DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000569 mmu-miR-330* 24105 Rbck1 agAGACGU--CCGGGAC-ACGAA-ACg |: ||| | |:||| ||||| || caUUCGCACUGCCUCUGUUGCUUCUGg 2 22 175 201 [mm9:2:152142369-152142395:-] 0.5137 123 0 -20.31 -0.2682 MIMAT0000578 mmu-miR-337-3p 24105 Rbck1 uccguaguauaucCUCGACUu ||||||| caaggacccagcuGAGCUGAu 2 9 152 172 [mm9:2:152142398-152142418:-] 0.4609 140 7 -15.21 -0.1837 MIMAT0000650 mmu-miR-17* 24105 Rbck1 gauguuCACGGGAGUGACGUCa | ||: | ||||||| aagcccGAGCUGU-ACUGCAGu 2 17 116 136 [mm9:2:152142434-152142454:-] 0.4106 146 7 -21.91 -0.1550 MIMAT0000742 mmu-miR-378* 24105 Rbck1 uguGUCC--UGGACC--UCAGUCCUc :||| : :||| |||||||| gccUAGGUAGAUUGGUAAGUCAGGAa 2 20 412 437 [mm9:2:152142133-152142158:-] 0.5560 149 7 -23.50 -0.7478 MIMAT0001342 mmu-miR-425* 24105 Rbck1 ccgcCUGUGCUGUAAGGG-CUa ||| | |: ||||| || gaguGACUCUAUUUUCCCUGAg 2 18 303 324 [mm9:2:152142246-152142267:-] 0.5161 121 0 -12.30 -0.3135 MIMAT0002108 mmu-miR-467a-1* 24105 Rbck1 cacauccacacacaUACAUAUa ||||||| ugacccagccccacAUGUAUAg 2 9 24 45 [mm9:2:152142525-152142546:-] 0.4975 140 7 -4.95 -0.1205 MIMAT0003166 mmu-miR-546 24105 Rbck1 cuGAGGCACGGUGGUa :| | ||||||| ccUUACUAGCCACCAg 2 15 239 254 [mm9:2:152142316-152142331:-] 0.5161 142 7 -13.64 -0.5649 MIMAT0004786 mmu-miR-540-5p 24105 Rbck1 ugucucagucucccaCUGGGAAc ||||||| cugcacuagacacccGACCCUUa 2 9 221 243 [mm9:2:152142327-152142349:-] 0.5161 140 7 -12.32 -0.2949 MIMAT0004788 mmu-miR-20b* 24105 Rbck1 gaucuuCACGAGUGUGACGUCa | ||| ::||||||| aagcccGAGCU-GUACUGCAGu 2 17 116 136 [mm9:2:152142434-152142454:-] 0.4106 150 7 -18.08 -0.1654 MIMAT0003732 mmu-miR-668 24105 Rbck1 ccAUC-ACCCGGCUC--GGCUCACUGu |:| ||| : | | |:||||||| ccUGGCUGGCUAGUGCUCUGAGUGACu 2 23 284 310 [mm9:2:152142260-152142286:-] 0.5161 152 7 -22.35 -0.3472 MIMAT0003892 mmu-miR-762 24105 Rbck1 cgAGACAGGGCCGGGGUCGGGg ||| : | | |||||||| gcUCUCAUACUGACCCAGCCCc 2 21 14 35 [mm9:2:152142535-152142556:-] 0.4975 156 7 -32.24 -0.5545 MIMAT0003896 mmu-miR-763 24105 Rbck1 cggugaccaagaaGGGUCGACc |||||||| uguguuacaaggaCCCAGCUGa 2 10 145 166 [mm9:2:152142404-152142425:-] 0.4609 145 7 -19.28 -0.2923 MIMAT0003741 mmu-miR-674* 24105 Rbck1 aacaagaCUCUACC---CUCGACAc |||| | ||||||| gguaaggGAGAAAGCCCGAGCUGUa 2 16 105 129 [mm9:2:152142441-152142465:-] 0.4106 142 7 -14.69 -0.1350 MIMAT0003461 mmu-miR-683 24105 Rbck1 cuCCUGU-GUCGAAUGUCGUCc | |:| |||: ||||||| auGUAUAGCAGUGAACAGCAGg 2 20 38 59 [mm9:2:152142511-152142532:-] 0.4900 154 7 -21.78 -0.1211 MIMAT0003470 mmu-miR-691 24105 Rbck1 aaaagacggagagaAGUCCUUa ||||||| gguagauugguaagUCAGGAAa 2 9 417 438 [mm9:2:152142132-152142153:-] 0.5560 140 7 -10.66 -0.2970 MIMAT0004189 mmu-miR-693-3p 24105 Rbck1 aauGUCGGUGUAGACUUUCGACg ::| |||:||| ||||||| uucUGGGCACGUCUUAAAGCUGa 2 21 373 395 [mm9:2:152142175-152142197:-] 0.5161 172 7 -23.52 -0.8602 MIMAT0003478 mmu-miR-467b* 24105 Rbck1 cacaaccacacacaUACAUAUa ||||||| ugacccagccccacAUGUAUAg 2 9 24 45 [mm9:2:152142525-152142546:-] 0.4975 140 7 -4.95 -0.1205 MIMAT0003499 mmu-miR-709 24105 Rbck1 