| ggUUAGAACGU-AGUCAUAUGCu 2 21 82 103 [mm9:2:127566549-127566570:-] 0.4851 126 6 -10.48 -0.7726 MIMAT0007866 mmu-miR-1905 53885 Nphp1 gauggcgcaccaccCUGACCAc ||||||| cugagccaaagacaGACUGGUu 2 9 64 85 [mm9:2:127566567-127566588:-] 0.4851 140 7 -12.68 -0.7278 MIMAT0000210 mmu-miR-181a 53885 Nphp1 ugaguggcugucgcAACUUACAa ||||:||| uaauaauaauuugaUUGAGUGUa 2 10 133 155 [mm9:2:127566497-127566519:-] 0.5033 129 0 -8.44 -0.1261 MIMAT0000219 mmu-miR-24 53885 Nphp1 gacaaggacgacUUGACUCGGu ||||||||| cuugccucaaacAACUGAGCCa 2 11 50 71 [mm9:2:127566581-127566602:-] 0.4669 150 7 -20.99 -1.0161 MIMAT0004651 mmu-miR-340-5p 53885 Nphp1 uuagucagaguaacGAAAUAUu :|||||| aacaauaaaauaaaUUUUAUAa 2 9 157 178 [mm9:2:127566474-127566495:-] 0.5214 124 6 -4.35 -0.2617 MIMAT0000673 mmu-miR-181b 53885 Nphp1 uggguggcugucgUUACUUACAa | |||:||| uaauaauaauuugAUUGAGUGUa 2 11 133 155 [mm9:2:127566497-127566519:-] 0.5033 126 0 -8.31 -0.1261 MIMAT0000674 mmu-miR-181c 53885 Nphp1 ugaguggcuguCCAACUUACAa | ||||:||| aauaauaauuuGAUUGAGUGUa 2 12 134 155 [mm9:2:127566497-127566518:-] 0.5033 131 0 -8.41 -0.1261 MIMAT0000741 mmu-miR-377 53885 Nphp1 uguuuucaACGGAAACACACua |||:|||||||| uagucauaUGCUUUUGUGUGca 3 15 92 113 [mm9:2:127566539-127566560:-] 0.4851 146 0 -17.80 -0.3083 MIMAT0004750 mmu-miR-425 53885 Nphp1 agUUGCCCUCACUAGCA-CAGUAa :|| || || ||| ||||| caGACUGGUUAGAACGUAGUCAUa 2 22 76 99 [mm9:2:127566553-127566576:-] 0.4851 125 0 -14.04 -0.7753 MIMAT0004324 mmu-miR-181d 53885 Nphp1 ugGGUGGCUGUUG---UUACUUACAa |:| : |:||: | |||:||| aaCUAAUAAUAAUUUGAUUGAGUGUa 2 22 130 155 [mm9:2:127566497-127566522:-] 0.5033 132 0 -12.27 -0.1261 MIMAT0004896 mmu-miR-590-3p 53885 Nphp1 ugaUCG-AAUAUG-UAUUUUAau ||: | | || ||||||| uugAGUGUAAAACAAUAAAAUaa 3 19 147 169 [mm9:2:127566483-127566505:-] 0.5033 132 0 -4.09 -0.4622

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G021710 Nphp1 Mus musculus 53885

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Nphp1 mmu-miR-710 beg:35 end:54 pic:3' GAGTTGAGAGGGG--TTCTGAACC 5'& ||.|| |||||||| &5' -------CTTCCAGGAAGACTTG- 3' Nphp1 mmu-miR-145star beg:30 end:48 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ..||.| ||||||||| &5' -GGGAGC-----TTCCAGGAA- 3' Nphp1 mmu-let-7c beg:38 end:59 pic:3' TTGGTATG-TTGGATGATGGAGT 5'& ||| .||. |.||||| &5' --CCAGGAAGACT---TGCCTCA 3' Nphp1 mmu-let-7e beg:47 end:59 pic:3' TTGATATGTTGGAGGATGGAGT 5'& |.|.