aggAGGACG-GAGACGGAGg || | | | ||||||| augUCAUUCGCACUGCCUCu 2 17 171 190 [mm9:2:152142380-152142399:-] 0.5112 147 7 -19.28 -0.2542 MIMAT0003512 mmu-miR-450b-3p 24105 Rbck1 uaCGUACGUUUUAC---AAGGGUUa | || :|||:|| ||||||: guGAAU-UAAAGUGGUUUUCCCAGa 2 21 476 499 [mm9:2:152142071-152142094:-] 0.5560 137 0 -14.96 -0.1323 MIMAT0004868 mmu-miR-343 24105 Rbck1 agACCCGUGUACUUCCCUCu | ||| :: ||||||| uuUAGGCUUGGUAAGGGAGa 2 19 96 115 [mm9:2:152142455-152142474:-] 0.4424 150 7 -18.72 -0.2818 MIMAT0004887 mmu-miR-467d* 24105 Rbck1 cacauccacacacaUACAUAUa ||||||| ugacccagccccacAUGUAUAg 2 9 24 45 [mm9:2:152142525-152142546:-] 0.4975 140 7 -4.95 -0.1205 MIMAT0005294 mmu-miR-467e* 24105 Rbck1 uauauccacacacaUACAUAUa ||||||| ugacccagccccacAUGUAUAg 2 9 24 45 [mm9:2:152142525-152142546:-] 0.4975 140 7 -4.95 -0.1205 MIMAT0005852 mmu-miR-1194 24105 Rbck1 ucCUAGAUCGUCAAUGAG-UAAg | |||: ||| |||| ||| guGCUCUG--AGUGACUCUAUUu 2 21 296 316 [mm9:2:152142254-152142274:-] 0.5161 121 0 -9.44 -0.2750 MIMAT0009409 mmu-miR-1944 24105 Rbck1 uuaGUCUUGA--ACUGUAAGUCGUG-UCUc |||| || ||:| | |||| ||| gacCAGACCUCAUGGC--CCUGCACUAGAc 2 25 204 231 [mm9:2:152142339-152142366:-] 0.5161 120 0 -15.52 -0.1247 MIMAT0009419 mmu-miR-669m 24105 Rbck1 uauacaaacacaccUACAUAUa ||||||| ugacccagccccacAUGUAUAg 2 9 24 45 [mm9:2:152142525-152142546:-] 0.4975 140 7 -4.65 -0.1205 MIMAT0009426 mmu-miR-1955 24105 Rbck1 uuuucGACGUCACGUAGGACCC-UGa :||| | || |:||||| || uugccUUGCUG-GCUUUCUGGGCACg 2 21 359 383 [mm9:2:152142187-152142211:-] 0.5161 126 0 -19.44 -0.2766 MIMAT0009435 mmu-miR-1962 24105 Rbck1 uacaCAGGGUCACGGUCGGAGa | |||| ||||||| ugagGACCCA-CCACAGCCUCa 2 19 334 354 [mm9:2:152142216-152142236:-] 0.5161 144 7 -20.60 -0.7314 MIMAT0009435 mmu-miR-1962 24105 Rbck1 uacAC-AGGGUC-AC-GGUC-GGAGa || |:|::| || |||| |||| uguUGCUUCUGGCUGACCAGACCUCa 2 20 190 215 [mm9:2:152142355-152142380:-] 0.5137 120 0 -19.84 -0.1344 MIMAT0009439 mmu-miR-1966 24105 Rbck1 cugAGAGAGGACUCGGUCGAGGGAa |:|: |||||||: ||||||| cuaUUUUCCCUGAGCUUGCUCCCUg 2 23 311 335 [mm9:2:152142235-152142259:-] 0.5161 182 7 -35.21 -0.2923 MIMAT0011211 mmu-miR-2135 24105 Rbck1 caAAG-CCGG-GGUUCUGGAGa ||| |||: | ||||||| gcUUCUGGCUGACCAGACCUCa 2 19 194 215 [mm9:2:152142355-152142376:-] 0.5137 152 7 -20.80 -0.1620 MIMAT0011212 mmu-miR-2136 24105 Rbck1 guguagAGUCAGUUGU-GGGUc |||| |||| |||| gguaagUCAGGAAACAGCCCAu 2 16 425 446 [mm9:2:152142124-152142145:-] 0.5560 123 0 -16.05 -0.2675 MIMAT0011287 mmu-miR-2183 24105 Rbck1 uccUCCAGU-CCCCAAGUu || || |||||||| aacAGCCCAUGGGGUUCAg 2 16 437 455 [mm9:2:152142115-152142133:-] 0.5560 150 7 -17.63 -0.1388 MIMAT0015646 mmu-miR-3474 24105 Rbck1 cuUAGGUGCA-GAGGAGGGUCcc ||: | || |::|||||| gaAUUAAAGUGGUUUUCCCAGaa 3 21 478 500 [mm9:2:152142070-152142092:-] 0.5560 135 0 -17.24 -0.1051 MIMAT0000128 mmu-miR-30a 24105 Rbck1 gaAGGUCAG-CU-CCUACA-AAUGu | ||||| || | ||| |||| acUGCAGUCUGAUUGCUGUGUUACa 2 21 129 153 [mm9:2:152142417-152142441:-] 0.4106 122 0 -15.34 -0.2012 MIMAT0000141 mmu-miR-130a 24105 Rbck1 uacggGAAAAUUGUAA-CGUGAc || |: |||| ||||| cugagCUGAUGUCAUUCGCACUg 2 18 163 185 [mm9:2:152142385-152142407:-] 0.4609 121 0 -16.27 -0.2083 MIMAT0000150 mmu-miR-138 24105 Rbck1 gccGGACUAAGUGUUGUGGUCGa ||| | | :| ||||||| gacCCUUACUAGC--CACCAGCc 2 21 236 256 [mm9:2:152142314-152142334:-] 0.5161 149 7 -15.87 -0.3225 MIMAT0004577 mmu-miR-299 24105 Rbck1 uucgccaAAUGG--CAGGGUGUAu | ||| | ||||||| cucauacUGACCCAGCCCCACAUg 2 16 17 40 [mm9:2:152142530-152142553:-] 0.4975 146 7 -19.86 -0.1446 MIMAT0000379 mmu-miR-301a 24105 Rbck1 cgaaaCUGUUAUGAUAA-CGUGAc | ::||:: ||| ||||| gcugaGCUGAUGUCAUUCGCACUg 2 19 162 185 [mm9:2:152142385-152142408:-] 0.4609 122 0 -16.51 -0.2103 MIMAT0000381 mmu-miR-34c 24105 Rbck1 cguuAGUCGAUUGA-UGUGACGGa | | | |:| :||||||| gagcUGAUGUCAUUCGCACUGCCu 2 20 165 188 [mm9:2:152142382-152142405:-] 0.5112 146 7 -21.04 -0.1831 MIMAT0000382 mmu-miR-34b-5p 24105 Rbck1 uguuAGUCGAUUAA-UGUGACGGa | | | ||| :||||||| gagcUGAUGUCAUUCGCACUGCCu 2 20 165 188 [mm9:2:152142382-152142405:-] 0.5112 150 7 -21.35 -0.1831 MIMAT0000387 mmu-miR-130b 24105 Rbck1 uacggGAAAGUAGUAA-CGUGAc || ::||||| ||||| cugagCUGAUGUCAUUCGCACUg 2 18 163 185 [mm9:2:152142385-152142407:-] 0.4609 125 0 -18.40 -0.2045 MIMAT0000520 mmu-miR-208a 24105 Rbck1 uguUCGAAAAA--CGAGCAGAAUa :||||| | || ||||||| gcuGGCUUUCUGGGCACGUCUUAa 2 20 366 389 [mm9:2:152142181-152142204:-] 0.5161 162 7 -17.32 -0.5204 MIMAT0000542 mmu-miR-34a 24105 Rbck1 uguuggucgauucUGUGACGGu :||||||| gcugaugucauucGCACUGCCu 2 10 167 188 [mm9:2:152142382-152142403:-] 0.5112 141 7 -14.27 -0.1848 MIMAT0001095 mmu-miR-370 24105 Rbck1 ugguccaaggugggGUCGUCCg ||||||| uguauagcagugaaCAGCAGGg 2 9 39 60 [mm9:2:152142510-152142531:-] 0.4900 140 7 -15.09 -0.1251 MIMAT0001542 mmu-miR-449a 24105 Rbck1 uggUCGAUU---GUUA-UGUGACGGu ||||:| || | :||||||| cugAGCUGAUGUCAUUCGCACUGCCu 2 20 163 188 [mm9:2:152142382-152142407:-] 0.4609 153 7 -19.31 -0.1376 MIMAT0003128 mmu-miR-485 24105 Rbck1 cuuaaguagugccgGUCGGAGa ||||||| cugaggacccaccaCAGCCUCa 2 9 333 354 [mm9:2:152142216-152142237:-] 0.5161 140 7 -17.15 -0.7425 MIMAT0004186 mmu-miR-301b 24105 Rbck1 cgaaaCUGUUAUGGUAA-CGUGAc | ::||::|||| ||||| gcugaGCUGAUGUCAUUCGCACUg 2 19 162 185 [mm9:2:152142385-152142408:-] 0.4609 130 0 -21.88 -0.2103 MIMAT0003460 mmu-miR-449c 24105 Rbck1 gguCGAUCGUUA-CGUGACGGa | |: || | |||||||| gcuGAUGUCAUUCGCACUGCCu 2 19 167 188 [mm9:2:152142382-152142403:-] 0.5112 153 7 -19.23 -0.1814 MIMAT0005447 mmu-miR-449b 24105 Rbck1 cgguCGAUUGUUGUGACGGa |: | : :||||||| ugauGUCAUUCGCACUGCCu 2 17 169 188 [mm9:2:152142382-152142401:-] 0.5112 144 7 -17.02 -0.1831 MIMAT0004939 mmu-miR-208b 24105 Rbck1 uguUUGGAAAA--CAAGCAGAAUa ::|:|| | | ||||||| gcuGGCUUUCUGGGCACGUCUUAa 2 20 366 389 [mm9:2:152142181-152142204:-] 0.5161 146 7 -14.11 -0.5274

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G038303 Rbck1 Mus musculus 24105