||||| &5' -------------CTTGCCTCA 3' Nphp1 mmu-let-7f beg:39 end:59 pic:3' TTGATATGTTAGA-TG-ATGGAGT 5'& ||. || |.||||| &5' -------CAGGAAGACTTGCCTCA 3' Nphp1 mmu-let-7g beg:41 end:59 pic:3' TTGACATGTTTGATGATGGAGT 5'& | |.||| |.||||| &5' ----GGA-AGACT--TGCCTCA 3' Nphp1 mmu-let-7i beg:39 end:59 pic:3' TTGTCGTGTTTGATGATGGAGT 5'& ||| | |.||| |.||||| &5' --CAGGA-AGACT--TGCCTCA 3' Nphp1 mmu-miR-125a-3p beg:34 end:57 pic:3' CCGAGGGTTCTTG-GAGTGGACA 5'& |||.|||.||| || ||| &5' -GCTTCCAGGAAGACTTGCCT-- 3' Nphp1 mmu-miR-195 beg:91 end:113 pic:3' CGGT-TATAAAGACACGACGAT 5'& |.|| ||. ||.|||| ||| &5' GTCATATGCTTTTGTG-TGC-- 3' Nphp1 mmu-miR-1961 beg:45 end:59 pic:3' AAGATTGATGATGGAGT 5'& .||| |.||||| &5' ----GACT--TGCCTCA 3' Nphp1 mmu-miR-24 beg:47 end:72 pic:3' GACAAGGACGAC-----TTGACTCGGT 5'& |.||| |||||||||| &5' -----CTTGCCTCAAACAACTGAGCCA 3' Nphp1 mmu-miR-3475 beg:27 end:46 pic:3' AAGTTTGGTA-CACGGAGGTCT 5'& ||| | ||.|||||. &5' ------CCAGGGAGCTTCCAGG 3' Nphp1 mmu-miR-423-3p beg:45 end:70 pic:3' TGACTCCCCGGAGTC---TGGCTCGA 5'& || |||||| ||.|||| &5' ---GACTTGCCTCAAACAACTGAGC- 3' Nphp1 mmu-miR-432 beg:24 end:47 pic:3' GAC-GGGTGACTAGATGAGGTTCT 5'& | |||| || .||||.|| &5' --GACCCAGGGAGC--TTCCAGGA 3' Nphp1 mmu-miR-452 beg:100 end:118 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& |||. | ||||||.| &5' -------TTTTGTGTGCAAATA 3' Nphp1 mmu-miR-470 beg:19 end:48 pic:3' TGAGTGGTCACGGTC------AGGTTCTT 5'& ||| | |||| ||||.||| &5' ---CACTGGACCCAGGGAGCTTCCAGGAA 3' Nphp1 mmu-miR-540-3p beg:38 end:57 pic:3' GGTCCTAGCTGGAGACTGGA 5'& |||||| |||.| .||| &5' CCAGGAA-GACTT---GCCT 3' Nphp1 mmu-miR-669j beg:97 end:114 pic:3' ACAAACGTACACTCATATACGT 5'& ||| |.|.|||| &5' ----TGCTTT----TGTGTGCA 3' Nphp1 mmu-miR-670 beg:16 end:37 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& ||| |||| |. || |||||| &5' TTC-CCAC-TGGACCCAGGGA- 3' Nphp1 mmu-miR-691 beg:34 end:48 pic:3' AAAAGACGGAGAGAAGTCCTTA 5'& ||.|| |||||| &5' ------GCTTC----CAGGAA- 3' Nphp1 mmu-miR-760 beg:15 end:36 pic:3' AGGGGTG-TCTGGGTCTCGGC 5'& |.||||| .|||||||.| &5' TTCCCACTGGACCCAGGG--- 3' Nphp1 mmu-miR-9 beg:57 end:76 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& ||| ||. |.||||||| &5' ----ACAACTG---AGCCAAAGA 3' Nphp1 mmu-miR-98 beg:39 end:59 pic:3' TTGTTATGTTGAATGATGGAGT 5'& ||. .||| |.