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rbck1 mmu-miR-343 beg:97 end:116 pic:3' AGACCCGTGTAC-TTCCCTCT 5'& ||| | |||||||| &5' ----GGCTTG-GTAAGGGAGA 3' Rbck1 mmu-miR-683 beg:42 end:60 pic:3' CTCCTGTGTCGAATGTCGTCC 5'& .|||. |||||||| &5' ------GCAGTGAACAGCAGG 3' Rbck1 mmu-miR-17star beg:121 end:137 pic:3' GATGTTCACGGGAGTGACGTCA 5'& ||. .|||||||| &5' --------GCTG-TACTGCAGT 3' Rbck1 mmu-miR-20bstar beg:121 end:137 pic:3' GATCTTCACGAGTGTGACGTCA 5'& ||| ..|||||||| &5' --------GCT-GTACTGCAGT 3' Rbck1 mmu-miR-2135 beg:197 end:215 pic:3' CAAAGCCGG--GGTTCTGGAGA 5'& .|||. || ||||||| &5' ----TGGCTGACC-AGACCTC- 3' Rbck1 mmu-miR-449b beg:170 end:189 pic:3' CGGTCGATTGTTGTGACGGA 5'& |.|| .|||||||| &5' GTCATTC----GCACTGCCT 3' Rbck1 mmu-miR-34a beg:177 end:188 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& .||||||| &5' -------------GCACTGCC- 3' Rbck1 mmu-miR-449a beg:177 end:188 pic:3' TGGTCGATTGTTATGTGACGGT 5'& .||||||| &5' -------------GCACTGCC- 3' Rbck1 mmu-miR-34b-5p beg:177 end:189 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& .|||||||| &5' --------------GCACTGCCT 3' Rbck1 mmu-miR-34c beg:177 end:189 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& .|||||||| &5' --------------GCACTGCCT 3' Rbck1 mmu-miR-449c beg:177 end:189 pic:3' GGTCGATCGTTACGTGACGGA 5'& ||||||||| &5' ------------GCACTGCCT 3' Rbck1 mmu-miR-1962 beg:337 end:354 pic:3' TACACAGGGTCACGGTCGGAGA 5'& |||| ||||||| &5' ------CCCACCA-CAGCCTC- 3' Rbck1 mmu-miR-485 beg:339 end:354 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& ||| ||||||| &5' --------CACCA-CAGCCTC- 3' Rbck1 mmu-miR-709 beg:174 end:197 pic:3' AGGAG-GACGGAGACGGAGG 5'& |.| |||||||||. |. &5' TTCGCACTGCCTCTGTTGCT 3' Rbck1 mmu-miR-540-5p beg:224 end:243 pic:3' TGTCTCAGTCTCCCA-CTGGGAAC 5'& .||| ||||||| &5' -------TAGACACCCGACCCTT- 3' Rbck1 mmu-miR-674star beg:119 end:129 pic:3' AACAAGACTCTACCCTCGACAC 5'& ||||||| &5' --------------GAGCTGT- 3' Rbck1 mmu-miR-1966 beg:316 end:335 pic:3' CTGAGAGAGGACTCGGTCGAGGGAA 5'& || |||||||. ||||||| &5' -----TC-CCTGAGCTTGCTCCCT- 3' Rbck1 mmu-miR-2183 beg:441 end:456 pic:3' TCCTCCAGT-CCCCAAGTT 5'& || ||||||||. &5' -------CATGGGGTTCAG 3' Rbck1 mcmv-miR-m107-1-5p beg:293 end:311 pic:3' CCACTGAGCTCTGCTCACTGGC 5'& ||| ||| .|||||||. &5' -GTG-CTC----TGAGTGACT- 3' Rbck1 mcmv-miR-m108-2-5p.2 beg:294 end:309 pic:3' CACTGGCGAGCGCTGCTCACT 5'& .|||| .|||||| &5' -----TGCTC----TGAGTGA 3' Rbck1 mghv-miR-M1-5 beg:438 end:460 pic:3' CTCTGCTGGG---CTAGAGTTGAGA 5'& .||| | .|||.|||| &5' ------GCCCATGGGGTTCAGCTCT 3' Rbck1 mmu-let-7a beg:169 end:190 pic:3' TTGATATGTTGGA-TGATGGAGT 5'& |.| || | |||.|||| &5' ---TGT-CATTCGCACTGCCTC- 3' Rbck1 mmu-let-7c beg:172 end:190 pic:3' TTGGTATGTTGGA-TGATGGAGT 5'& || | |||.|||| &5' -------CATTCGCACTGCCTC- 3' Rbck1 mmu-let-7d beg:168 end:191 pic:3' TTGATAC-GTTGGA-TGATGGAGA 5'& ||| || | |||.||||| &5' ----ATGTCATTCGCACTGCCTCT 3' Rbck1 mmu-let-7e beg:169 end:190 pic:3' TTGATATGTTGGAG-GATGGAGT 5'& |.| || | ||.|||| &5' ---TGT-CATTCGCACTGCCTC- 3' Rbck1 mmu-let-7e beg:451 end:475 pic:3' TTGATATGTTGGAGGATGGAGT 5'& |.|| |.|| |||||| |.|.| &5' AGCTCTGCATCCTCCT-CTTTA 3' Rbck1 mmu-let-7f beg:169 end:190 pic:3' TTGATATGTTAGA-TGATGGAGT 5'& |.| || || |||.|||| &5' ---TGT-CATTCGCACTGCCTC- 3' Rbck1 mmu-let-7g beg:169 end:190 pic:3' TTGACATGTTTGA-TGATGGAGT 5'& ||| || | |||.|||| &5' ---TGT-CATTCGCACTGCCTC- 3' Rbck1 mmu-let-7i beg:170 end:190 pic:3' TTGTC-GTGTTTGATGATGGAGT 5'& | ||. .| |||.|||| &5' ----GTCATTCGC-ACTGCCTC- 3' Rbck1 mmu-miR-1190 beg:152 end:167 pic:3' CTGTCTCCCCTTGGAGTCGACT 5'& |.||| ||||||| &5' ---------GGACC-CAGCTGA 3' Rbck1 mmu-miR-1196 beg:405 end:425 pic:3' TCCGTCTCCG--TCCATCTAAA 5'& ||| ||| ||||||||| &5' ---CAG-GGCCTAGGTAGATT- 3' Rbck1 mmu-miR-133a beg:188 end:211 pic:3' GTCGACCAACTTCCCCTGGTTT 5'& |.|| || .| |||||.| &5' --GTTGCTTCTGGCTGACCAGA 3' Rbck1 mmu-miR-133b beg:188 end:211 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& |.|| || .| |||||.| &5' --GTTGCTTCTGGCTGACCAGA 3' Rbck1 mmu-miR-136star beg:1 end:13 pic:3' TTCTGAGTAAACTCTGCTACTA 5'& |||||||.| &5' -------------GACGATGGT 3' Rbck1 mmu-miR-138 beg:236 end:256 pic:3' GCCGGACTAAGTGTTGTGGTCGA 5'& ||| .| ||||||| &5' ---CCTTACTAGC--CACCAGC- 3' Rbck1 mmu-miR-145star beg:417 end:438 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||| .||| .|||||| &5' --AGATTGGTAAG-TCAGGAA- 3' Rbck1 mmu-miR-151-3p beg:119 end:140 pic:3' GGAGTTCCTCGGA-----GTCAGATC 5'& ||||. ||||||. &5' -------GAGCTGTACTGCAGTCTG- 3' Rbck1 mmu-miR-16 beg:182 end:197 pic:3' GCGGTTATAAATGCACGACGAT 5'& ||| | ||.|||| &5' -GCCT-------C-TGTTGCT- 3' Rbck1 mmu-miR-1894-5p beg:96 end:116 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& |||| ||||| |||||| &5' --AGGCT--TGGTAAGGGAGA- 3' Rbck1 mmu-miR-1897-5p beg:389 end:413 pic:3' GGGGGAGAAAGAGGTAGGTTTC 5'& |. | | ||||||||..| &5' -CTGATGTGAATCCATCCAGGG 3' Rbck1 mmu-miR-1907 beg:174 end:197 pic:3' TGGAG-GTCTAGGAGACGACGAG 5'& .|| || ||||||.||||. &5' --TTCGCACTGCCTCTGTTGCTT 3' Rbck1 mmu-miR-193 beg:279 end:298 pic:3' TGACCCTGAAACATCCGGTCAA 5'& || || |||.||| &5' ----GGCCTGGCT-GGCTAGT- 3' Rbck1 mmu-miR-1934 beg:191 end:211 pic:3' TCTCCTGCTTCGT---CCC-CTGGTCT 5'& || || ||||||| &5' ----------GCTTCTGGCTGACCAGA 3' Rbck1 mmu-miR-1935 beg:170 end:194 pic:3' TCTCTAGGCGGT-CGGAGACGGA 5'& | ||.||| |||||||.. &5' -GTCATTCGCACTGCCTCTGTT- 3' Rbck1 mmu-miR-193star beg:144 end:162 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& ||.. |||.|||||| &5' ------TGTTA-CAAGGACCCA 3' Rbck1 mmu-miR-193star beg:322 end:344 pic:3' AGTAGAACG-GGCGTTTCTGGGT 5'& ||||| || ..|.|||||| &5' ----CTTGCTCCCTGAGGACCCA 3' Rbck1 mmu-miR-194 beg:176 end:196 pic:3' AGGTGT-ACCTCAACGACAATGT 5'& |.|.|| || |||||.| &5' TTCGCACTGCCT---CTGTTGC- 3' Rbck1 mmu-miR-195 beg:184 end:197 pic:3' CGGTTATAAAGACACGACGAT 5'& || ||.|||| &5' ----------CTCTGTTGCT- 3' Rbck1 mmu-miR-1953 beg:291 end:321 pic:3' GTCTTCG-GACTCT------TGAAAGGGT 5'& .|| || ||||| |.|||||| &5' TAGT-GCTCTGAGTGACTCTATTTTCCC- 3' Rbck1 mmu-miR-1953 beg:487 end:498 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& .||||||| &5' --------------TTTTCCCA 3' Rbck1 mmu-miR-1959 beg:449 end:468 pic:3' GAGGTGACTCGATGTAGGGG 5'& || .|| ||.|||||.| &5' -TCAGCT---CTGCATCCTC 3' Rbck1 mmu-miR-1959 beg:314 end:335 pic:3' GAGGTGACTCG-ATGTAGGGG 5'& ||| |||||| |.