||||| &5' --CAGGAAGACT---TGCCTCA 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Nphp1 mmu-let-7i 35 60 UGUCGU--GUUUGA-UG-AUGGAGU- ||| ||:: || |:||||| -GAGCUUCCAGGAAGACUUGCCUCAA Nphp1 mmu-miR-126-5p 106 141 GCGCAUGG--------------UUUUCAUUAUUAC |:||:| |:|| ||||||| UGUGUGCAAAUAAUAUUUUCAAAGAACUAAUAAUA Nphp1 mmu-miR-134 79 101 GGGGAGACCAGU--UG-GUCAGUGU- |||||:| || :|||||:| ----ACUGGUUAGAACGUAGUCAUAU Nphp1 mmu-miR-149 33 73 -CCUCA------CUUCUG------------UGCCUCGGUCU |||| |||||| || |||||| GGGAGCUUCCAGGAAGACUUGCCUCAAACAACUGAGCCAA- Nphp1 mmu-miR-24 49 73 GACAAGGACGAC-----UUGACUCGGU- |:||| |||||||||| ----ACUUGCCUCAAACAACUGAGCCAA Nphp1 mmu-miR-28 21 44 GAGUUAUCUGACA--CUCGA-GGAA || |:||| ||||| || -CCACUGGACCCAGGGAGCUUCCA- Nphp1 mmu-miR-300 31 56 CUUCUCUCGAACGG-------GAACGUAU ||:|||||| || ||||| -CAGGGAGCUU-CCAGGAAGACUUGCC-- Nphp1 mmu-miR-31 35 58 GUCGAUACGGUCGUA--GAACGGA- |||| |||| | ||||||| GAGCUU--CCAGGAAGACUUGCCUC Nphp1 mmu-miR-324-5p 5 40 GUGGUUACGG----------GAUC-----CCCUACGC ||| ||||: ||:| |||| || GACC-AUGCUCCGAUUCCCACUGGACCCAGGGA-GCU Nphp1 mmu-miR-326 22 47 -UGACCU----CCUUCCCGGGUCUCC |||||| ||:|| :||||: CACUGGACCCAGGGAGCUUCCAGGA- Nphp1 mmu-miR-331 11 40 AAGAUCCUAU------CC-GGGUCCC-CG- || ||| || ||||||| || -GCUCCGAUUCCCACUGGACCCAGGGAGCU Nphp1 mmu-miR-339 10 38 ACUCGAGG---------ACCUCCUGUCCCU- ||||| |||| |||||| --UGCUCCGAUUCCCACUGGACC-CAGGGAG Nphp1 mmu-miR-342 77 113 -CUGCCCACGCUA-------------AAGACACACUCU ||| ||| || ||:|||||| AGACUGGUUAGAACGUAGUCAUAUGCUUUUGUGUGC-- Nphp1 mmu-miR-346 25 52 -UCUCCGUCCG-UGAGC--CCGUCUGU :|| |||| :||: || |||| UGGACCCAGGGAGCUUCCAGGAAGACU Nphp1 mmu-miR-34a 1 34 -UUGUUGGU-CGAUUCU----GUGAC---GGU- ::|:|||| ||| || ||||| ||| UGGCGACCAUGCUCCGAUUCCCACUGGACCCAG Nphp1 mmu-miR-351 1 38 GUCCGA--GUUUCCCGAGGA--------------GUCCCU ||| || ||||| |||||| -UGGCGACCAU---GCUCCGAUUCCCACUGGACCCAGGGAG Nphp1 mmu-miR-362 17 38 -AAGUGUGGAUCCAAGGUUCCUAA ||| |||: || |||:||| AUUCCCACU--GGACCCAGGGAG- Nphp1 mmu-miR-377 74 113 -UGUUU--UCA---------------ACGGAAACACACUA |||:| :|| |||:|||||||| GACAGACUGGUUAGAACGUAGUCAUAUGCUUUUGUGUGC- Nphp1 mmu-miR-423 23 71 -GAC-----UCCC-CGGAG-----UCUGG--------------CUCGA ||| |||| ||:|| ||||: |||| ACUGGACCCAGGGAGCUUCCAGGAAGACUUGCCUCAAACAACUGAGCC Nphp1 mmu-miR-425 1 24 -CCGCCUGUGCUG---UAAGGGCUA |||| ||:| |||||| UGGCGACCAUGCUCCGAUUCCCA-- Nphp1 mmu-miR-449 5 34 -UGGU-CGAUUGUUAU--GUGAC---GGU- |||| ||| |:|| ||||| ||| GACCAUGCUC-CGAUUCCCACUGGACCCAG Nphp1 mmu-miR-468 72 101 GUCUG--UGUGCG----UGUAGUCAGUAU- |||| || |: ||:| ||||||| AAGACAGACUGGUUAGAACGU-AGUCAUAU Nphp1 mmu-miR-470 21 49 