| ||||. &5' -TCC-CTGAGCTTGC-TCCCT 3' Rbck1 mmu-miR-1961 beg:177 end:190 pic:3' AAGATTGATGATGGAGT 5'& .| |||.|||| &5' -----GC-ACTGCCTC- 3' Rbck1 mmu-miR-1962 beg:241 end:259 pic:3' TACACAGGGTCAC-GGTCGGAGA 5'& |.|| |||||||. &5' -------CTAGCCACCAGCCTT- 3' Rbck1 mmu-miR-211 beg:52 end:73 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& |||..| |.| |||||| &5' --GCAGGGCTAGGC-AAGGGA- 3' Rbck1 mmu-miR-2137 beg:439 end:462 pic:3' GAGGG-ACCCCGAGGGCG-GCCG 5'& ||| |||||.|| || | || &5' --CCCATGGGGTTCA-GCTCTGC 3' Rbck1 mmu-miR-2140 beg:207 end:228 pic:3' TGGTGGTTCTA-GACGTGGA 5'& ||| .|| |. ||||||. &5' ACC-TCATGGCCCTGCACT- 3' Rbck1 mmu-miR-2140 beg:449 end:465 pic:3' TGGTGGTTCTAGACGTGGA 5'& .| || ||||||.| &5' ----TC-AGCTCTGCATC- 3' Rbck1 mmu-miR-24-2star beg:50 end:68 pic:3' TGACAAAGTCGAGTC-ATCCGTG 5'& |||| .| |||||| &5' -------CAGCAGGGCTAGGCA- 3' Rbck1 mmu-miR-296-3p beg:220 end:243 pic:3' CCTCTCG-GAG--GTGGGTTGGGAG 5'& || || |||||.|||||. &5' -----GCACTAGACACCCGACCCTT 3' Rbck1 mmu-miR-298 beg:177 end:194 pic:3' CCCTTCTTGTCG-GGAGGAGACGG 5'& || |. ||||||.. &5' ----------GCACTGCCTCTGTT 3' Rbck1 mmu-miR-30c-2star beg:481 end:499 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& ||. |. |.|||||| &5' -----AAGTGGT--TTTCCCAG 3' Rbck1 mmu-miR-327 beg:459 end:478 pic:3' TAGGAGTACGGGGAGTTCA 5'& |||||| |.|.|.|||| &5' ATCCTC---CTCTTTAAGT 3' Rbck1 mmu-miR-337-3p beg:151 end:172 pic:3' TCCGTAGTATATCCTCGACTT 5'& ||| || ||||||| &5' AGGACCCAGCT--GAGCTGA- 3' Rbck1 mmu-miR-345-3p beg:436 end:456 pic:3' CAGAGGTCTGGGGA--TCAAGTCC 5'& ||| ||| .|||||| &5' -----CAG-CCCATGGGGTTCAG- 3' Rbck1 mmu-miR-361 beg:89 end:110 pic:3' CATGGGGA-CCTCTAAGACTATT 5'& ||||..| || .||.||| &5' -TACCTTTAGGC----TTGGTAA 3' Rbck1 mmu-miR-378star beg:416 end:437 pic:3' TGTGTCCTG--GACC--TCAGTCCTC 5'& || .||| |||||||| &5' -----GGTAGATTGGTAAGTCAGGA- 3' Rbck1 mmu-miR-382star beg:293 end:309 pic:3' TTTTTCACAACAGGCACTTACT 5'& || |. |||.||| &5' -------GTG--CTCTGAGTGA 3' Rbck1 mmu-miR-450b-3p beg:479 end:499 pic:3' TACGTACGTTTTAC---AAGGGTTA 5'& .|||.|| ||||||. &5' -------TAAAGTGGTTTTCCCAG- 3' Rbck1 mmu-miR-464 beg:87 end:109 pic:3' ATAGAGTGTCTT-ATTTGAACCAT 5'& ||.| ||..||||||| &5' -----CATACCTTTAGGCTTGGTA 3' Rbck1 mmu-miR-485 beg:244 end:259 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& .| |||||||. &5' ---------GCCACCAGCCTT- 3' Rbck1 mmu-miR-499 beg:371 end:390 pic:3' TTTGTAGTGACGTTCAGAATT 5'& || ||| ||||||| &5' -----TCTGGGCACGTCTTAA 3' Rbck1 mmu-miR-503 beg:177 end:197 pic:3' GACGTCATGACAAGGGCGACGAT 5'& || |||| .|.|.|||| &5' --GC---ACTGCCTCTGTTGCT- 3' Rbck1 mmu-miR-542-5p beg:318 end:338 pic:3' AGCACTGTACTACTAGGGGCTC 5'& ||| || ||||.||| &5' ---TGAGCT--TGCTCCCTGAG 3' Rbck1 mmu-miR-542-5p beg:302 end:325 pic:3' AGCACTGTACTACTAGGGGCTC 5'& ||||| ||||.||| &5' --GTGACTCTATTTTCCCTGAG 3' Rbck1 mmu-miR-546 beg:233 end:254 pic:3' CTGAGGCA----CGGTGGTA 5'& ||| || ||||||| &5' GAC-CCTTACTAGCCACCA- 3' Rbck1 mmu-miR-668 beg:288 end:310 pic:3' CCATCACCCGG-CTCGG--CTCACTGT 5'& |||. | ||. ||||||| &5' -------GGCTAGTGCTCTGAGTGAC- 3' Rbck1 mmu-miR-671-5p beg:354 end:377 pic:3' GAGGT--CGGGGAGGTCCCGAAGGA 5'& ||| |||. |. |||||.|| &5' -TCCTTTGCCTTGCT--GGCTTTCT 3' Rbck1 mmu-miR-672 beg:239 end:260 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& .|| .|| |||||.|||.| &5' ---TAC-TAGC-CACCAGCCTTA 3' Rbck1 mmu-miR-673-3p beg:244 end:277 pic:3' CCACGT--GTC---------TTGAGTCGGGGCCT 5'& || ||| ||| |.|||..|| &5' ---GCCACCAGCCTTAATTAAACACGGCCTTGG- 3' Rbck1 mmu-miR-684 beg:97 end:117 pic:3' AACTGAACT--TCCCTTTTGA 5'& |.||||. |||||.|| &5' --GGCTTGGTAAGGGAGAA-- 3' Rbck1 mmu-miR-691 beg:423 end:438 pic:3' AAAAGACGGAGAGAAGTCCTTA 5'& |. ||||||| &5' ------GTAAG---TCAGGAA- 3' Rbck1 mmu-miR-692 beg:96 end:116 pic:3' CTCACTCCGCGAG--TTTCTCTA 5'& |||| |..|||| &5' -----AGGCTTGGTAAGGGAGA- 3' Rbck1 mmu-miR-693-3p beg:374 end:395 pic:3' AATGTCGGTGTAGACTTTCGACG 5'& .| |||.||| ||||||| &5' ----GGGCACGTCTTAAAGCTG- 3' Rbck1 mmu-miR-710 beg:91 end:107 pic:3' GAGTTGAGAGGGGTTCTGAACC 5'& ||. ||.||||| &5' ---------CCTTTAGGCTTGG 3' Rbck1 mmu-miR-742 beg:356 end:376 pic:3' AAATGGGTCGTACCACCGAAAG 5'& ||.||. || |||||||| &5' -TTGCCTTGC----TGGCTTTC 3' Rbck1 mmu-miR-742 beg:483 end:495 pic:3' AAATGGGTCGTACCACCGAAAG 5'& ||||.|||| &5' -------------GTGGTTTTC 3' Rbck1 mmu-miR-744 beg:205 end:226 pic:3' ACGACAATC-GGG--ATCGGGGCGT 5'& || ||. |.||||.||| &5' -------AGACCTCATGGCCCTGCA 3' Rbck1 mmu-miR-744 beg:346 end:368 pic:3' ACGACAATCGGGATCGGGGCGT 5'& || ||.| |||..|| &5' -GCCTCAT-CCTTTGCCTTGC- 3' Rbck1 mmu-miR-760 beg:338 end:358 pic:3' AGG-GGTGTCTGGGTCTCGGC 5'& || |||||| |.|| || &5' -CCACCACAGCCTCAT--CC- 3' Rbck1 mmu-miR-762 beg:241 end:259 pic:3' CGAGACAGGGCCGG-GGTCGGGG 5'& | ||| ||||||.. &5' --------CTAGCCACCAGCCTT 3' Rbck1 mmu-miR-762 beg:12 end:36 pic:3' CGAGACAG-GGCCGGGGTCGGGG 5'& ||||| |.| ||||||||| &5' GCTCTCATACTGA-CCCAGCCCC 3' Rbck1 mmu-miR-763 beg:145 end:166 pic:3' CGGTGA-CCAAGAAGGGTCGACC 5'& |..|| || |||||||| &5' GTTACAAGGA----CCCAGCTG- 3' Rbck1 mmu-miR-871 beg:285 end:308 pic:3' GTACTGACCG-TGATTAGACTTAT 5'& ||.||||| | |. |||||.|. &5' --TGGCTGGCTAGTGCTCTGAGTG 3' Rbck1 mmu-miR-878-5p beg:401 end:421 pic:3' ACAGAACTGTAGGTT---GATCTAT 5'& ||||||. ||||.|| &5' --------CATCCAGGGCCTAGGTA 3' Rbck1 mmu-miR-92astar beg:338 end:357 pic:3' CATTACGGTGGTTA-GGGGTGGA 5'& |||||| ||.||.| &5' ------CCACCACAGCCTCATC- 3' Rbck1 mmu-miR-98 beg:179 end:190 pic:3' TTGTTATGTTGAATGATGGAGT 5'& |||.|||| &5' -------------ACTGCCTC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rbck1 RAID00203098 mmu-miR-449c-5p miRNA MIMAT0003460 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID00247896 mmu-miR-7048-5p miRNA MIMAT0028000 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID00297131 mmu-miR-185-3p miRNA MIMAT0016996 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID00653127 mmu-miR-1966-5p miRNA MIMAT0009439 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID00715159 mmu-miR-205-5p miRNA MIMAT0000238 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID00932083 mmu-miR-130b-3p