AGUGGUCACGGUC------AGGUUCUU- |||::| |||| ||||:||| CCACUGGACCCAGGGAGCUUCCAGGAAG Nphp1 mmu-miR-490 25 47 GUCGUA---CCUCAGGAGGUCCAAC :| |||| |:|||||| UGGACCCAGGGAG-CUUCCAGGA-- Nphp1 mmu-miR-491 19 45 -GGAGU-ACCU---UCCCAAGG-GGUGA || || |||| |||| |: ||| UCC-CACUGGACCCAGGGAGCUUCCAG- Nphp1 mmu-miR-541 4 24 ACACUGGU-UGUAGUCUUAGGGAA ||||| :| || || |||| --CGACCAUGC-UCCGAUUCCCA- Nphp1 mmu-miR-665 25 47 AUUCCCUGGAG---UCGGAGGACCA ||||| |||:||| || ---UGGACCCAGGGAGCUUCCAGGA Nphp1 mmu-miR-670 17 38 -AAGUGGUGUAUGUGAGUCCCUA ||| |||| |: || |||||| AUUC-CCAC-UGGACCCAGGGAG Nphp1 mmu-miR-671 11 44 GGAGGUC--GGG-GA----GGUCC--CGAAGGA ||||: ||| || ||||| |||||| GCUCCGAUUCCCACUGGACCCAGGGAGCUUCCA Nphp1 mmu-miR-678 37 72 -GGAGGUCAG---GAACG--------UGGCUCUG- |:||||| ||||| ||:||| | GCUUCCAGGAAGACUUGCCUCAAACAACUGAGCCA Nphp1 mmu-miR-687 33 48 AGUAACGACGUAAGGUCCUAUC | || |||||||| ----GGGAGC-UUCCAGGAA-- Nphp1 mmu-miR-694 104 128 GAAGUC-CGU----UGUAAAAGUC || | ||| |:||||||| UUUGUGUGCAAAUAAUAUUUUCAA Nphp1 mmu-miR-705 9 34 -ACG-GGU--GGGGUGGA--GGGUGG ||| ||: :|||||: |||| AUGCUCCGAUUCCCACUGGACCCAG- Nphp1 mmu-miR-709 37 59 AGGAGGA-CG---GAGACGGAGG |:||| | || |||||| GCUUCCAGGAAGACU-UGCCUCA Nphp1 mmu-miR-710 23 55 -GAGUUGA-------GAGGGG--UUCUGAACC || :|| ||:|| |||||||| ACUGGACCCAGGGAGCUUCCAGGAAGACUUGC Nphp1 mmu-miR-711 7 33 GAAUGUA-GAG----AGGG-GCCCAGGG- ||| ||| |||| | || ||| ---CCAUGCUCCGAUUCCCACUGGACCCA Nphp1 mmu-miR-712* 27 56 GUUGUGGG-CCC--------CCA-CUGAGCGU |||| ||| || ||||:|| ---GACCCAGGGAGCUUCCAGGAAGACUUGCC Nphp1 mmu-miR-762 10 43 -CGAGAC--AGGG---CC-GGGG---UCGGGG- |||| | |||| || ||| |||::| UGCUCCGAUUCCCACUGGACCCAGGGAGCUUCC Nphp1 mmu-miR-763 20 37 CGGUGACCAAGAAGGGUCGACC- ||||||| ||||| || CCCACUGGA----CCCAG--GGA Nphp1 mmu-miR-770-3p 6 36 -GGU-CGAGGUGCAGU----CC-GGGUGC- ||| |||||: || || |||| | ACCAUGCUCCGAUUCCCACUGGACCCAGGG Nphp1 mmu-miR-9 59 77 GUAUGUCGAUCUAUUGGUUUCU- ||| ||: |:||||||| --AACAACUG---AGCCAAAGAC Nphp1 mmu-miR-126-5p 133 140 --------GCGCAUGG--------------UUUUCAUUAUUAC :|:||:| |:|| ||||||| UAUGCUUUUGUGUGCAAAUAAUAUUUUCAAAGAACUAAUAAUA Nphp1 mmu-miR-126-5p 136 143 -----GCGCAUGGUUUUC-----------------AUUAUUAC :|:||:| ||||||| GCUUUUGUGUGCAAAUAAUAUUUUCAAAGAACUAAUAAUAAUU Nphp1 mmu-miR-24 64 71 GACAA----------------GGACGAC-----UUGACUCGGU |:||| |||||||||| CCCAGGGAGCUUCCAGGAAGACUUGCCUCAAACAACUGAGCCAA Nphp1 mmu-miR-694 120 127 GAA------------------------GUCCGUUGUAAAAGUC || :||:||||||| UAGAACGUAGUCAUAUGCUUUUGUGUGCAAAUAAUAUUUUCAA