miRNA MIMAT0000387 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID01172986 mmu-miR-370-3p miRNA MIMAT0001095 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID01206323 mmu-miR-301b-3p miRNA MIMAT0004186 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID01295722 mmu-miR-449b miRNA MIMAT0005447 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID01325750 mmu-miR-93-5p miRNA MIMAT0000540 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID01356125 mmu-miR-138-5p miRNA MIMAT0000150 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID01368598 mmu-miR-130a-3p miRNA MIMAT0000141 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID01392651 mmu-miR-6907-5p miRNA MIMAT0027714 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID01617394 mmu-miR-3083-5p miRNA MIMAT0014874 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID01703041 mmu-miR-301a-3p miRNA MIMAT0000379 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID02007275 mmu-miR-34c-5p miRNA MIMAT0000381 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID02112050 mmu-miR-7213-5p miRNA MIMAT0028394 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID02133830 mmu-miR-30a-5p miRNA MIMAT0000128 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID02338904 mmu-miR-449a-5p miRNA MIMAT0001542 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID02361829 mmu-miR-493-5p miRNA MIMAT0017276 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID02416894 mmu-miR-546 miRNA MIMAT0003166 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID02733585 mmu-miR-299a-3p miRNA MIMAT0004577 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID03066236 mmu-miR-383-3p miRNA MIMAT0017082 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID03188731 mmu-miR-6951-3p miRNA MIMAT0027803 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID03203827 mmu-miR-485-5p miRNA MIMAT0003128 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID03295383 mmu-miR-208a-3p miRNA MIMAT0000520 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID03334822 mmu-miR-5129-5p miRNA MIMAT0020640 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID03401091 mmu-miR-6354 miRNA MIMAT0025097 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID03421272 mmu-miR-299b-3p miRNA MIMAT0022837 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID03423439 mmu-miR-7019-5p miRNA MIMAT0027942 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID03598968 mmu-miR-208b-3p miRNA MIMAT0004939 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID03691820 mmu-miR-34b-5p miRNA MIMAT0000382 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID03841435 mmu-miR-7116-3p miRNA MIMAT0028130 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID03852302 mmu-miR-452-5p miRNA MIMAT0001637 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID03960509 mmu-miR-7064-5p miRNA MIMAT0028032 Rbck1 mRNA 24105 Prediction 0.1828 Rbck1 RAID03996235 mmu-miR-34a-5p miRNA MIMAT0000542 Rbck1 mRNA 24105 Prediction 0.1828