Nphp1 mmu-miR-710 47 54 ------------GAGUUGA-------GAGGGG--UUCUGAACC || :|| ||:|| |||||||| CUCCGAUUCCCACUGGACCCAGGGAGCUUCCAGGAAGACUUGC Nphp1 mmu-let-7i 41 58 uGUCGUGUUUGAUGAUGGAGU ||| | |:|| :|:||||| cCAGGA-AGAC--TTGCCTCA Nphp1 mmu-miR-134 75 99 ggggaGACCAG--UUG-GUCAGUGU |||||: ||| :|||||:| acagaCTGGTTAGAACGTAGTCATA Nphp1 mmu-miR-149 12 34 ccucacuucuGUG-CCUCGGUCu ||| ||| |||| ctccgattccCACTGGACCCAGg Nphp1 mmu-miR-24 50 71 GACAAGGACG--ACUUGACUCGGU || | ||| | |||||||||| CT-TGCCT-CAAACAACTGAGCCA Nphp1 mmu-miR-28 20 43 GAGUUAUCU--GACACUCGAGGaa | || |:|| | | |||||:| CCCACTGGACCCAGGGAGCTTCca Nphp1 mmu-miR-300 30 57 cuUCUCUCGAACGG-------GAACGUAu ||:|||||| || ||||| | ccAGGGAGCTT-CCAGGAAGACTTGCCTc Nphp1 mmu-miR-324-5p 12 39 GUGGUUACGG--GAUC-----CCCUACGc | ||:|| || ||:| |||| || CTCCGATTCCCACTGGACCCAGGGA-GCt Nphp1 mmu-miR-326 23 36 UGACCUCCUUCCCGGGUCUCc |||||| |||||:| ACTGGA-------CCCAGGGa Nphp1 mmu-miR-331 17 37 aagauccuAUCCGGGUCCCcg |:| ||||||| attcccacTGGACCCAGGGag Nphp1 mmu-miR-339 15 36 aCUCGAGGACCUCCU--GUCCCU || :||| ||| |||||| cGA-TTCCCACTGGACCCAGGGA Nphp1 mmu-miR-342 78 114 CUGCCCA--C--GC-------UA--AAGACACACucu ||| ||| | || || ||:|||||| GACTGGTTAGAACGTAGTCATATGCTTTTGTGTGcaa Nphp1 mmu-miR-346 26 51 uCUCCGUCCGU-GA--GCCCGUCUGu || |||| | || | || |||| gGACCCAGGGAGCTTCCAGGAAGACt Nphp1 mmu-miR-34a 2 31 uuGUUGGU-CGAUUCU----GUGAC--GGu |:|||| ||| || ||||| || ggCGACCATGCTCCGATTCCCACTGGACCc Nphp1 mmu-miR-351 8 36 GUCCGA-GUUUCCCGAG----GAGUCCCU || ||| |:| | | | |||||| CATGCTCCGATTCCCACTGGACCCAGGGA Nphp1 mmu-miR-362 18 38 AAGUGUGGAUCCAAGGUUCCUaa ||| |||: || |||:||| TTCCCACT--GGACCCAGGGAgc Nphp1 mmu-miR-377 92 113 uguuuucaACGGAAACACACua |||:|||||||| tagtcataTGCTTTTGTGTGca Nphp1 mmu-miR-423 46 70 gaCUCCCCGGAGU---CUGGCUCGa || |||||| ||:|||| aaGACTTGCCTCAAACAACTGAGCc Nphp1 mmu-miR-425 2 25 CCGCCUGUGC--UG-UAAGGGcua |||| ||:| | |||||| GGCGACCATGCTCCGATTCCCact Nphp1 mmu-miR-449 6 31 UGGU-CGAUUGUUA--UGUGAC--GGu |||| ||| |:|| ||||| || ACCATGCT-CCGATTCCCACTGGACCc Nphp1 mmu-miR-490 28 48 gucGUACCUCAGGAGGUCCaac || |||| |:|||||| accCAGGGAG-CTTCCAGGaag Nphp1 mmu-miR-491 4 25 ggaguaccuuccCAAGGGGUGA | |:|||||| cgaccatgctccGATTCCCACT Nphp1 mmu-miR-541 2 24 aCACUGGUUGUAGUCUUAGGGaa | ||||| || || |||| gGCGACCATGCTCCGATTCCCac Nphp1 mmu-miR-665 22 46 auucCCUGGAG----UCGGAGGACCa ||||| | |||:||| || cactGGACC-CAGGGAGCTTCCAGGa Nphp1 mmu-miR-670 18 37 AAGUGGUGUAUGUGAGUCCCUa ||| |||| |: || |||||| TTC-CCAC-TGGACCCAGGGAg Nphp1 mmu-miR-671 21 43 GGAGGUCGGGGAGGUCC-CGAAGGa || |::| || | :|| |||||| CCACTGGACC--CAGGGAGCTTCCa Nphp1 mmu-miR-678 38 70 GGAGGUC---AGGAACG--------UGGCUCug |:||||| ||||| ||:||| CTTCCAGGAAGACTTGCCTCAAACAACTGAGcc Nphp1 mmu-miR-685 51 75 cACGGAG--UG--GAGUCGGUAACU |||||| || || ||||| || tTGCCTCAAACAACTGAGCCAAAGA Nphp1 mmu-miR-687 29 49 aguaacgaCGUAAGGUCCUauc || |||||||| cccagggaGC-TTCCAGGAaga Nphp1 mmu-miR-705 4 25 aCGGGU--GGGGUGGAGGGUGg | ||| |:||: :|||||| cGACCATGCTCCGATTCCCACt Nphp1 mmu-miR-710 31 54 gaguugaGAGGG--GUUCUGAACc ||:|| |||||||| cagggagCTTCCAGGAAGACTTGc Nphp1 mmu-miR-711 4 31 gaauGUA-GAG----AGGG-GCCCAGGG ||| ||| |||| | || ||| cgacCATGCTCCGATTCCCACTGGACCC Nphp1 mmu-miR-712* 35 55 gUUGUGGGCCCCCACUGAGCGu |:| :|| || ||||:|| gAGCTTCC-AGGAAGACTTGCc Nphp1 mmu-miR-762 11 37 CGAGAC--AGGG---CCGGGGUCgggg |||| | |||| || ||||| GCTCCGATTCCCACTGGACCCAGggag Nphp1 mmu-miR-763 3 27 CGGUG--ACCAAG--AAGGGUCGACC || || || | | |||||| |||| GCGACCATGCTCCGATTCCCA-CTGG Nphp1 mmu-miR-770-3p 7 34 GGU-CGAGGU----GCAGUCC-GGGUgc ||| |||||: | | || |||| CCATGCTCCGATTCCCACTGGACCCAgg Nphp1 mmu-miR-9 57 75 GUAUGUCGAUCUAUUGGUUUCU || ||| || | |:||||||| CAAACAACT-G--AGCCAAAGA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nphp1 RAID00050104 mmu-miR-425-5p miRNA MIMAT0004750 Nphp1 mRNA 53885 Prediction 0.1828 Nphp1 RAID00091008 mmu-miR-181a-5p miRNA MIMAT0000210 Nphp1 mRNA 53885 Prediction 0.1828 Nphp1 RAID00268959 mmu-miR-24-3p miRNA MIMAT0000219 Nphp1 mRNA 53885 Prediction 0.1828 Nphp1 RAID00350760 mmu-miR-181c-5p miRNA MIMAT0000674 Nphp1 mRNA 53885 Prediction 0.1828 Nphp1 RAID01011468 mmu-miR-7052-5p miRNA MIMAT0028008 Nphp1 mRNA 53885 Prediction 0.1828 Nphp1 RAID01095094 mmu-miR-340-5p miRNA MIMAT0004651 Nphp1 mRNA 53885 Prediction 0.1828 Nphp1 RAID01810202 mmu-miR-181d-5p miRNA MIMAT0004324 Nphp1 mRNA 53885 Prediction 0.1828 Nphp1 RAID02183025 mmu-miR-6401 miRNA MIMAT0025153 Nphp1 mRNA 53885 Prediction 0.1828 Nphp1 RAID02658405 mmu-miR-181b-5p miRNA MIMAT0000673 Nphp1 mRNA 53885 Prediction 0.1828 Nphp1 RAID03092480 mmu-miR-590-3p miRNA MIMAT0004896 Nphp1 mRNA 53885 Prediction 0.1828 Nphp1 RAID03208566 mmu-miR-694 miRNA MIMAT0003474 Nphp1 mRNA 53885 Prediction 0.1828 Nphp1 RAID03653308 mmu-miR-466q miRNA MIMAT0020631 Nphp1 mRNA 53885 Prediction 0.1828 Nphp1 RAID03897173 mmu-miR-377-3p miRNA MIMAT0000741 Nphp1 mRNA 53885 Prediction 0.1828